Wall clock time and date at job start Mon Mar 30 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99583 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00273 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99722 * 9 7 5 11 11 H 1.48506 * 109.47062 * 209.99913 * 9 7 5 12 12 H 1.48495 * 109.46994 * 329.99733 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 H 1.09006 * 109.46792 * 54.99494 * 16 15 14 18 18 C 1.52999 * 109.46969 * 295.00135 * 16 15 14 19 19 C 1.50697 * 109.47206 * 174.99987 * 16 15 14 20 20 C 1.33390 * 125.20452 * 239.99995 * 19 16 15 21 21 C 1.38416 * 114.92369 * 179.97438 * 20 19 16 22 22 C 1.33388 * 114.91949 * 359.97438 * 21 20 19 23 23 S 1.75884 * 125.20194 * 59.69455 * 19 16 15 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 0.97001 * 119.99531 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 32 32 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 33 33 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 34 34 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 35 35 H 1.08998 * 109.47481 * 299.99855 * 18 16 15 36 36 H 1.09000 * 109.47288 * 60.00036 * 18 16 15 37 37 H 1.09000 * 109.47201 * 179.97438 * 18 16 15 38 38 H 1.08008 * 122.53469 * 0.02562 * 20 19 16 39 39 H 1.07996 * 122.54014 * 179.97438 * 21 20 19 40 40 H 1.08010 * 125.20317 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7993 9 14 2.9637 -1.9885 -3.9027 10 1 2.0244 -3.1327 -4.0199 11 1 3.8127 -1.9183 -5.1191 12 1 3.8253 -2.1757 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 1 0.6242 0.3446 4.8686 18 6 2.4113 1.5477 4.8646 19 6 2.0817 -0.5500 6.1454 20 6 1.2272 -0.9556 7.0858 21 6 1.8065 -1.6201 8.1530 22 6 3.1316 -1.7545 8.0789 23 16 3.7168 -1.0195 6.5920 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 1.8938 -0.0449 -5.6799 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 1.9881 0.9873 2.3966 33 1 1.6920 -1.6245 3.7300 34 1 3.2126 -0.7037 3.6401 35 1 3.4903 1.3947 4.8850 36 1 2.1375 2.0840 3.9560 37 1 2.1100 2.1307 5.7349 38 1 0.1636 -0.7797 7.0192 39 1 1.2295 -2.0008 8.9827 40 1 3.7501 -2.2427 8.8175 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309778311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:37 Heat of formation + Delta-G solvation = -9.827023 kcal Electronic energy + Delta-G solvation = -17581.931782 eV Core-core repulsion = 14907.554842 eV Total energy + Delta-G solvation = -2674.376940 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.38333 -38.33082 -36.58271 -34.63660 -33.11122 -29.66779 -29.23115 -27.50992 -26.02791 -24.68093 -23.55942 -21.82151 -20.72668 -20.19758 -18.93606 -17.80942 -16.94950 -16.51508 -16.35623 -15.74850 -15.52244 -15.12133 -14.75311 -14.43297 -14.20225 -13.93977 -13.60069 -13.50110 -13.40694 -13.08535 -13.01225 -12.79836 -12.54277 -12.39134 -12.21009 -12.02250 -12.00166 -11.70236 -11.50892 -11.41423 -11.17216 -11.01934 -10.73392 -9.54453 -9.40579 -9.30301 -8.25761 -6.27894 0.11456 0.74963 1.14660 1.36073 1.37370 1.49146 1.87739 2.37854 3.09466 3.17799 3.86880 3.96289 3.99932 4.18769 4.27249 4.30547 4.43713 4.48828 4.65882 4.71002 4.74855 4.80964 4.86290 4.91169 4.96678 4.97965 5.10203 5.14608 5.24474 5.31463 5.40573 5.42812 5.45975 5.56002 5.62434 5.71404 5.73554 6.06664 6.35263 6.48858 6.79818 7.35621 8.91012 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.003157 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.775905 B = 8868.240989 C = 9195.894218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 H 0.051 0.949 4 C -0.007 4.007 5 C -0.518 4.518 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.074 3.926 14 N -0.684 5.684 15 C 0.070 3.930 16 C -0.014 4.014 17 H 0.099 0.901 18 C -0.146 4.146 19 C -0.172 4.172 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.221 4.221 23 S 0.074 5.926 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.264 0.736 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.344 0.656 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -3.675 28.516 28.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.045 4.045 5 C -0.556 4.556 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.172 1.172 13 C -0.055 4.055 14 N -0.317 5.317 15 C -0.060 4.060 16 C -0.034 4.034 17 H 0.117 0.883 18 C -0.204 4.204 19 C -0.290 4.290 20 C -0.178 4.178 21 C -0.171 4.171 22 C -0.356 4.356 23 S 0.337 5.663 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.641 -3.798 27.731 28.226 hybrid contribution -0.099 -0.435 -0.198 0.488 sum 3.542 -4.232 27.533 28.081 Atomic orbital electron populations 1.21501 0.94942 1.00675 1.00188 1.20885 0.96564 0.98483 0.92911 0.93024 1.19574 0.95825 0.95761 0.93378 1.21457 1.34229 1.08696 0.91200 0.94604 1.25999 0.97043 1.00926 0.95558 1.70077 1.49128 1.41630 0.98701 0.85697 0.79356 0.79610 0.78202 1.19331 1.21163 1.17164 1.21905 0.97003 0.97564 0.89040 1.60463 1.64124 1.06074 1.00990 1.21987 0.97037 0.97974 0.88952 1.19668 1.01916 0.93781 0.88081 0.88292 1.21901 0.99902 0.95645 1.02962 1.24600 0.95887 1.06935 1.01593 1.20441 1.01603 1.01358 0.94393 1.20444 0.94379 1.01669 1.00583 1.25930 0.99329 1.08508 1.01841 1.84402 1.09249 1.55189 1.17463 0.91405 0.95416 0.93880 0.96689 0.96578 0.92690 0.91287 0.95643 0.83674 0.91405 0.95523 0.92969 0.91219 0.91482 0.83187 0.82328 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -2.68 2.48 -10.79 -0.03 -2.70 16 3 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.01 -0.35 3.52 29.85 0.10 -0.25 16 5 C -0.52 -29.97 8.96 25.60 0.23 -29.74 16 6 H 0.04 2.28 7.30 -2.91 -0.02 2.26 16 7 C 0.00 0.05 5.47 84.65 0.46 0.51 16 8 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 9 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 13 C 0.07 2.28 5.07 86.30 0.44 2.72 16 14 N -0.68 -17.40 5.95 -513.89 -3.06 -20.46 16 15 C 0.07 1.54 5.05 86.30 0.44 1.97 16 16 C -0.01 -0.25 2.97 -11.54 -0.03 -0.29 16 17 H 0.10 1.82 8.09 -2.38 -0.02 1.80 16 18 C -0.15 -2.48 8.89 71.98 0.64 -1.84 16 19 C -0.17 -3.16 5.09 24.59 0.13 -3.04 16 20 C -0.15 -2.46 10.01 21.21 0.21 -2.25 16 21 C -0.14 -2.05 10.18 21.21 0.22 -1.84 16 22 C -0.22 -3.26 11.23 66.72 0.75 -2.51 16 23 S 0.07 1.31 23.04 -56.49 -1.30 0.01 16 24 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 25 H 0.03 1.19 6.95 -2.39 -0.02 1.17 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 28 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.34 8.25 6.98 -89.69 -0.63 7.62 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.90 8.01 -2.39 -0.02 0.89 16 36 H 0.07 1.17 6.68 -2.39 -0.02 1.15 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -65.35 334.99 2.33 -63.02 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.32 Total: 13.93 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 4.19 Total: -42.98 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.76 Total: -80.84 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.30 Total: 0.01 kcal Total: -65.35 2.33 -63.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309778311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.197 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds