Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47155 * 2 1 4 4 C 1.53004 * 109.47218 * 119.99892 * 2 1 3 5 5 C 1.50706 * 109.46858 * 295.00248 * 4 2 1 6 6 H 1.07994 * 119.99795 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99968 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00259 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99972 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47047 * 89.99774 * 9 7 5 11 11 H 1.48494 * 109.47432 * 209.99683 * 9 7 5 12 12 H 1.48502 * 109.47203 * 330.00124 * 9 7 5 13 13 C 1.53002 * 109.47435 * 239.99728 * 2 1 3 14 14 N 1.46897 * 109.46972 * 65.00227 * 13 2 1 15 15 C 1.46901 * 111.00103 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47143 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.47398 * 54.99743 * 16 15 14 18 18 C 1.52997 * 109.47060 * 294.99574 * 16 15 14 19 19 C 1.50699 * 109.47083 * 174.99689 * 16 15 14 20 20 C 1.33389 * 125.20333 * 239.99474 * 19 16 15 21 21 C 1.38430 * 114.91908 * 179.97438 * 20 19 16 22 22 C 1.33391 * 114.92170 * 0.02562 * 21 20 19 23 23 S 1.75883 * 109.59191 * 359.75290 * 22 21 20 24 24 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47307 * 300.00238 * 1 2 3 26 26 H 1.09007 * 109.46827 * 60.00350 * 1 2 3 27 27 H 1.08996 * 109.46984 * 54.99428 * 4 2 1 28 28 H 1.08998 * 109.47308 * 175.00449 * 4 2 1 29 29 H 0.96998 * 120.00162 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.46856 * 305.00041 * 13 2 1 31 31 H 1.09000 * 109.47288 * 184.99739 * 13 2 1 32 32 H 1.00905 * 111.00146 * 56.04247 * 14 13 2 33 33 H 1.08990 * 109.47350 * 59.99906 * 15 14 13 34 34 H 1.09001 * 109.46871 * 299.99769 * 15 14 13 35 35 H 1.09002 * 109.47153 * 300.00319 * 18 16 15 36 36 H 1.08998 * 109.47533 * 59.99948 * 18 16 15 37 37 H 1.08996 * 109.47853 * 180.02562 * 18 16 15 38 38 H 1.07998 * 122.53790 * 0.02562 * 20 19 16 39 39 H 1.07998 * 122.53607 * 180.02562 * 21 20 19 40 40 H 1.08002 * 125.20096 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3756 7 6 1.9922 -0.4021 3.7284 8 7 1.6447 0.2774 4.7994 9 14 2.9614 -1.9894 3.9031 10 1 4.4151 -1.6870 3.8789 11 1 2.6131 -2.6431 5.1901 12 1 2.6266 -2.9001 2.7788 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1249 -0.6272 -3.6672 16 6 1.7026 0.1909 -4.8892 17 1 2.0630 1.2142 -4.7836 18 6 0.1765 0.1961 -4.9968 19 6 2.2918 -0.4233 -6.1328 20 6 3.1252 0.1916 -6.9734 21 6 3.5374 -0.5741 -8.0505 22 6 3.0383 -1.8107 -8.0848 23 16 1.9911 -2.0627 -6.6943 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6053 -1.7197 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 1.8920 -0.0455 5.6801 30 1 1.6054 -1.7198 -1.2950 31 1 3.1263 -0.7995 -1.2055 32 1 1.9882 0.9873 -2.3966 33 1 1.6906 -1.6249 -3.7297 34 1 3.2118 -0.7051 -3.6404 35 1 -0.1838 -0.8272 -5.1024 36 1 -0.2498 0.6403 -4.0973 37 1 -0.1245 0.7785 -5.8676 38 1 3.4541 1.2095 -6.8245 39 1 4.2120 -0.1988 -8.8058 40 1 3.2482 -2.5458 -8.8476 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309778313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = 6.969232 kcal Electronic energy + Delta-G solvation = -17585.110881 eV Core-core repulsion = 14911.462281 eV Total energy + Delta-G solvation = -2673.648600 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.54715 -37.16686 -35.27313 -32.90927 -31.59363 -28.73130 -27.56374 -26.25081 -24.74909 -23.64795 -21.90836 -21.15663 -19.51171 -19.07259 -17.15080 -16.68399 -15.87310 -15.48317 -14.69793 -14.63844 -14.03730 -14.00289 -13.53341 -13.22415 -12.97844 -12.60513 -12.45443 -12.37145 -12.20671 -11.86403 -11.68724 -11.50251 -11.35139 -11.13767 -10.93596 -10.71544 -10.64661 -10.36158 -9.90309 -9.64213 -9.41754 -9.04805 -8.83417 -8.66748 -8.50004 -8.20007 -6.00479 -3.97284 0.79685 1.43568 1.82409 2.53274 3.32356 3.40025 3.43975 4.18495 4.48322 4.71613 4.74834 4.85311 5.06421 5.19193 5.32898 5.33218 5.41655 5.52839 5.60238 5.68861 5.78968 5.86539 5.89219 6.01818 6.05523 6.07667 6.24768 6.29354 6.33134 6.43409 6.60485 6.86675 7.05282 7.15536 7.24133 7.31528 7.49220 7.58987 7.84631 8.59186 9.05406 9.62568 11.12993 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.003155 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.004324 B = 8872.143214 C = 9205.912709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.684 5.684 15 C 0.065 3.935 16 C -0.020 4.020 17 H 0.087 0.913 18 C -0.137 4.137 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.133 4.133 22 C -0.225 4.225 23 S 0.103 5.897 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.016 0.984 28 H 0.007 0.993 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.338 0.662 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -2.478 -26.138 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.048 4.048 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.314 5.314 15 C -0.065 4.065 16 C -0.041 4.041 17 H 0.105 0.895 18 C -0.194 4.194 19 C -0.276 4.276 20 C -0.178 4.178 21 C -0.163 4.163 22 C -0.360 4.360 23 S 0.366 5.634 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.156 0.844 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.311 -4.001 -25.462 25.776 hybrid contribution 2.518 0.455 -0.330 2.580 sum 2.829 -3.545 -25.792 26.188 Atomic orbital electron populations 1.21591 0.95231 1.00623 1.00670 1.21003 0.96385 0.98984 0.92852 0.92229 1.19618 0.95350 0.96263 0.93519 1.21137 1.35287 1.09484 0.89094 0.90815 1.25030 0.95726 0.96888 0.95968 1.69914 1.47275 1.39308 0.98003 0.86809 0.80574 0.84585 0.77482 1.20455 1.21473 1.19066 1.22176 0.97106 0.97792 0.89606 1.60482 1.63935 1.05767 1.01228 1.22021 0.97298 0.97989 0.89218 1.19766 0.96568 0.98948 0.88833 0.89510 1.21785 0.93190 1.02006 1.02453 1.24632 1.03795 0.97259 1.01883 1.20148 1.00367 1.01723 0.95552 1.20155 1.02508 0.93848 0.99820 1.25630 1.05450 1.01449 1.03467 1.84354 1.47289 1.12495 1.19275 0.94254 0.92273 0.93672 0.96611 0.97425 0.92845 0.91550 0.95821 0.84394 0.91047 0.95301 0.92856 0.90249 0.93127 0.84442 0.84522 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.15 0.33 -2.02 16 2 C -0.07 -1.43 2.48 -90.62 -0.22 -1.65 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 9 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.06 1.00 5.07 -3.82 -0.02 0.98 16 14 N -0.68 -9.12 5.41 -113.78 -0.62 -9.73 16 15 C 0.06 0.76 4.98 -3.82 -0.02 0.74 16 16 C -0.02 -0.21 2.91 -91.77 -0.27 -0.47 16 17 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 18 C -0.14 -1.37 9.01 37.16 0.33 -1.04 16 19 C -0.16 -1.59 5.09 -36.00 -0.18 -1.77 16 20 C -0.15 -1.39 10.01 -41.21 -0.41 -1.80 16 21 C -0.13 -1.14 10.18 -41.20 -0.42 -1.56 16 22 C -0.22 -1.92 11.23 29.04 0.33 -1.59 16 23 S 0.10 0.99 23.04 -107.50 -2.48 -1.49 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 26 H 0.04 0.76 7.75 -51.92 -0.40 0.36 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.34 4.24 8.73 -39.29 -0.34 3.90 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.55 8.01 -51.93 -0.42 0.13 16 36 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -30.20 337.25 -9.85 -40.06 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.89 Total: -0.33 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -1.06 Total: -23.54 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.16 Total: -37.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.48 Total: -1.49 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.20 -9.85 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309778313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.027 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds