Wall clock time and date at job start Mon Mar 30 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35741 * 116.99909 * 2 1 4 4 C 1.35877 * 126.13418 * 183.28244 * 3 2 1 5 5 C 1.40363 * 107.78395 * 179.90809 * 4 3 2 6 6 N 1.39960 * 125.93211 * 180.14468 * 5 4 3 7 7 C 1.46498 * 120.00295 * 0.27719 * 6 5 4 8 8 C 1.52990 * 109.47255 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47120 * 299.99998 * 8 7 6 10 10 C 1.52999 * 109.47315 * 59.99923 * 8 7 6 11 11 C 1.53006 * 109.47331 * 179.97438 * 8 7 6 12 12 C 1.50697 * 109.47212 * 179.97438 * 11 8 7 13 13 H 1.08005 * 120.00189 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99927 * 180.02562 * 12 11 8 15 15 N 1.31512 * 119.99904 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99987 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47141 * 59.99761 * 16 14 12 18 18 H 1.48497 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47171 * 299.99747 * 16 14 12 20 20 N 1.31232 * 108.12874 * 0.35984 * 5 4 3 21 21 N 1.35160 * 126.13626 * 3.59120 * 3 2 1 22 22 C 1.46501 * 125.97530 * 359.96406 * 21 3 2 23 23 H 1.08996 * 109.46885 * 307.02244 * 1 2 3 24 24 H 1.09002 * 109.47262 * 67.02592 * 1 2 3 25 25 H 1.09006 * 109.47051 * 187.02413 * 1 2 3 26 26 H 1.07995 * 126.10547 * 0.03025 * 4 3 2 27 27 H 0.97001 * 119.99459 * 180.28275 * 6 5 4 28 28 H 1.09002 * 109.47085 * 300.00588 * 7 6 5 29 29 H 1.09000 * 109.46827 * 59.99845 * 7 6 5 30 30 H 1.09000 * 109.47326 * 60.00376 * 9 8 7 31 31 H 1.09005 * 109.47034 * 180.02562 * 9 8 7 32 32 H 1.08994 * 109.47422 * 299.99817 * 9 8 7 33 33 H 1.09003 * 109.47388 * 59.99758 * 10 8 7 34 34 H 1.09005 * 109.47330 * 179.97438 * 10 8 7 35 35 H 1.08994 * 109.47107 * 300.00126 * 10 8 7 36 36 H 1.08995 * 109.47010 * 300.00164 * 11 8 7 37 37 H 1.09004 * 109.46284 * 60.00432 * 11 8 7 38 38 H 0.97000 * 119.99785 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.46981 * 82.72293 * 22 21 3 40 40 H 1.08997 * 109.47311 * 202.72509 * 22 21 3 41 41 H 1.09001 * 109.47179 * 322.72495 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.3852 1.4260 -0.0628 5 6 3.5968 2.8134 -0.0397 6 7 4.8393 3.4557 -0.0900 7 6 6.0693 2.6652 -0.1814 8 6 7.2769 3.6037 -0.2205 9 6 7.1695 4.5226 -1.4392 10 6 7.3075 4.4490 1.0544 11 6 8.5617 2.7782 -0.3153 12 6 9.7511 3.7026 -0.3545 13 1 9.6054 4.7721 -0.3152 14 6 11.0254 3.1832 -0.4405 15 7 11.2029 1.8810 -0.4878 16 14 12.4999 4.3291 -0.4883 17 1 12.5296 5.1495 0.7491 18 1 13.7466 3.5279 -0.5817 19 1 12.3955 5.2210 -1.6711 20 7 2.4275 3.4035 0.0421 21 7 1.4364 2.4142 0.0684 22 6 -0.0077 2.6450 0.1550 23 1 -0.3633 0.6188 0.8205 24 1 -0.3634 0.4011 -0.9462 25 1 -0.3633 -1.0200 0.1257 26 1 4.1505 0.6664 -0.1222 27 1 4.8859 4.4242 -0.0643 28 1 6.1461 2.0109 0.6869 29 1 6.0474 2.0627 -1.0895 30 1 6.2543 5.1108 -1.3712 31 1 8.0301 5.1910 -1.4673 32 1 7.1478 3.9205 -2.3475 33 1 7.3840 3.7944 1.9226 34 1 8.1682 5.1174 1.0267 35 1 6.3924 5.0371 1.1224 36 1 8.6380 2.1239 0.5530 37 1 8.5401 2.1758 -1.2235 38 1 12.0994 1.5156 -0.5486 39 1 -0.3302 2.5444 1.1913 40 1 -0.2372 3.6492 -0.2012 41 1 -0.5302 1.9129 -0.4608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305691242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:08 Heat of formation + Delta-G solvation = 50.842541 kcal Electronic energy + Delta-G solvation = -20400.062854 eV Core-core repulsion = 17317.856623 eV Total energy + Delta-G solvation = -3082.206231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35728 -38.50785 -37.46219 -34.40548 -32.65198 -31.70612 -29.68904 -27.56668 -26.97260 -26.39095 -26.16549 -25.19106 -22.71693 -21.36500 -20.18842 -18.27407 -17.64202 -16.71578 -16.29782 -15.76269 -15.54106 -14.91801 -14.64962 -14.38378 -14.10749 -13.97507 -13.84004 -13.28434 -12.95165 -12.86392 -12.60828 -12.38985 -12.00529 -11.55198 -11.46324 -11.05860 -10.93260 -10.81665 -10.55301 -10.35955 -10.21323 -10.18321 -9.89286 -9.57102 -9.13505 -8.87941 -8.31412 -8.20574 -7.37885 -5.96060 -3.96628 2.04719 2.35582 2.84604 3.24749 3.35568 3.40471 3.42351 3.80663 4.40000 4.49532 4.53619 4.74422 4.86976 4.96763 5.21375 5.39749 5.45044 5.52581 5.65445 5.72069 5.84830 5.91526 6.07946 6.29985 6.31039 6.35394 6.51286 6.60940 6.73750 6.76218 7.13526 7.16846 7.19055 7.41948 7.44891 7.68539 7.82179 7.92743 8.03508 8.35972 8.46520 9.07987 9.66198 11.15486 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.044433 B = 0.003405 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.007790 B = 8220.534501 C = 8643.343045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.294 6.294 3 C 0.289 3.711 4 C -0.319 4.319 5 C 0.370 3.630 6 N -0.709 5.709 7 C 0.145 3.855 8 C -0.070 4.070 9 C -0.126 4.126 10 C -0.126 4.126 11 C 0.037 3.963 12 C -0.510 4.510 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.278 1.278 20 N -0.359 5.359 21 N -0.411 5.411 22 C 0.090 3.910 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.152 0.848 27 H 0.403 0.597 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.031 0.969 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.170 -1.102 1.003 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.200 6.200 3 C 0.121 3.879 4 C -0.351 4.351 5 C 0.111 3.889 6 N -0.350 5.350 7 C 0.022 3.978 8 C -0.071 4.071 9 C -0.184 4.184 10 C -0.184 4.184 11 C -0.001 4.001 12 C -0.548 4.548 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 N -0.197 5.197 21 N -0.206 5.206 22 C -0.052 4.052 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.123 0.877 26 H 0.170 0.830 27 H 0.239 0.761 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.581 -0.638 1.051 22.614 hybrid contribution 0.974 0.138 -0.046 0.985 sum -21.607 -0.500 1.005 21.636 Atomic orbital electron populations 1.23590 0.78558 1.04840 1.01307 1.86267 1.21167 1.22611 1.89952 1.19408 0.90977 0.78820 0.98724 1.20004 0.92121 0.95620 1.27377 1.18921 0.87096 0.89849 0.93005 1.44083 1.00118 1.08402 1.82408 1.21551 0.81860 0.93861 1.00574 1.20867 0.95227 0.95829 0.95157 1.21743 0.99993 0.99235 0.97391 1.21745 1.00057 0.99557 0.97008 1.19087 0.89085 0.94540 0.97351 1.21169 0.90735 0.93049 1.49882 0.92312 1.25000 0.98967 0.94885 0.95615 1.69951 1.22005 1.10766 1.50826 0.86720 0.82277 0.80833 0.78530 1.20338 1.21435 1.20345 1.77556 0.94070 1.09095 1.38998 1.48285 1.06174 1.02451 1.63662 1.22246 0.75821 1.04752 1.02356 0.91876 0.92155 0.87715 0.83009 0.76063 0.92582 0.92576 0.95030 0.91649 0.93448 0.93448 0.91647 0.95032 0.96353 0.96360 0.93038 0.91396 0.89087 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.40 101.05 0.95 1.03 16 2 O -0.29 -3.48 10.57 -18.93 -0.20 -3.68 16 3 C 0.29 4.11 7.78 -16.93 -0.13 3.97 16 4 C -0.32 -5.13 10.13 -39.63 -0.40 -5.53 16 5 C 0.37 6.22 8.15 -154.59 -1.26 4.96 16 6 N -0.71 -11.61 5.17 -60.09 -0.31 -11.92 16 7 C 0.15 2.55 4.49 -4.05 -0.02 2.53 16 8 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 9 C -0.13 -2.33 8.05 37.16 0.30 -2.03 16 10 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 11 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 12 C -0.51 -13.66 7.65 -34.44 -0.26 -13.92 16 13 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 N -0.36 -5.90 12.58 31.39 0.39 -5.51 16 21 N -0.41 -5.52 4.02 -68.30 -0.27 -5.80 16 22 C 0.09 0.71 9.58 59.85 0.57 1.28 16 23 H 0.06 0.33 5.79 -51.93 -0.30 0.03 16 24 H 0.06 0.31 6.61 -51.93 -0.34 -0.03 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.15 2.36 7.90 -52.49 -0.41 1.95 16 27 H 0.40 6.35 6.29 -40.82 -0.26 6.10 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 31 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 35 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.07 0.43 7.63 -51.93 -0.40 0.04 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.46 4.64 -51.93 -0.24 0.21 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -31.88 324.74 -6.20 -38.08 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.17 Total: 2.23 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.25 Total: -8.93 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.55 Total: -48.96 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.20 Total: -3.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.88 -6.20 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305691242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.921 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds