Wall clock time and date at job start Mon Mar 30 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47086 * 2 1 4 4 C 1.53000 * 109.46806 * 240.00408 * 2 1 3 5 5 N 1.46905 * 109.47234 * 64.99923 * 4 2 1 6 6 C 1.46902 * 110.99800 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47046 * 304.99696 * 7 6 5 9 9 C 1.52997 * 109.47021 * 65.00073 * 7 6 5 10 10 C 1.52999 * 109.46811 * 184.99853 * 7 6 5 11 11 C 1.50704 * 109.46935 * 175.00197 * 10 7 6 12 12 H 1.08000 * 120.00086 * 359.97438 * 11 10 7 13 13 C 1.37884 * 119.99742 * 180.02562 * 11 10 7 14 14 N 1.31510 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99621 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46857 * 90.00130 * 15 13 11 17 17 H 1.48499 * 109.46841 * 209.99998 * 15 13 11 18 18 H 1.48498 * 109.47151 * 330.00350 * 15 13 11 19 19 C 1.50704 * 109.47555 * 120.00745 * 2 1 3 20 20 C 1.33382 * 125.19820 * 239.72124 * 19 2 1 21 21 C 1.38430 * 114.92041 * 179.85615 * 20 19 2 22 22 C 1.33396 * 114.91763 * 0.42430 * 21 20 19 23 23 S 1.75880 * 125.20447 * 60.01931 * 19 2 1 24 24 H 1.09003 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46367 * 299.99634 * 1 2 3 26 26 H 1.08999 * 109.47169 * 59.99380 * 1 2 3 27 27 H 1.09002 * 109.47089 * 304.99913 * 4 2 1 28 28 H 1.09001 * 109.47170 * 184.99693 * 4 2 1 29 29 H 1.00904 * 110.99696 * 56.04558 * 5 4 2 30 30 H 1.08993 * 109.47737 * 60.00169 * 6 5 4 31 31 H 1.09000 * 109.47263 * 299.99731 * 6 5 4 32 32 H 1.09002 * 109.46905 * 179.97438 * 9 7 6 33 33 H 1.09004 * 109.47446 * 299.99458 * 9 7 6 34 34 H 1.08992 * 109.47518 * 59.99913 * 9 7 6 35 35 H 1.09003 * 109.46920 * 294.99990 * 10 7 6 36 36 H 1.08995 * 109.47278 * 54.99923 * 10 7 6 37 37 H 0.97001 * 119.99765 * 179.97438 * 14 13 11 38 38 H 1.08001 * 122.54628 * 0.02562 * 20 19 2 39 39 H 1.08001 * 122.54532 * 180.19652 * 21 20 19 40 40 H 1.07991 * 125.20394 * 179.79241 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0376 -2.4457 6 6 2.1246 -0.6270 -3.6673 7 6 1.7022 0.1913 -4.8893 8 1 0.6234 0.3451 -4.8683 9 6 2.4112 1.5468 -4.8652 10 6 2.0853 -0.5621 -6.1646 11 6 1.5611 0.1834 -7.3650 12 1 1.0096 1.1023 -7.2315 13 6 1.7849 -0.3083 -8.6336 14 7 2.4561 -1.4275 -8.7960 15 14 1.1346 0.6153 -10.1213 16 1 2.1569 1.5867 -10.5865 17 1 0.8358 -0.3487 -11.2106 18 1 -0.1058 1.3421 -9.7494 19 6 2.0325 -0.7106 1.2304 20 6 2.8069 -0.1663 2.1701 21 6 3.1411 -1.0131 3.2130 22 6 2.6452 -2.2476 3.1155 23 16 1.6935 -2.3863 1.6429 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6053 -1.7197 -1.2953 28 1 3.1263 -0.7994 -1.2058 29 1 1.9881 0.9875 -2.3966 30 1 1.6902 -1.6246 -3.7299 31 1 3.2115 -0.7049 -3.6407 32 1 2.1106 2.1296 -5.7359 33 1 2.1383 2.0836 -3.9565 34 1 3.4900 1.3931 -4.8862 35 1 3.1707 -0.6380 -6.2296 36 1 1.6519 -1.5619 -6.1401 37 1 2.6131 -1.7737 -9.6885 38 1 3.1454 0.8582 2.1226 39 1 3.7595 -0.6992 4.0409 40 1 2.8036 -3.0405 3.8314 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309778312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:40 Heat of formation + Delta-G solvation = 3.614207 kcal Electronic energy + Delta-G solvation = -17531.597405 eV Core-core repulsion = 14857.803320 eV Total energy + Delta-G solvation = -2673.794085 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.50624 -37.12884 -35.19097 -32.91716 -31.43012 -28.66883 -27.03392 -26.23420 -24.80703 -23.72979 -22.12822 -21.06147 -19.47426 -18.95184 -17.09840 -16.35776 -15.81853 -15.51220 -14.74492 -14.51796 -14.20883 -13.91171 -13.32965 -13.07297 -12.93595 -12.64449 -12.39698 -12.22649 -12.07765 -11.93584 -11.51892 -11.44075 -11.21322 -11.07109 -10.85003 -10.74141 -10.64650 -10.31423 -10.18440 -9.70050 -9.15400 -8.96585 -8.78106 -8.62575 -8.31575 -8.13793 -5.96175 -3.97276 0.83724 1.47744 1.86706 2.56969 3.33955 3.40326 3.43797 4.25047 4.49641 4.76735 4.80733 4.89241 5.12242 5.23178 5.36445 5.39637 5.45986 5.62923 5.65997 5.80181 5.84839 5.91012 5.93198 6.05446 6.08952 6.11502 6.27282 6.29814 6.33851 6.47929 6.57407 6.94885 7.11932 7.18724 7.36099 7.64967 7.71897 7.87835 8.04265 8.47994 9.09165 9.66037 11.15405 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045718 B = 0.002919 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.302718 B = 9590.178797 C = 9768.294717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.021 4.021 3 H 0.086 0.914 4 C 0.064 3.936 5 N -0.687 5.687 6 C 0.065 3.935 7 C -0.084 4.084 8 H 0.065 0.935 9 C -0.134 4.134 10 C 0.028 3.972 11 C -0.512 4.512 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.133 4.133 22 C -0.225 4.225 23 S 0.105 5.895 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.337 0.663 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 1.088 23.680 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 H 0.104 0.896 4 C -0.066 4.066 5 N -0.319 5.319 6 C -0.064 4.064 7 C -0.103 4.103 8 H 0.084 0.916 9 C -0.191 4.191 10 C -0.010 4.010 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.275 4.275 20 C -0.179 4.179 21 C -0.163 4.163 22 C -0.361 4.361 23 S 0.368 5.632 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.365 -0.499 22.848 22.894 hybrid contribution 1.623 1.639 -0.078 2.308 sum 0.259 1.141 22.769 22.799 Atomic orbital electron populations 1.21789 0.93057 1.02242 1.02372 1.19773 0.96974 0.98382 0.89014 0.89610 1.22026 0.97521 0.97850 0.89190 1.60563 1.64252 1.05714 1.01343 1.22139 0.96777 0.98410 0.89060 1.21218 0.99930 0.94739 0.94378 0.91610 1.21741 0.99522 0.97747 1.00112 1.19111 0.96591 0.95161 0.90128 1.21242 1.34473 1.08385 0.90977 0.92562 1.25026 0.95440 0.95050 0.99068 1.69967 1.40977 1.20474 1.22272 0.86630 0.79294 0.79601 0.82699 1.20774 1.21305 1.19881 1.24633 1.04215 0.97216 1.01471 1.20139 1.01317 1.01573 0.94835 1.20147 1.02681 0.93214 1.00305 1.25633 1.06296 1.01615 1.02507 1.84374 1.50898 1.10062 1.17870 0.92793 0.93145 0.90286 0.90995 0.95307 0.84395 0.91471 0.95838 0.91873 0.94955 0.94069 0.96787 0.96662 0.93107 0.84481 0.84552 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.00 37.16 0.33 -1.12 16 2 C -0.02 -0.22 2.91 -91.77 -0.27 -0.49 16 3 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 4 C 0.06 0.81 4.98 -3.82 -0.02 0.79 16 5 N -0.69 -9.87 5.95 -113.77 -0.68 -10.55 16 6 C 0.06 1.13 5.14 -3.82 -0.02 1.11 16 7 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 8 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 9 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 10 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 11 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 12 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 13 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 C -0.16 -1.66 5.09 -36.00 -0.18 -1.84 16 20 C -0.15 -1.45 10.01 -41.21 -0.41 -1.86 16 21 C -0.13 -1.18 10.18 -41.20 -0.42 -1.60 16 22 C -0.23 -2.00 11.23 29.04 0.33 -1.68 16 23 S 0.10 1.06 23.03 -107.50 -2.48 -1.42 16 24 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.34 4.54 6.98 -39.29 -0.27 4.26 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 33 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -29.74 338.58 -10.21 -39.95 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.80 Total: -0.04 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -1.08 Total: -23.39 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.06 Total: -36.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.48 Total: -1.42 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.74 -10.21 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309778312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.563 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds