Wall clock time and date at job start Mon Mar 30 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46983 * 2 1 4 4 C 1.52997 * 109.47606 * 120.00828 * 2 1 3 5 5 C 1.53003 * 109.47063 * 64.99846 * 4 2 1 6 6 H 1.09000 * 109.47299 * 304.99769 * 5 4 2 7 7 N 1.46900 * 109.47335 * 65.00347 * 5 4 2 8 8 C 1.46896 * 110.99817 * 205.00006 * 7 5 4 9 9 H 1.08997 * 109.47472 * 324.99795 * 8 7 5 10 10 C 1.52998 * 109.47145 * 85.00066 * 8 7 5 11 11 C 1.50701 * 109.46913 * 205.00019 * 8 7 5 12 12 H 1.08003 * 120.00245 * 359.97438 * 11 8 7 13 13 C 1.37872 * 120.00294 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99848 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00277 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47088 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47026 * 120.00058 * 15 13 11 18 18 H 1.48508 * 109.47129 * 239.99600 * 15 13 11 19 19 C 1.50702 * 109.46888 * 185.00586 * 5 4 2 20 20 C 1.33390 * 125.20683 * 99.99986 * 19 5 4 21 21 C 1.38422 * 114.91870 * 180.02562 * 20 19 5 22 22 C 1.33383 * 114.92604 * 0.02562 * 21 20 19 23 23 S 1.75889 * 109.59330 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47172 * 299.99232 * 1 2 3 25 25 H 1.08999 * 109.47631 * 59.99289 * 1 2 3 26 26 H 1.09005 * 109.47011 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46932 * 240.00452 * 2 1 3 28 28 H 1.09003 * 109.46877 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47645 * 300.00363 * 3 2 1 30 30 H 1.09008 * 109.46625 * 60.01138 * 3 2 1 31 31 H 1.09004 * 109.46791 * 305.00128 * 4 2 1 32 32 H 1.08997 * 109.47419 * 185.00061 * 4 2 1 33 33 H 1.00895 * 110.99485 * 81.04280 * 7 5 4 34 34 H 1.08998 * 109.47142 * 299.99338 * 10 8 7 35 35 H 1.08996 * 109.47271 * 60.00072 * 10 8 7 36 36 H 1.09001 * 109.46997 * 180.02562 * 10 8 7 37 37 H 0.96996 * 120.00225 * 180.02562 * 14 13 11 38 38 H 1.08000 * 122.53444 * 359.97438 * 20 19 5 39 39 H 1.08006 * 122.53655 * 179.97438 * 21 20 19 40 40 H 1.07996 * 125.20664 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6353 -2.1956 1.1876 6 1 0.5564 -2.2709 1.0525 7 7 2.3166 -2.8439 0.0591 8 6 1.5640 -4.0161 -0.4071 9 1 1.0928 -4.5075 0.4441 10 6 0.4875 -3.5698 -1.3985 11 6 2.5038 -4.9790 -1.0858 12 1 3.5550 -4.7435 -1.1635 13 6 2.0216 -6.1601 -1.6086 14 7 0.7415 -6.4468 -1.5145 15 14 3.1864 -7.3533 -2.4505 16 1 4.5645 -6.8006 -2.4255 17 1 3.1618 -8.6556 -1.7372 18 1 2.7588 -7.5522 -3.8587 19 6 2.0295 -2.8787 2.4719 20 6 1.2045 -3.1456 3.4855 21 6 1.7936 -3.7809 4.5651 22 6 3.0969 -4.0294 4.4285 23 16 3.6480 -3.4448 2.8638 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8902 31 1 1.6055 -0.2620 2.1369 32 1 3.1264 -0.6445 1.2950 33 1 3.2625 -3.0954 0.3040 34 1 -0.1923 -2.8734 -0.9075 35 1 0.9587 -3.0785 -2.2497 36 1 -0.0712 -4.4396 -1.7440 37 1 0.4023 -7.2779 -1.8819 38 1 0.1566 -2.8850 3.4656 39 1 1.2399 -4.0540 5.4513 40 1 3.7186 -4.5160 5.1654 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309658045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:13 Heat of formation + Delta-G solvation = 11.704468 kcal Electronic energy + Delta-G solvation = -18860.768457 eV Core-core repulsion = 16187.325192 eV Total energy + Delta-G solvation = -2673.443265 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.32371 -36.60830 -34.91895 -32.70292 -30.42862 -28.00094 -27.02441 -26.56346 -25.11126 -23.80949 -21.58514 -19.96203 -19.41436 -18.84100 -16.96609 -16.21798 -15.37075 -14.92366 -14.60124 -14.06008 -13.90428 -13.45035 -13.21841 -12.76314 -12.50834 -12.33051 -12.14098 -11.98192 -11.75046 -11.51430 -11.42787 -11.06436 -10.83108 -10.80963 -10.58874 -10.46414 -10.21266 -10.16014 -10.15691 -10.02778 -9.85296 -8.80627 -8.47956 -8.24065 -8.08837 -7.36297 -6.00676 -4.06351 1.38167 2.00378 2.38842 3.09924 3.29670 3.37570 3.41800 4.41928 4.98010 5.13647 5.30922 5.31345 5.31976 5.45066 5.47435 5.77314 5.81474 5.86877 5.87501 5.97727 6.09554 6.11803 6.20886 6.27351 6.35329 6.44533 6.53677 6.63161 6.72984 6.80691 6.90757 6.93472 7.17189 7.24370 7.51913 7.79530 7.90819 8.26522 8.35791 8.64237 9.02822 9.59210 11.05713 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.007675 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.962299 B = 3647.337734 C = 4935.503484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.093 4.093 5 C 0.150 3.850 6 H 0.092 0.908 7 N -0.672 5.672 8 C 0.212 3.788 9 H 0.003 0.997 10 C -0.124 4.124 11 C -0.514 4.514 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.130 4.130 22 C -0.232 4.232 23 S 0.106 5.894 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.329 0.671 34 H 0.005 0.995 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.259 0.741 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 10.045 8.719 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.132 4.132 5 C 0.036 3.964 6 H 0.110 0.890 7 N -0.302 5.302 8 C 0.105 3.895 9 H 0.021 0.979 10 C -0.182 4.182 11 C -0.553 4.553 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.293 4.293 20 C -0.185 4.185 21 C -0.162 4.162 22 C -0.368 4.368 23 S 0.370 5.630 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.148 0.852 34 H 0.024 0.976 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.559 10.318 7.428 12.968 hybrid contribution -0.668 -1.583 1.134 2.059 sum 1.891 8.735 8.562 12.377 Atomic orbital electron populations 1.21893 0.95989 1.02049 1.00488 1.21007 0.95285 0.94803 0.99802 1.21841 1.00676 0.96810 1.00850 1.21606 1.00611 0.93670 0.97271 1.20428 0.99817 0.92605 0.83506 0.89044 1.60945 1.05297 1.32601 1.31404 1.19113 0.92056 0.84933 0.93399 0.97893 1.21747 0.97983 0.99722 0.98772 1.21262 0.94406 1.02495 1.37133 0.92292 1.24885 0.95093 0.97861 0.96045 1.69905 1.12507 1.24293 1.46117 0.86518 0.81223 0.80916 0.79214 1.19730 1.21152 1.21022 1.25902 0.96079 1.05368 1.01964 1.20056 1.00864 1.03780 0.93812 1.20088 0.94235 1.01829 1.00009 1.25512 0.99628 1.10367 1.01261 1.84179 1.10630 1.56700 1.11524 0.93711 0.93343 0.91984 0.89077 0.93063 0.93181 0.93505 0.92643 0.92273 0.85206 0.97585 0.94972 0.90176 0.93063 0.84877 0.85027 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.95 37.16 0.33 -1.69 16 2 C -0.09 -1.29 2.86 -90.62 -0.26 -1.55 16 3 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 4 C -0.09 -1.38 4.34 -26.73 -0.12 -1.50 16 5 C 0.15 2.63 2.10 -68.86 -0.14 2.48 16 6 H 0.09 1.70 5.31 -51.93 -0.28 1.43 16 7 N -0.67 -13.88 5.42 -102.17 -0.55 -14.43 16 8 C 0.21 5.27 2.41 -68.87 -0.17 5.10 16 9 H 0.00 0.09 7.64 -51.93 -0.40 -0.30 16 10 C -0.12 -3.01 9.17 37.16 0.34 -2.67 16 11 C -0.51 -14.03 8.59 -34.44 -0.30 -14.32 16 12 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 15 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.17 -3.00 5.11 -36.00 -0.18 -3.19 16 20 C -0.15 -2.50 10.04 -41.21 -0.41 -2.91 16 21 C -0.13 -1.91 10.18 -41.21 -0.42 -2.33 16 22 C -0.23 -3.38 11.23 29.04 0.33 -3.06 16 23 S 0.11 1.73 22.04 -107.50 -2.37 -0.63 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.96 5.21 -51.93 -0.27 0.69 16 27 H 0.09 1.52 7.62 -51.93 -0.40 1.13 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.33 6.90 6.80 -39.29 -0.27 6.63 16 34 H 0.01 0.12 6.17 -51.93 -0.32 -0.20 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -28.07 329.18 -9.53 -37.60 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.43 Total: 6.28 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -0.75 Total: -25.38 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.07 Total: -39.24 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.37 Total: -0.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.07 -9.53 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309658045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.309 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds