Wall clock time and date at job start Mon Mar 30 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47086 * 2 1 4 4 C 1.53000 * 109.46806 * 240.00408 * 2 1 3 5 5 N 1.46905 * 109.47234 * 64.99923 * 4 2 1 6 6 C 1.46902 * 110.99800 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47046 * 304.99696 * 7 6 5 9 9 C 1.52997 * 109.47021 * 65.00073 * 7 6 5 10 10 C 1.52999 * 109.46811 * 184.99853 * 7 6 5 11 11 C 1.50704 * 109.46935 * 175.00197 * 10 7 6 12 12 H 1.08000 * 120.00086 * 359.97438 * 11 10 7 13 13 C 1.37884 * 119.99742 * 180.02562 * 11 10 7 14 14 N 1.31510 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99621 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46857 * 90.00130 * 15 13 11 17 17 H 1.48499 * 109.46841 * 209.99998 * 15 13 11 18 18 H 1.48498 * 109.47151 * 330.00350 * 15 13 11 19 19 C 1.50704 * 109.47555 * 120.00745 * 2 1 3 20 20 C 1.33382 * 125.19820 * 239.72124 * 19 2 1 21 21 C 1.38430 * 114.92041 * 179.85615 * 20 19 2 22 22 C 1.33396 * 114.91763 * 0.42430 * 21 20 19 23 23 S 1.75880 * 125.20447 * 60.01931 * 19 2 1 24 24 H 1.09003 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46367 * 299.99634 * 1 2 3 26 26 H 1.08999 * 109.47169 * 59.99380 * 1 2 3 27 27 H 1.09002 * 109.47089 * 304.99913 * 4 2 1 28 28 H 1.09001 * 109.47170 * 184.99693 * 4 2 1 29 29 H 1.00904 * 110.99696 * 56.04558 * 5 4 2 30 30 H 1.08993 * 109.47737 * 60.00169 * 6 5 4 31 31 H 1.09000 * 109.47263 * 299.99731 * 6 5 4 32 32 H 1.09002 * 109.46905 * 179.97438 * 9 7 6 33 33 H 1.09004 * 109.47446 * 299.99458 * 9 7 6 34 34 H 1.08992 * 109.47518 * 59.99913 * 9 7 6 35 35 H 1.09003 * 109.46920 * 294.99990 * 10 7 6 36 36 H 1.08995 * 109.47278 * 54.99923 * 10 7 6 37 37 H 0.97001 * 119.99765 * 179.97438 * 14 13 11 38 38 H 1.08001 * 122.54628 * 0.02562 * 20 19 2 39 39 H 1.08001 * 122.54532 * 180.19652 * 21 20 19 40 40 H 1.07991 * 125.20394 * 179.79241 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0376 -2.4457 6 6 2.1246 -0.6270 -3.6673 7 6 1.7022 0.1913 -4.8893 8 1 0.6234 0.3451 -4.8683 9 6 2.4112 1.5468 -4.8652 10 6 2.0853 -0.5621 -6.1646 11 6 1.5611 0.1834 -7.3650 12 1 1.0096 1.1023 -7.2315 13 6 1.7849 -0.3083 -8.6336 14 7 2.4561 -1.4275 -8.7960 15 14 1.1346 0.6153 -10.1213 16 1 2.1569 1.5867 -10.5865 17 1 0.8358 -0.3487 -11.2106 18 1 -0.1058 1.3421 -9.7494 19 6 2.0325 -0.7106 1.2304 20 6 2.8069 -0.1663 2.1701 21 6 3.1411 -1.0131 3.2130 22 6 2.6452 -2.2476 3.1155 23 16 1.6935 -2.3863 1.6429 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6053 -1.7197 -1.2953 28 1 3.1263 -0.7994 -1.2058 29 1 1.9881 0.9875 -2.3966 30 1 1.6902 -1.6246 -3.7299 31 1 3.2115 -0.7049 -3.6407 32 1 2.1106 2.1296 -5.7359 33 1 2.1383 2.0836 -3.9565 34 1 3.4900 1.3931 -4.8862 35 1 3.1707 -0.6380 -6.2296 36 1 1.6519 -1.5619 -6.1401 37 1 2.6131 -1.7737 -9.6885 38 1 3.1454 0.8582 2.1226 39 1 3.7595 -0.6992 4.0409 40 1 2.8036 -3.0405 3.8314 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309778312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:40 Heat of formation + Delta-G solvation = -12.507762 kcal Electronic energy + Delta-G solvation = -17532.296506 eV Core-core repulsion = 14857.803320 eV Total energy + Delta-G solvation = -2674.493186 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.37011 -38.34627 -36.51241 -34.68905 -32.97902 -29.48750 -28.88603 -27.52674 -26.10506 -24.83103 -23.73941 -21.97548 -20.62726 -20.18006 -18.55408 -17.81538 -16.83797 -16.66356 -16.47458 -15.65353 -15.52412 -15.19717 -14.44713 -14.39781 -14.22040 -13.69053 -13.51142 -13.46887 -13.32491 -13.21799 -12.98891 -12.72395 -12.66277 -12.37451 -12.22825 -12.16246 -12.01022 -11.83506 -11.48403 -11.42841 -11.06082 -10.92070 -10.52966 -9.54490 -9.38002 -9.35306 -8.16890 -6.26044 0.11539 0.75111 1.15756 1.40722 1.41880 1.52953 1.87424 2.42661 3.16587 3.17469 3.85392 3.91521 4.13405 4.26351 4.26712 4.28761 4.45585 4.48175 4.65187 4.71321 4.73374 4.76687 4.84880 4.89700 5.03851 5.04986 5.14365 5.25328 5.26766 5.37863 5.40110 5.48110 5.50342 5.56436 5.62861 5.80699 5.90051 6.04656 6.31526 6.51634 6.90232 7.42276 8.95345 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045718 B = 0.002919 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.302718 B = 9590.178797 C = 9768.294717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.012 4.012 3 H 0.098 0.902 4 C 0.068 3.932 5 N -0.682 5.682 6 C 0.077 3.923 7 C -0.074 4.074 8 H 0.058 0.942 9 C -0.126 4.126 10 C 0.032 3.968 11 C -0.528 4.528 12 H 0.062 0.938 13 C -0.004 4.004 14 N -0.937 5.937 15 Si 0.962 3.038 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.263 1.263 19 C -0.174 4.174 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.221 4.221 23 S 0.073 5.927 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.347 0.653 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.039 0.961 35 H -0.011 1.011 36 H -0.015 1.015 37 H 0.262 0.738 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 2.729 25.077 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.033 4.033 3 H 0.117 0.883 4 C -0.061 4.061 5 N -0.314 5.314 6 C -0.052 4.052 7 C -0.093 4.093 8 H 0.077 0.923 9 C -0.184 4.184 10 C -0.006 4.006 11 C -0.566 4.566 12 H 0.080 0.920 13 C -0.201 4.201 14 N -0.578 5.578 15 Si 0.786 3.214 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.187 1.187 19 C -0.292 4.292 20 C -0.178 4.178 21 C -0.171 4.171 22 C -0.356 4.356 23 S 0.336 5.664 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.166 0.834 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.007 0.993 36 H 0.003 0.997 37 H 0.070 0.930 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.438 1.158 24.265 24.335 hybrid contribution 1.674 1.086 -0.430 2.041 sum 0.236 2.243 23.835 23.942 Atomic orbital electron populations 1.21740 0.93118 1.01761 1.02437 1.19662 0.96835 0.98706 0.88056 0.88344 1.22007 0.97374 0.97493 0.89259 1.60461 1.64118 1.06136 1.00722 1.21827 0.96451 0.97493 0.89406 1.21008 0.99631 0.95634 0.93065 0.92323 1.21652 0.99098 0.96400 1.01232 1.19011 0.94547 0.94281 0.92718 1.21651 1.34304 1.08664 0.91981 0.91958 1.25972 0.95666 0.95931 1.02520 1.70106 1.42343 1.22193 1.23122 0.85495 0.79059 0.78298 0.78507 1.19815 1.21011 1.18708 1.24613 1.05456 0.97228 1.01908 1.20444 1.00356 1.02426 0.94551 1.20453 1.02814 0.93005 1.00784 1.25942 1.05389 1.02395 1.01922 1.84494 1.51910 1.10680 1.19357 0.93591 0.92039 0.91150 0.92027 0.95472 0.83356 0.92751 0.96046 0.93545 0.91203 0.94214 0.99306 0.99670 0.92966 0.82939 0.82216 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.00 71.98 0.65 -2.01 16 2 C -0.01 -0.24 2.91 -11.54 -0.03 -0.27 16 3 H 0.10 1.70 8.09 -2.39 -0.02 1.68 16 4 C 0.07 1.66 4.98 86.30 0.43 2.09 16 5 N -0.68 -18.79 5.95 -513.86 -3.06 -21.85 16 6 C 0.08 2.70 5.14 86.31 0.44 3.14 16 7 C -0.07 -3.05 2.55 -10.79 -0.03 -3.07 16 8 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 9 C -0.13 -4.53 8.77 71.98 0.63 -3.90 16 10 C 0.03 1.70 4.45 29.85 0.13 1.84 16 11 C -0.53 -30.05 8.41 25.60 0.22 -29.84 16 12 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 13 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 14 N -0.94 -57.89 13.29 21.45 0.28 -57.61 16 15 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.17 -3.41 5.09 24.59 0.13 -3.28 16 20 C -0.15 -2.52 10.01 21.22 0.21 -2.31 16 21 C -0.14 -2.14 10.18 21.22 0.22 -1.93 16 22 C -0.22 -3.51 11.23 66.72 0.75 -2.76 16 23 S 0.07 1.41 23.03 -56.49 -1.30 0.11 16 24 H 0.04 0.98 8.00 -2.39 -0.02 0.96 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.52 7.75 -2.39 -0.02 1.50 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.35 8.50 6.98 -89.69 -0.63 7.88 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 1.81 6.95 -2.39 -0.02 1.79 16 33 H 0.07 1.97 6.68 -2.38 -0.02 1.95 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 40 H 0.18 1.98 8.06 -2.92 -0.02 1.96 16 Total: -1.00 -64.42 338.58 2.53 -61.90 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.37 Total: 12.72 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.21 Total: -42.06 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.77 Total: -79.46 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.30 Total: 0.11 kcal Total: -64.42 2.53 -61.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309778312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.391 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds