Wall clock time and date at job start Mon Mar 30 2020 07:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48491 * 109.47307 * 270.00121 * 3 2 1 5 5 H 1.48509 * 109.46884 * 30.00364 * 3 2 1 6 6 H 1.48501 * 109.47244 * 149.99661 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00274 * 159.66790 * 7 2 1 9 9 N 1.36940 * 120.00053 * 339.65635 * 7 2 1 10 10 C 1.46500 * 120.00390 * 321.44911 * 9 7 2 11 11 C 1.52999 * 109.47257 * 270.00012 * 10 9 7 12 12 H 1.09002 * 109.46945 * 304.99735 * 11 10 9 13 13 C 1.53001 * 109.47267 * 64.99662 * 11 10 9 14 14 C 1.52999 * 109.47267 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47325 * 300.00257 * 14 13 11 16 16 C 1.53001 * 109.47158 * 59.99676 * 15 14 13 17 17 H 1.08995 * 109.47091 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.47051 * 60.00028 * 16 15 14 19 19 C 1.52996 * 109.47325 * 184.99919 * 11 10 9 20 20 C 1.46505 * 119.99531 * 141.44746 * 9 7 2 21 21 C 1.54961 * 110.92334 * 310.62676 * 20 9 7 22 22 C 1.54268 * 104.15789 * 156.29825 * 21 20 9 23 23 C 1.53883 * 106.64117 * 336.44389 * 22 21 20 24 24 C 1.54266 * 106.59634 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46682 * 29.99948 * 10 9 7 27 27 H 1.08997 * 109.47001 * 149.99518 * 10 9 7 28 28 H 1.09004 * 109.47291 * 300.00369 * 13 11 10 29 29 H 1.09002 * 109.47078 * 60.00155 * 13 11 10 30 30 H 1.09002 * 109.46945 * 60.00073 * 14 13 11 31 31 H 1.08997 * 109.47117 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.47210 * 179.97438 * 15 14 13 33 33 H 1.09002 * 109.46959 * 299.99808 * 15 14 13 34 34 H 0.96703 * 113.99944 * 60.00537 * 18 16 15 35 35 H 1.09002 * 109.46959 * 299.99808 * 19 11 10 36 36 H 1.08998 * 109.47292 * 59.99451 * 19 11 10 37 37 H 1.09006 * 110.66938 * 187.31982 * 20 9 7 38 38 H 1.08996 * 110.47562 * 37.64591 * 21 20 9 39 39 H 1.08997 * 110.52848 * 274.97685 * 21 20 9 40 40 H 1.09004 * 110.03383 * 217.13898 * 22 21 20 41 41 H 1.08997 * 110.03221 * 95.75261 * 22 21 20 42 42 H 1.09002 * 110.03156 * 119.25836 * 23 22 21 43 43 H 1.08994 * 110.03309 * 240.64462 * 23 22 21 44 44 H 1.09003 * 110.48832 * 142.28994 * 24 23 22 45 45 H 1.09001 * 110.48680 * 264.79811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0397 -1.2313 -0.3255 9 7 1.3895 -2.3513 0.4112 10 6 0.4630 -2.3174 1.5456 11 6 1.2344 -2.5735 2.8419 12 1 1.7847 -3.5106 2.7581 13 6 2.2160 -1.4257 3.0865 14 6 2.9869 -1.6815 4.3831 15 6 2.0038 -1.7696 5.5521 16 6 1.0221 -2.9174 5.3075 17 1 0.3215 -2.9798 6.1400 18 8 1.7436 -4.1460 5.1981 19 6 0.2516 -2.6620 4.0112 20 6 1.6519 -3.6146 -0.2828 21 6 1.5086 -3.4437 -1.8162 22 6 2.3677 -4.5819 -2.4046 23 6 3.4011 -4.9560 -1.3275 24 6 3.1349 -4.0316 -0.1215 25 1 -0.4849 0.8401 0.0004 26 1 -0.0155 -1.3392 1.5947 27 1 -0.2973 -3.0877 1.4169 28 1 2.9162 -1.3626 2.2535 29 1 1.6657 -0.4885 3.1703 30 1 3.5372 -2.6187 4.2998 31 1 3.6859 -0.8635 4.5576 32 1 2.5530 -1.9522 6.4757 33 1 1.4535 -0.8324 5.6354 34 1 2.2565 -4.3724 5.9860 35 1 -0.2987 -1.7248 4.0950 36 1 -0.4477 -3.4796 3.8369 37 1 0.9882 -4.3988 0.0816 38 1 1.8944 -2.4736 -2.1295 39 1 0.4673 -3.5567 -2.1178 40 1 2.8756 -4.2388 -3.3060 41 1 1.7400 -5.4428 -2.6348 42 1 3.2742 -5.9982 -1.0344 43 1 4.4103 -4.7952 -1.7065 44 1 3.2794 -4.5730 0.8134 45 1 3.7854 -3.1578 -0.1597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310100119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:23 Heat of formation + Delta-G solvation = -65.148409 kcal Electronic energy + Delta-G solvation = -22390.713236 eV Core-core repulsion = 19407.017604 eV Total energy + Delta-G solvation = -2983.695632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.85051 -37.49308 -35.27927 -33.71550 -31.34478 -30.28196 -29.15508 -27.77229 -26.46213 -25.43252 -22.53952 -21.84652 -20.33537 -19.45645 -19.30338 -18.97050 -16.46124 -16.21033 -15.42273 -15.08701 -14.65159 -14.28410 -14.13265 -13.78747 -13.11418 -12.97547 -12.65513 -12.45237 -12.27634 -11.90327 -11.74223 -11.33444 -11.18438 -10.87929 -10.78234 -10.67686 -10.64148 -10.48021 -10.28583 -10.23970 -10.15854 -9.96823 -9.85726 -9.68058 -9.50249 -9.33472 -9.17647 -9.10372 -8.32474 -6.37677 -5.67564 -3.25491 3.37829 3.46212 3.49143 4.53411 4.56069 5.13120 5.15370 5.25962 5.37119 5.41595 5.48604 5.57029 5.72217 5.84563 5.88237 5.95374 6.02628 6.19565 6.23899 6.26308 6.28888 6.30544 6.32567 6.48470 6.51765 6.56846 6.62883 6.67079 6.71895 6.74366 6.82485 6.91572 7.09971 7.13198 7.20488 7.26167 7.31541 7.43684 7.50895 7.86223 7.90484 7.93839 8.64263 9.31953 9.94962 10.54752 11.30557 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.008747 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.552298 B = 3200.304547 C = 4493.065572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.015 3.985 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.057 0.943 9 N -0.573 5.573 10 C 0.151 3.849 11 C -0.093 4.093 12 H 0.059 0.941 13 C -0.099 4.099 14 C -0.116 4.116 15 C -0.149 4.149 16 C 0.108 3.892 17 H 0.042 0.958 18 O -0.559 6.559 19 C -0.107 4.107 20 C 0.173 3.827 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.136 4.136 25 H 0.252 0.748 26 H 0.092 0.908 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.366 0.634 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -6.239 7.308 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.185 4.185 3 Si 0.713 3.287 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.074 0.926 9 N -0.291 5.291 10 C 0.025 3.975 11 C -0.114 4.114 12 H 0.078 0.922 13 C -0.136 4.136 14 C -0.154 4.154 15 C -0.186 4.186 16 C 0.049 3.951 17 H 0.060 0.940 18 O -0.364 6.364 19 C -0.145 4.145 20 C 0.065 3.935 21 C -0.166 4.166 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.175 4.175 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.036 0.964 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.211 0.789 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.648 -6.076 6.698 9.423 hybrid contribution 0.695 0.992 0.651 1.375 sum 3.342 -5.084 7.350 9.541 Atomic orbital electron populations 1.69997 1.05438 1.25289 1.52212 1.25103 0.94834 0.98213 1.00305 0.86604 0.79761 0.84562 0.77742 1.21500 1.21675 1.20289 1.18755 0.93361 0.85133 1.39817 0.92568 1.43745 1.51427 1.03228 1.30725 1.20987 0.90468 1.01916 0.84161 1.21640 0.96240 0.98260 0.95215 0.92227 1.21448 0.98632 0.97657 0.95872 1.21518 0.97428 1.00764 0.95653 1.22224 0.98608 0.99405 0.98409 1.21796 0.92060 0.83332 0.97903 0.94029 1.86603 1.66404 1.40487 1.42870 1.21572 0.97967 1.01050 0.93884 1.21347 0.92589 0.88779 0.90757 1.22653 0.97954 0.98258 0.97733 1.22090 0.97597 0.98724 0.97719 1.22054 0.98219 0.98834 0.96772 1.22787 1.00747 0.98373 0.95642 0.93831 0.89037 0.96398 0.89810 0.93382 0.92198 0.93374 0.93037 0.91516 0.78881 0.91224 0.92326 0.93250 0.90319 0.93338 0.93117 0.93239 0.93159 0.93166 0.93367 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.73 11.47 55.49 0.64 -24.09 16 2 C 0.02 0.41 4.97 -17.43 -0.09 0.32 16 3 Si 0.88 21.16 29.60 -169.99 -5.03 16.12 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.24 -6.16 5.62 -15.06 -0.08 -6.25 16 8 H 0.06 1.48 6.96 -52.49 -0.37 1.11 16 9 N -0.57 -13.57 2.36 -163.35 -0.38 -13.96 16 10 C 0.15 3.45 4.80 -4.04 -0.02 3.43 16 11 C -0.09 -1.83 2.25 -90.62 -0.20 -2.03 16 12 H 0.06 1.26 7.68 -51.93 -0.40 0.86 16 13 C -0.10 -1.95 4.76 -26.73 -0.13 -2.08 16 14 C -0.12 -1.89 5.78 -26.73 -0.15 -2.04 16 15 C -0.15 -2.06 5.64 -26.73 -0.15 -2.21 16 16 C 0.11 1.55 3.77 -26.76 -0.10 1.45 16 17 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 18 O -0.56 -8.11 11.97 -35.23 -0.42 -8.53 16 19 C -0.11 -1.81 4.94 -26.76 -0.13 -1.94 16 20 C 0.17 3.66 3.43 -65.89 -0.23 3.44 16 21 C -0.13 -2.59 6.32 -25.03 -0.16 -2.75 16 22 C -0.12 -2.06 6.80 -25.61 -0.17 -2.24 16 23 C -0.12 -1.97 6.80 -25.61 -0.17 -2.14 16 24 C -0.14 -2.59 6.41 -25.07 -0.16 -2.75 16 25 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.09 2.36 5.55 -51.93 -0.29 2.07 16 27 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 28 H 0.08 1.88 6.35 -51.93 -0.33 1.55 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.37 3.64 9.08 45.56 0.41 4.05 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 38 H 0.08 1.81 6.99 -51.93 -0.36 1.45 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.07 1.40 6.85 -51.93 -0.36 1.04 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -27.61 336.05 -9.62 -37.24 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.53 Total: 5.95 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -1.95 Total: -17.79 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.25 Total: -38.05 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.42 Total: -8.53 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.61 -9.62 -37.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310100119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.913 kcal (2) G-P(sol) polarization free energy of solvation -27.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds