Wall clock time and date at job start Mon Mar 30 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35741 * 116.99909 * 2 1 4 4 C 1.35877 * 126.13418 * 183.28244 * 3 2 1 5 5 C 1.40363 * 107.78395 * 179.90809 * 4 3 2 6 6 N 1.39960 * 125.93211 * 180.14468 * 5 4 3 7 7 C 1.46498 * 120.00295 * 0.27719 * 6 5 4 8 8 C 1.52990 * 109.47255 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47120 * 299.99998 * 8 7 6 10 10 C 1.52999 * 109.47315 * 59.99923 * 8 7 6 11 11 C 1.53006 * 109.47331 * 179.97438 * 8 7 6 12 12 C 1.50697 * 109.47212 * 179.97438 * 11 8 7 13 13 H 1.08005 * 120.00189 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99927 * 180.02562 * 12 11 8 15 15 N 1.31512 * 119.99904 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99987 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47141 * 59.99761 * 16 14 12 18 18 H 1.48497 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47171 * 299.99747 * 16 14 12 20 20 N 1.31232 * 108.12874 * 0.35984 * 5 4 3 21 21 N 1.35160 * 126.13626 * 3.59120 * 3 2 1 22 22 C 1.46501 * 125.97530 * 359.96406 * 21 3 2 23 23 H 1.08996 * 109.46885 * 307.02244 * 1 2 3 24 24 H 1.09002 * 109.47262 * 67.02592 * 1 2 3 25 25 H 1.09006 * 109.47051 * 187.02413 * 1 2 3 26 26 H 1.07995 * 126.10547 * 0.03025 * 4 3 2 27 27 H 0.97001 * 119.99459 * 180.28275 * 6 5 4 28 28 H 1.09002 * 109.47085 * 300.00588 * 7 6 5 29 29 H 1.09000 * 109.46827 * 59.99845 * 7 6 5 30 30 H 1.09000 * 109.47326 * 60.00376 * 9 8 7 31 31 H 1.09005 * 109.47034 * 180.02562 * 9 8 7 32 32 H 1.08994 * 109.47422 * 299.99817 * 9 8 7 33 33 H 1.09003 * 109.47388 * 59.99758 * 10 8 7 34 34 H 1.09005 * 109.47330 * 179.97438 * 10 8 7 35 35 H 1.08994 * 109.47107 * 300.00126 * 10 8 7 36 36 H 1.08995 * 109.47010 * 300.00164 * 11 8 7 37 37 H 1.09004 * 109.46284 * 60.00432 * 11 8 7 38 38 H 0.97000 * 119.99785 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.46981 * 82.72293 * 22 21 3 40 40 H 1.08997 * 109.47311 * 202.72509 * 22 21 3 41 41 H 1.09001 * 109.47179 * 322.72495 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.3852 1.4260 -0.0628 5 6 3.5968 2.8134 -0.0397 6 7 4.8393 3.4557 -0.0900 7 6 6.0693 2.6652 -0.1814 8 6 7.2769 3.6037 -0.2205 9 6 7.1695 4.5226 -1.4392 10 6 7.3075 4.4490 1.0544 11 6 8.5617 2.7782 -0.3153 12 6 9.7511 3.7026 -0.3545 13 1 9.6054 4.7721 -0.3152 14 6 11.0254 3.1832 -0.4405 15 7 11.2029 1.8810 -0.4878 16 14 12.4999 4.3291 -0.4883 17 1 12.5296 5.1495 0.7491 18 1 13.7466 3.5279 -0.5817 19 1 12.3955 5.2210 -1.6711 20 7 2.4275 3.4035 0.0421 21 7 1.4364 2.4142 0.0684 22 6 -0.0077 2.6450 0.1550 23 1 -0.3633 0.6188 0.8205 24 1 -0.3634 0.4011 -0.9462 25 1 -0.3633 -1.0200 0.1257 26 1 4.1505 0.6664 -0.1222 27 1 4.8859 4.4242 -0.0643 28 1 6.1461 2.0109 0.6869 29 1 6.0474 2.0627 -1.0895 30 1 6.2543 5.1108 -1.3712 31 1 8.0301 5.1910 -1.4673 32 1 7.1478 3.9205 -2.3475 33 1 7.3840 3.7944 1.9226 34 1 8.1682 5.1174 1.0267 35 1 6.3924 5.0371 1.1224 36 1 8.6380 2.1239 0.5530 37 1 8.5401 2.1758 -1.2235 38 1 12.0994 1.5156 -0.5486 39 1 -0.3302 2.5444 1.1913 40 1 -0.2372 3.6492 -0.2012 41 1 -0.5302 1.9129 -0.4608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305691242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:08 Heat of formation + Delta-G solvation = 29.781720 kcal Electronic energy + Delta-G solvation = -20400.976120 eV Core-core repulsion = 17317.856623 eV Total energy + Delta-G solvation = -3083.119496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.40764 -39.59514 -38.86050 -35.77336 -34.36558 -32.99292 -30.77358 -29.04328 -28.23912 -27.92005 -27.37228 -26.33173 -24.59968 -22.39140 -21.39657 -19.70935 -18.81057 -18.31422 -17.54686 -16.98201 -16.61146 -16.32549 -15.87895 -15.78669 -15.34497 -15.24010 -14.65507 -14.42125 -14.30768 -14.30092 -13.91047 -13.77651 -13.72389 -12.89824 -12.71746 -12.64607 -12.29688 -12.26139 -12.20569 -12.09207 -11.94547 -11.48699 -11.37045 -10.94056 -10.81340 -10.72926 -10.46529 -9.31784 -8.59843 -8.10629 -6.17393 0.96581 1.37798 1.44410 1.46093 1.53268 1.99522 2.02427 2.46296 2.65883 3.23777 3.72896 4.04832 4.08409 4.16891 4.20177 4.28742 4.35701 4.44263 4.48684 4.63028 4.67913 4.75228 4.78259 4.82363 4.86377 5.03358 5.09082 5.16418 5.20678 5.45078 5.52045 5.53841 5.56082 5.61275 5.86015 5.94083 6.14874 6.36809 6.51895 6.70011 6.97170 7.13857 7.49673 9.01577 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.044433 B = 0.003405 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.007790 B = 8220.534501 C = 8643.343045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.307 6.307 3 C 0.301 3.699 4 C -0.356 4.356 5 C 0.357 3.643 6 N -0.706 5.706 7 C 0.162 3.838 8 C -0.063 4.063 9 C -0.120 4.120 10 C -0.120 4.120 11 C 0.043 3.957 12 C -0.515 4.515 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.955 3.045 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.268 1.268 20 N -0.378 5.378 21 N -0.405 5.405 22 C 0.075 3.925 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.130 0.870 26 H 0.144 0.856 27 H 0.406 0.594 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.060 0.940 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.260 0.740 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.404 0.013 1.137 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.213 6.213 3 C 0.131 3.869 4 C -0.389 4.389 5 C 0.098 3.902 6 N -0.348 5.348 7 C 0.037 3.963 8 C -0.064 4.064 9 C -0.177 4.177 10 C -0.177 4.177 11 C 0.005 3.995 12 C -0.553 4.553 13 H 0.086 0.914 14 C -0.199 4.199 15 N -0.578 5.578 16 Si 0.780 3.220 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.193 1.193 20 N -0.216 5.216 21 N -0.200 5.200 22 C -0.064 4.064 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.148 0.852 26 H 0.162 0.838 27 H 0.243 0.757 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -24.865 0.496 1.188 24.898 hybrid contribution 1.456 -0.301 -0.078 1.488 sum -23.409 0.196 1.110 23.436 Atomic orbital electron populations 1.24040 0.75607 1.07154 1.02879 1.86286 1.24242 1.21247 1.89516 1.19340 0.90754 0.79882 0.96973 1.20086 0.93405 0.95449 1.29911 1.19000 0.87159 0.90201 0.93790 1.43807 0.99738 1.08257 1.82962 1.21188 0.81890 0.93242 0.99978 1.20679 0.93462 0.95757 0.96502 1.21661 1.00861 0.98818 0.96359 1.21663 1.00946 0.99182 0.95915 1.18945 0.91588 0.94267 0.94675 1.21575 0.91438 0.93784 1.48546 0.91372 1.25884 1.02195 0.96308 0.95543 1.70098 1.22549 1.12726 1.52400 0.85651 0.78447 0.78825 0.79029 1.19347 1.21528 1.19349 1.77440 0.94430 1.10536 1.39206 1.48639 1.07519 1.01618 1.62263 1.22754 0.72932 1.06232 1.04500 0.90250 0.90516 0.85235 0.83813 0.75653 0.93309 0.93280 0.92134 0.92873 0.94166 0.94182 0.92869 0.92143 0.99097 0.99095 0.93161 0.89343 0.88518 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.40 113.37 1.07 1.03 16 2 O -0.31 -6.70 10.57 -90.66 -0.96 -7.66 16 3 C 0.30 8.20 7.78 83.63 0.65 8.85 16 4 C -0.36 -11.54 10.13 22.24 0.23 -11.32 16 5 C 0.36 11.87 8.15 133.38 1.09 12.96 16 6 N -0.71 -22.81 5.17 -344.02 -1.78 -24.59 16 7 C 0.16 5.78 4.49 86.38 0.39 6.17 16 8 C -0.06 -2.49 0.54 -52.18 -0.03 -2.52 16 9 C -0.12 -4.35 8.05 71.98 0.58 -3.77 16 10 C -0.12 -4.35 8.05 71.98 0.58 -3.78 16 11 C 0.04 2.18 4.04 29.85 0.12 2.30 16 12 C -0.52 -28.00 7.65 25.60 0.20 -27.80 16 13 H 0.07 3.51 5.68 -2.91 -0.02 3.50 16 14 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 15 N -0.94 -56.87 13.29 21.45 0.28 -56.58 16 16 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 N -0.38 -11.96 12.58 -54.60 -0.69 -12.65 16 21 N -0.40 -10.08 4.02 -481.31 -1.93 -12.01 16 22 C 0.07 0.94 9.58 127.77 1.22 2.17 16 23 H 0.08 0.52 5.79 -2.39 -0.01 0.51 16 24 H 0.08 0.50 6.61 -2.39 -0.02 0.48 16 25 H 0.13 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.14 4.69 7.90 -2.91 -0.02 4.67 16 27 H 0.41 12.25 6.29 -92.71 -0.58 11.67 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.84 6.86 -2.39 -0.02 1.82 16 31 H 0.05 2.05 6.62 -2.38 -0.02 2.03 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 2.05 6.62 -2.38 -0.02 2.04 16 35 H 0.06 1.84 6.86 -2.39 -0.02 1.82 16 36 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.09 0.79 7.63 -2.39 -0.02 0.78 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.12 0.75 4.64 -2.39 -0.01 0.74 16 Total: -1.00 -70.26 324.74 3.95 -66.31 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.45 Total: 16.44 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 6.55 Total: -15.37 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.11 Total: -105.83 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.96 Total: -7.66 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.26 3.95 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305691242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.089 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds