Wall clock time and date at job start Mon Mar 30 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46983 * 2 1 4 4 C 1.52997 * 109.47606 * 120.00828 * 2 1 3 5 5 C 1.53003 * 109.47063 * 64.99846 * 4 2 1 6 6 H 1.09000 * 109.47299 * 304.99769 * 5 4 2 7 7 N 1.46900 * 109.47335 * 65.00347 * 5 4 2 8 8 C 1.46896 * 110.99817 * 205.00006 * 7 5 4 9 9 H 1.08997 * 109.47472 * 324.99795 * 8 7 5 10 10 C 1.52998 * 109.47145 * 85.00066 * 8 7 5 11 11 C 1.50701 * 109.46913 * 205.00019 * 8 7 5 12 12 H 1.08003 * 120.00245 * 359.97438 * 11 8 7 13 13 C 1.37872 * 120.00294 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99848 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00277 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47088 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47026 * 120.00058 * 15 13 11 18 18 H 1.48508 * 109.47129 * 239.99600 * 15 13 11 19 19 C 1.50702 * 109.46888 * 185.00586 * 5 4 2 20 20 C 1.33390 * 125.20683 * 99.99986 * 19 5 4 21 21 C 1.38422 * 114.91870 * 180.02562 * 20 19 5 22 22 C 1.33383 * 114.92604 * 0.02562 * 21 20 19 23 23 S 1.75889 * 109.59330 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47172 * 299.99232 * 1 2 3 25 25 H 1.08999 * 109.47631 * 59.99289 * 1 2 3 26 26 H 1.09005 * 109.47011 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46932 * 240.00452 * 2 1 3 28 28 H 1.09003 * 109.46877 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47645 * 300.00363 * 3 2 1 30 30 H 1.09008 * 109.46625 * 60.01138 * 3 2 1 31 31 H 1.09004 * 109.46791 * 305.00128 * 4 2 1 32 32 H 1.08997 * 109.47419 * 185.00061 * 4 2 1 33 33 H 1.00895 * 110.99485 * 81.04280 * 7 5 4 34 34 H 1.08998 * 109.47142 * 299.99338 * 10 8 7 35 35 H 1.08996 * 109.47271 * 60.00072 * 10 8 7 36 36 H 1.09001 * 109.46997 * 180.02562 * 10 8 7 37 37 H 0.96996 * 120.00225 * 180.02562 * 14 13 11 38 38 H 1.08000 * 122.53444 * 359.97438 * 20 19 5 39 39 H 1.08006 * 122.53655 * 179.97438 * 21 20 19 40 40 H 1.07996 * 125.20664 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6353 -2.1956 1.1876 6 1 0.5564 -2.2709 1.0525 7 7 2.3166 -2.8439 0.0591 8 6 1.5640 -4.0161 -0.4071 9 1 1.0928 -4.5075 0.4441 10 6 0.4875 -3.5698 -1.3985 11 6 2.5038 -4.9790 -1.0858 12 1 3.5550 -4.7435 -1.1635 13 6 2.0216 -6.1601 -1.6086 14 7 0.7415 -6.4468 -1.5145 15 14 3.1864 -7.3533 -2.4505 16 1 4.5645 -6.8006 -2.4255 17 1 3.1618 -8.6556 -1.7372 18 1 2.7588 -7.5522 -3.8587 19 6 2.0295 -2.8787 2.4719 20 6 1.2045 -3.1456 3.4855 21 6 1.7936 -3.7809 4.5651 22 6 3.0969 -4.0294 4.4285 23 16 3.6480 -3.4448 2.8638 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8902 31 1 1.6055 -0.2620 2.1369 32 1 3.1264 -0.6445 1.2950 33 1 3.2625 -3.0954 0.3040 34 1 -0.1923 -2.8734 -0.9075 35 1 0.9587 -3.0785 -2.2497 36 1 -0.0712 -4.4396 -1.7440 37 1 0.4023 -7.2779 -1.8819 38 1 0.1566 -2.8850 3.4656 39 1 1.2399 -4.0540 5.4513 40 1 3.7186 -4.5160 5.1654 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309658045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:13 Heat of formation + Delta-G solvation = -2.873687 kcal Electronic energy + Delta-G solvation = -18861.400613 eV Core-core repulsion = 16187.325192 eV Total energy + Delta-G solvation = -2674.075421 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.68722 -37.88691 -36.51313 -34.47816 -32.12331 -29.44662 -28.28181 -27.86100 -27.17584 -25.05087 -22.97708 -21.78226 -20.66265 -20.08832 -18.61600 -17.87251 -16.99135 -16.41595 -15.97495 -15.57824 -15.37778 -14.91530 -14.62330 -14.31583 -13.78463 -13.60238 -13.53192 -13.32791 -13.06103 -12.96709 -12.81357 -12.68372 -12.62238 -12.35499 -12.29062 -12.16533 -11.87612 -11.66213 -11.49635 -11.33183 -11.26097 -10.83955 -10.57030 -9.50094 -9.37060 -9.07871 -8.12116 -6.24965 0.15042 0.76075 1.16169 1.39166 1.41251 1.52620 1.89198 2.41328 3.16860 3.62922 3.73261 4.17950 4.19538 4.24692 4.32663 4.49972 4.65861 4.69584 4.72617 4.87769 4.89720 4.95278 4.99614 5.06772 5.09678 5.17609 5.20890 5.24294 5.27312 5.40403 5.43705 5.54624 5.61455 5.62015 5.70456 5.75773 5.90741 6.24507 6.45454 6.76493 6.99056 7.44764 8.93547 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.007675 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.962299 B = 3647.337734 C = 4935.503484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.083 4.083 5 C 0.153 3.847 6 H 0.078 0.922 7 N -0.667 5.667 8 C 0.225 3.775 9 H -0.033 1.033 10 C -0.110 4.110 11 C -0.531 4.531 12 H 0.055 0.945 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.955 3.045 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.280 1.280 19 C -0.202 4.202 20 C -0.157 4.157 21 C -0.138 4.138 22 C -0.222 4.222 23 S 0.079 5.921 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.327 0.673 34 H 0.024 0.976 35 H 0.027 0.973 36 H 0.053 0.947 37 H 0.261 0.739 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 10.712 9.811 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.196 4.196 4 C -0.121 4.121 5 C 0.041 3.959 6 H 0.096 0.904 7 N -0.297 5.297 8 C 0.116 3.884 9 H -0.016 1.016 10 C -0.169 4.169 11 C -0.570 4.570 12 H 0.073 0.927 13 C -0.184 4.184 14 N -0.556 5.556 15 Si 0.781 3.219 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.205 1.205 19 C -0.321 4.321 20 C -0.188 4.188 21 C -0.168 4.168 22 C -0.358 4.358 23 S 0.342 5.658 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.145 0.855 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.161 0.839 39 H 0.180 0.820 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.087 11.005 8.527 14.260 hybrid contribution -0.862 -1.781 0.872 2.163 sum 2.224 9.224 9.400 13.356 Atomic orbital electron populations 1.21851 0.95558 1.00885 1.01764 1.20965 0.95648 0.96089 0.98153 1.21776 1.00783 0.95042 1.01957 1.21538 1.00602 0.91744 0.98265 1.20391 0.98651 0.94000 0.82874 0.90430 1.60864 1.04932 1.30449 1.33444 1.18804 0.91858 0.85776 0.91946 1.01550 1.21544 0.97908 0.98843 0.98572 1.21572 0.94613 1.03405 1.37377 0.92695 1.25651 0.96536 0.99499 0.96669 1.70029 1.13989 1.24764 1.46810 0.85546 0.79463 0.78689 0.78187 1.19107 1.20794 1.20545 1.25852 0.96892 1.07006 1.02317 1.20381 1.01341 1.03086 0.93994 1.20401 0.94493 1.01389 1.00560 1.25901 0.99974 1.09475 1.00408 1.84220 1.10665 1.57472 1.13468 0.91923 0.92585 0.94282 0.91928 0.92889 0.92403 0.92059 0.91012 0.92385 0.85463 0.95704 0.95397 0.92772 0.92986 0.83899 0.82024 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.95 71.98 0.64 -3.15 16 2 C -0.09 -2.49 2.86 -10.80 -0.03 -2.52 16 3 C -0.14 -3.03 9.19 71.98 0.66 -2.37 16 4 C -0.08 -2.40 4.34 30.59 0.13 -2.27 16 5 C 0.15 5.43 2.10 44.17 0.09 5.52 16 6 H 0.08 2.95 5.31 -2.39 -0.01 2.94 16 7 N -0.67 -28.15 5.42 -477.16 -2.58 -30.74 16 8 C 0.22 11.45 2.41 44.17 0.11 11.56 16 9 H -0.03 -1.91 7.64 -2.39 -0.02 -1.92 16 10 C -0.11 -5.51 9.17 71.98 0.66 -4.84 16 11 C -0.53 -29.49 8.59 25.60 0.22 -29.27 16 12 H 0.05 3.02 7.62 -2.91 -0.02 3.00 16 13 C 0.02 0.87 5.30 84.65 0.45 1.32 16 14 N -0.92 -53.34 11.32 21.45 0.24 -53.10 16 15 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 C -0.20 -6.93 5.11 24.59 0.13 -6.81 16 20 C -0.16 -4.91 10.04 21.22 0.21 -4.70 16 21 C -0.14 -3.74 10.18 21.21 0.22 -3.53 16 22 C -0.22 -6.00 11.23 66.72 0.75 -5.25 16 23 S 0.08 2.53 22.04 -56.49 -1.25 1.29 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.20 5.21 -2.38 -0.01 1.19 16 27 H 0.06 2.10 7.62 -2.38 -0.02 2.08 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.33 14.01 6.80 -89.70 -0.61 13.40 16 34 H 0.02 1.09 6.17 -2.39 -0.01 1.08 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 2.98 6.07 -2.39 -0.01 2.97 16 37 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 40 H 0.19 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -60.53 329.18 3.08 -57.45 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.40 Total: 25.22 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 4.24 Total: -46.31 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -2.34 Total: -83.83 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.25 Total: 1.29 kcal Total: -60.53 3.08 -57.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309658045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.573 kcal (2) G-P(sol) polarization free energy of solvation -60.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds