Wall clock time and date at job start Mon Mar 30 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 H 1.09006 * 109.46792 * 54.99494 * 16 15 14 18 18 C 1.52999 * 109.46969 * 295.00135 * 16 15 14 19 19 C 1.50697 * 109.47206 * 174.99987 * 16 15 14 20 20 C 1.33390 * 125.20452 * 239.99995 * 19 16 15 21 21 C 1.38416 * 114.92369 * 179.97438 * 20 19 16 22 22 C 1.33388 * 114.91949 * 359.97438 * 21 20 19 23 23 S 1.75884 * 125.20194 * 59.69455 * 19 16 15 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 32 32 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 33 33 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 34 34 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 35 35 H 1.08998 * 109.47481 * 299.99855 * 18 16 15 36 36 H 1.09000 * 109.47288 * 60.00036 * 18 16 15 37 37 H 1.09000 * 109.47201 * 179.97438 * 18 16 15 38 38 H 1.08008 * 122.53469 * 0.02562 * 20 19 16 39 39 H 1.07996 * 122.54014 * 179.97438 * 21 20 19 40 40 H 1.08010 * 125.20317 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 1 0.6242 0.3446 4.8686 18 6 2.4113 1.5477 4.8646 19 6 2.0817 -0.5500 6.1454 20 6 1.2272 -0.9556 7.0858 21 6 1.8065 -1.6201 8.1530 22 6 3.1316 -1.7545 8.0789 23 16 3.7168 -1.0195 6.5920 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 1.8938 -0.0449 -5.6799 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 1.9881 0.9873 2.3966 33 1 1.6920 -1.6245 3.7300 34 1 3.2126 -0.7037 3.6401 35 1 3.4903 1.3947 4.8850 36 1 2.1375 2.0840 3.9560 37 1 2.1100 2.1307 5.7349 38 1 0.1636 -0.7797 7.0192 39 1 1.2295 -2.0008 8.9827 40 1 3.7501 -2.2427 8.8175 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309778311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:38 Heat of formation + Delta-G solvation = 7.367404 kcal Electronic energy + Delta-G solvation = -17581.186176 eV Core-core repulsion = 14907.554842 eV Total energy + Delta-G solvation = -2673.631334 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.57516 -37.20289 -35.30762 -32.88144 -31.57036 -28.76370 -27.55951 -26.34751 -24.84420 -23.64802 -21.94411 -20.96529 -19.53169 -19.10489 -17.14860 -16.69909 -16.01207 -15.56604 -14.69416 -14.45965 -14.21623 -13.96532 -13.29648 -13.24054 -13.03178 -12.89283 -12.62404 -12.40179 -12.28619 -11.75400 -11.62739 -11.47515 -11.32695 -11.15995 -10.94646 -10.80374 -10.65625 -10.41462 -9.77808 -9.72000 -9.40836 -9.04568 -8.83710 -8.68066 -8.49943 -8.20636 -6.00386 -3.97149 0.79325 1.43066 1.81704 2.53773 3.32800 3.40080 3.43760 4.19377 4.48414 4.67404 4.79965 4.85083 4.89412 5.17249 5.33224 5.34366 5.39325 5.51340 5.54349 5.64136 5.75158 5.81176 5.86997 5.97433 6.02974 6.04996 6.14802 6.27985 6.32145 6.43742 6.60709 6.85938 7.05153 7.16414 7.24235 7.33202 7.47974 7.59309 7.84707 8.59321 9.05507 9.62659 11.13081 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.003157 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.775905 B = 8868.240989 C = 9195.894218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.061 3.939 14 N -0.686 5.686 15 C 0.065 3.935 16 C -0.022 4.022 17 H 0.099 0.901 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.145 4.145 21 C -0.132 4.132 22 C -0.223 4.223 23 S 0.096 5.904 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.012 0.988 28 H 0.011 0.989 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.338 0.662 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -2.189 26.234 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.317 5.317 15 C -0.065 4.065 16 C -0.042 4.042 17 H 0.117 0.883 18 C -0.207 4.207 19 C -0.275 4.275 20 C -0.175 4.175 21 C -0.163 4.163 22 C -0.359 4.359 23 S 0.360 5.640 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.157 0.843 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.065 -2.319 25.420 25.709 hybrid contribution 0.141 -0.972 0.456 1.083 sum 3.206 -3.291 25.876 26.281 Atomic orbital electron populations 1.21600 0.95246 1.00646 1.00687 1.21008 0.96376 0.98996 0.92871 0.92223 1.19616 0.95702 0.95913 0.93507 1.21137 1.35207 1.09565 0.89090 0.90811 1.25034 0.95686 0.96939 0.95966 1.69921 1.47251 1.39334 0.97993 0.86803 0.80648 0.84393 0.77569 1.20359 1.21505 1.19147 1.22181 0.97129 0.97814 0.89609 1.60532 1.63999 1.05884 1.01290 1.22012 0.97206 0.98074 0.89199 1.19785 1.01930 0.93761 0.88765 0.88322 1.21924 1.00132 0.95969 1.02650 1.24598 0.95669 1.05952 1.01274 1.20164 1.00980 1.01930 0.94409 1.20164 0.94130 1.01847 1.00153 1.25619 0.98996 1.09031 1.02212 1.84345 1.08907 1.54546 1.16239 0.93673 0.92253 0.94232 0.96967 0.97044 0.92849 0.91520 0.95794 0.84288 0.90882 0.95412 0.92725 0.91213 0.92169 0.84280 0.84473 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.07 -1.45 2.48 -90.62 -0.22 -1.67 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.54 8.96 -34.44 -0.31 -14.84 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.12 13.96 55.43 0.77 -27.34 16 9 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.06 1.00 5.07 -3.83 -0.02 0.98 16 14 N -0.69 -9.36 5.95 -113.78 -0.68 -10.04 16 15 C 0.07 0.77 5.05 -3.82 -0.02 0.75 16 16 C -0.02 -0.22 2.97 -91.77 -0.27 -0.49 16 17 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 18 C -0.15 -1.37 8.89 37.16 0.33 -1.04 16 19 C -0.16 -1.57 5.09 -36.00 -0.18 -1.75 16 20 C -0.14 -1.36 10.01 -41.21 -0.41 -1.77 16 21 C -0.13 -1.13 10.18 -41.21 -0.42 -1.55 16 22 C -0.22 -1.90 11.23 29.04 0.33 -1.57 16 23 S 0.10 0.92 23.04 -107.50 -2.48 -1.55 16 24 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 25 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.34 4.35 6.98 -39.29 -0.27 4.08 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.51 8.01 -51.93 -0.42 0.09 16 36 H 0.07 0.64 6.68 -51.93 -0.35 0.29 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -30.33 334.99 -9.84 -40.16 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.77 Total: -0.04 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -1.07 Total: -23.55 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.10 Total: -37.38 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.48 Total: -1.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.33 -9.84 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309778311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.529 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds