Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47155 * 2 1 4 4 C 1.53004 * 109.47218 * 119.99892 * 2 1 3 5 5 C 1.50706 * 109.46858 * 295.00248 * 4 2 1 6 6 H 1.07994 * 119.99795 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99968 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00259 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99972 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47047 * 89.99774 * 9 7 5 11 11 H 1.48494 * 109.47432 * 209.99683 * 9 7 5 12 12 H 1.48502 * 109.47203 * 330.00124 * 9 7 5 13 13 C 1.53002 * 109.47435 * 239.99728 * 2 1 3 14 14 N 1.46897 * 109.46972 * 65.00227 * 13 2 1 15 15 C 1.46901 * 111.00103 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47143 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.47398 * 54.99743 * 16 15 14 18 18 C 1.52997 * 109.47060 * 294.99574 * 16 15 14 19 19 C 1.50699 * 109.47083 * 174.99689 * 16 15 14 20 20 C 1.33389 * 125.20333 * 239.99474 * 19 16 15 21 21 C 1.38430 * 114.91908 * 179.97438 * 20 19 16 22 22 C 1.33391 * 114.92170 * 0.02562 * 21 20 19 23 23 S 1.75883 * 109.59191 * 359.75290 * 22 21 20 24 24 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47307 * 300.00238 * 1 2 3 26 26 H 1.09007 * 109.46827 * 60.00350 * 1 2 3 27 27 H 1.08996 * 109.46984 * 54.99428 * 4 2 1 28 28 H 1.08998 * 109.47308 * 175.00449 * 4 2 1 29 29 H 0.96998 * 120.00162 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.46856 * 305.00041 * 13 2 1 31 31 H 1.09000 * 109.47288 * 184.99739 * 13 2 1 32 32 H 1.00905 * 111.00146 * 56.04247 * 14 13 2 33 33 H 1.08990 * 109.47350 * 59.99906 * 15 14 13 34 34 H 1.09001 * 109.46871 * 299.99769 * 15 14 13 35 35 H 1.09002 * 109.47153 * 300.00319 * 18 16 15 36 36 H 1.08998 * 109.47533 * 59.99948 * 18 16 15 37 37 H 1.08996 * 109.47853 * 180.02562 * 18 16 15 38 38 H 1.07998 * 122.53790 * 0.02562 * 20 19 16 39 39 H 1.07998 * 122.53607 * 180.02562 * 21 20 19 40 40 H 1.08002 * 125.20096 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3756 7 6 1.9922 -0.4021 3.7284 8 7 1.6447 0.2774 4.7994 9 14 2.9614 -1.9894 3.9031 10 1 4.4151 -1.6870 3.8789 11 1 2.6131 -2.6431 5.1901 12 1 2.6266 -2.9001 2.7788 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1249 -0.6272 -3.6672 16 6 1.7026 0.1909 -4.8892 17 1 2.0630 1.2142 -4.7836 18 6 0.1765 0.1961 -4.9968 19 6 2.2918 -0.4233 -6.1328 20 6 3.1252 0.1916 -6.9734 21 6 3.5374 -0.5741 -8.0505 22 6 3.0383 -1.8107 -8.0848 23 16 1.9911 -2.0627 -6.6943 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6053 -1.7197 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 1.8920 -0.0455 5.6801 30 1 1.6054 -1.7198 -1.2950 31 1 3.1263 -0.7995 -1.2055 32 1 1.9882 0.9873 -2.3966 33 1 1.6906 -1.6249 -3.7297 34 1 3.2118 -0.7051 -3.6404 35 1 -0.1838 -0.8272 -5.1024 36 1 -0.2498 0.6403 -4.0973 37 1 -0.1245 0.7785 -5.8676 38 1 3.4541 1.2095 -6.8245 39 1 4.2120 -0.1988 -8.8058 40 1 3.2482 -2.5458 -8.8476 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309778313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = -9.999528 kcal Electronic energy + Delta-G solvation = -17585.846702 eV Core-core repulsion = 14911.462281 eV Total energy + Delta-G solvation = -2674.384421 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.34592 -38.31298 -36.53303 -34.64517 -33.14972 -29.64562 -29.24117 -27.44862 -25.91000 -24.68396 -23.52092 -22.01817 -20.67291 -20.18260 -18.93078 -17.81273 -16.65585 -16.60198 -16.33753 -15.76946 -15.46279 -15.24012 -14.85094 -14.44127 -14.17277 -13.77254 -13.56232 -13.46364 -13.31654 -13.09260 -13.00684 -12.82205 -12.57292 -12.30609 -12.19128 -12.06646 -11.95528 -11.76862 -11.46053 -11.40898 -11.17300 -11.01314 -10.73019 -9.54181 -9.37103 -9.30311 -8.25683 -6.27790 0.11593 0.75371 1.15361 1.35496 1.37629 1.49343 1.87230 2.37878 3.09552 3.17875 3.86710 3.92574 4.13920 4.18984 4.27106 4.33648 4.46736 4.50852 4.66536 4.71969 4.74596 4.80815 4.89822 4.92771 4.97331 5.06003 5.11562 5.17133 5.27710 5.38289 5.40365 5.43880 5.49138 5.56725 5.62588 5.72697 5.73908 6.07333 6.35481 6.51136 6.80018 7.35767 8.91100 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.003155 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.004324 B = 8872.143214 C = 9205.912709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 H 0.052 0.948 4 C -0.008 4.008 5 C -0.517 4.517 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.075 3.925 14 N -0.681 5.681 15 C 0.070 3.930 16 C -0.013 4.013 17 H 0.095 0.905 18 C -0.132 4.132 19 C -0.174 4.174 20 C -0.150 4.150 21 C -0.141 4.141 22 C -0.222 4.222 23 S 0.078 5.922 24 H 0.041 0.959 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.017 0.983 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.345 0.655 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.964 -3.566 -28.432 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.046 4.046 5 C -0.556 4.556 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.172 1.172 13 C -0.054 4.054 14 N -0.313 5.313 15 C -0.059 4.059 16 C -0.034 4.034 17 H 0.114 0.886 18 C -0.190 4.190 19 C -0.291 4.291 20 C -0.180 4.180 21 C -0.172 4.172 22 C -0.357 4.357 23 S 0.341 5.659 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.163 0.837 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.485 -5.082 -27.784 28.284 hybrid contribution 2.115 0.884 0.326 2.316 sum 3.601 -4.198 -27.458 28.010 Atomic orbital electron populations 1.21492 0.94978 1.00583 1.00187 1.20876 0.96529 0.98505 0.92869 0.92938 1.19579 0.95653 0.95914 0.93425 1.21460 1.34270 1.08625 0.91204 0.94598 1.25995 0.97090 1.00870 0.95568 1.70071 1.49177 1.41596 0.98708 0.85703 0.79182 0.80032 0.77986 1.19327 1.21185 1.17157 1.21887 0.96993 0.97463 0.89050 1.60400 1.64051 1.05971 1.00835 1.21984 0.97064 0.97884 0.88984 1.19666 0.96474 0.99047 0.88181 0.88645 1.21731 0.93222 1.01694 1.02343 1.24631 1.04775 0.97457 1.02270 1.20434 0.99689 1.02412 0.95444 1.20444 1.02802 0.93788 1.00123 1.25941 1.04583 1.02016 1.03179 1.84427 1.48179 1.12873 1.20432 0.94020 0.95472 0.91332 0.96507 0.96832 0.92693 0.91496 0.95600 0.83667 0.91635 0.95449 0.93410 0.91084 0.92368 0.83167 0.82375 0.80097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.89 71.98 0.64 -3.69 16 2 C -0.07 -2.63 2.48 -10.79 -0.03 -2.66 16 3 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.01 -0.37 3.52 29.85 0.10 -0.26 16 5 C -0.52 -29.91 8.96 25.60 0.23 -29.68 16 6 H 0.04 2.28 7.30 -2.91 -0.02 2.26 16 7 C 0.00 0.05 5.47 84.65 0.46 0.51 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 13 C 0.08 2.29 5.07 86.30 0.44 2.73 16 14 N -0.68 -16.88 5.41 -513.90 -2.78 -19.65 16 15 C 0.07 1.52 4.98 86.30 0.43 1.95 16 16 C -0.01 -0.24 2.91 -11.54 -0.03 -0.27 16 17 H 0.10 1.58 8.09 -2.39 -0.02 1.56 16 18 C -0.13 -2.46 9.01 71.98 0.65 -1.81 16 19 C -0.17 -3.18 5.09 24.59 0.13 -3.05 16 20 C -0.15 -2.46 10.01 21.22 0.21 -2.25 16 21 C -0.14 -2.07 10.18 21.22 0.22 -1.85 16 22 C -0.22 -3.30 11.23 66.72 0.75 -2.55 16 23 S 0.08 1.39 23.04 -56.49 -1.30 0.09 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.03 1.16 6.95 -2.39 -0.02 1.14 16 26 H 0.07 2.23 7.75 -2.38 -0.02 2.21 16 27 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 28 H 0.01 0.61 7.57 -2.39 -0.02 0.60 16 29 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.35 7.96 8.73 -89.69 -0.78 7.17 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.93 8.01 -2.39 -0.02 0.91 16 36 H 0.07 1.43 7.75 -2.39 -0.02 1.41 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -65.25 337.25 2.45 -62.80 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.16 Total: 13.17 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 4.20 Total: -42.87 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.48 Total: -80.02 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.30 Total: 0.09 kcal Total: -65.25 2.45 -62.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309778313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.798 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds