Wall clock time and date at job start Mon Mar 30 2020 07:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48491 * 109.47307 * 270.00121 * 3 2 1 5 5 H 1.48509 * 109.46884 * 30.00364 * 3 2 1 6 6 H 1.48501 * 109.47244 * 149.99661 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00274 * 159.66790 * 7 2 1 9 9 N 1.36940 * 120.00053 * 339.65635 * 7 2 1 10 10 C 1.46500 * 120.00390 * 321.44911 * 9 7 2 11 11 C 1.52999 * 109.47257 * 270.00012 * 10 9 7 12 12 H 1.09002 * 109.46945 * 304.99735 * 11 10 9 13 13 C 1.53001 * 109.47267 * 64.99662 * 11 10 9 14 14 C 1.52999 * 109.47267 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47325 * 300.00257 * 14 13 11 16 16 C 1.53001 * 109.47158 * 59.99676 * 15 14 13 17 17 H 1.08995 * 109.47091 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.47051 * 60.00028 * 16 15 14 19 19 C 1.52996 * 109.47325 * 184.99919 * 11 10 9 20 20 C 1.46505 * 119.99531 * 141.44746 * 9 7 2 21 21 C 1.54961 * 110.92334 * 310.62676 * 20 9 7 22 22 C 1.54268 * 104.15789 * 156.29825 * 21 20 9 23 23 C 1.53883 * 106.64117 * 336.44389 * 22 21 20 24 24 C 1.54266 * 106.59634 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46682 * 29.99948 * 10 9 7 27 27 H 1.08997 * 109.47001 * 149.99518 * 10 9 7 28 28 H 1.09004 * 109.47291 * 300.00369 * 13 11 10 29 29 H 1.09002 * 109.47078 * 60.00155 * 13 11 10 30 30 H 1.09002 * 109.46945 * 60.00073 * 14 13 11 31 31 H 1.08997 * 109.47117 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.47210 * 179.97438 * 15 14 13 33 33 H 1.09002 * 109.46959 * 299.99808 * 15 14 13 34 34 H 0.96703 * 113.99944 * 60.00537 * 18 16 15 35 35 H 1.09002 * 109.46959 * 299.99808 * 19 11 10 36 36 H 1.08998 * 109.47292 * 59.99451 * 19 11 10 37 37 H 1.09006 * 110.66938 * 187.31982 * 20 9 7 38 38 H 1.08996 * 110.47562 * 37.64591 * 21 20 9 39 39 H 1.08997 * 110.52848 * 274.97685 * 21 20 9 40 40 H 1.09004 * 110.03383 * 217.13898 * 22 21 20 41 41 H 1.08997 * 110.03221 * 95.75261 * 22 21 20 42 42 H 1.09002 * 110.03156 * 119.25836 * 23 22 21 43 43 H 1.08994 * 110.03309 * 240.64462 * 23 22 21 44 44 H 1.09003 * 110.48832 * 142.28994 * 24 23 22 45 45 H 1.09001 * 110.48680 * 264.79811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0397 -1.2313 -0.3255 9 7 1.3895 -2.3513 0.4112 10 6 0.4630 -2.3174 1.5456 11 6 1.2344 -2.5735 2.8419 12 1 1.7847 -3.5106 2.7581 13 6 2.2160 -1.4257 3.0865 14 6 2.9869 -1.6815 4.3831 15 6 2.0038 -1.7696 5.5521 16 6 1.0221 -2.9174 5.3075 17 1 0.3215 -2.9798 6.1400 18 8 1.7436 -4.1460 5.1981 19 6 0.2516 -2.6620 4.0112 20 6 1.6519 -3.6146 -0.2828 21 6 1.5086 -3.4437 -1.8162 22 6 2.3677 -4.5819 -2.4046 23 6 3.4011 -4.9560 -1.3275 24 6 3.1349 -4.0316 -0.1215 25 1 -0.4849 0.8401 0.0004 26 1 -0.0155 -1.3392 1.5947 27 1 -0.2973 -3.0877 1.4169 28 1 2.9162 -1.3626 2.2535 29 1 1.6657 -0.4885 3.1703 30 1 3.5372 -2.6187 4.2998 31 1 3.6859 -0.8635 4.5576 32 1 2.5530 -1.9522 6.4757 33 1 1.4535 -0.8324 5.6354 34 1 2.2565 -4.3724 5.9860 35 1 -0.2987 -1.7248 4.0950 36 1 -0.4477 -3.4796 3.8369 37 1 0.9882 -4.3988 0.0816 38 1 1.8944 -2.4736 -2.1295 39 1 0.4673 -3.5567 -2.1178 40 1 2.8756 -4.2388 -3.3060 41 1 1.7400 -5.4428 -2.6348 42 1 3.2742 -5.9982 -1.0344 43 1 4.4103 -4.7952 -1.7065 44 1 3.2794 -4.5730 0.8134 45 1 3.7854 -3.1578 -0.1597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310100119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:22 Heat of formation + Delta-G solvation = -80.486817 kcal Electronic energy + Delta-G solvation = -22391.378359 eV Core-core repulsion = 19407.017604 eV Total energy + Delta-G solvation = -2984.360755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23629 -39.05683 -36.74400 -35.27363 -33.15232 -31.85612 -30.50185 -29.32276 -28.09935 -27.27895 -24.24319 -23.20976 -21.82440 -21.07741 -20.88179 -20.43037 -18.12552 -17.60760 -17.10206 -16.51878 -16.28655 -15.95519 -15.60063 -15.23559 -14.68346 -14.47741 -14.34764 -14.03122 -13.70640 -13.30559 -13.16098 -13.07196 -12.86609 -12.66828 -12.42604 -12.33461 -12.19025 -11.96506 -11.89376 -11.76501 -11.72711 -11.62823 -11.42817 -11.16227 -11.12202 -11.06342 -10.71099 -10.45062 -10.31348 -8.36275 -7.69398 -5.30927 1.42311 1.46633 1.53895 2.54646 3.33350 3.51249 3.64281 3.94811 3.96428 4.04235 4.06020 4.12219 4.30586 4.40097 4.54661 4.65070 4.66174 4.72646 4.75941 4.77694 4.83565 4.94470 4.95827 5.00437 5.04803 5.08330 5.18032 5.20342 5.23006 5.25788 5.30447 5.34214 5.47552 5.57693 5.59127 5.61477 5.68747 5.70024 5.80318 5.86248 6.02108 6.59393 7.05564 7.30307 8.00854 8.54835 9.24500 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.008747 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.552298 B = 3200.304547 C = 4493.065572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.028 4.028 3 Si 0.932 3.068 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.225 4.225 8 H 0.047 0.953 9 N -0.586 5.586 10 C 0.153 3.847 11 C -0.077 4.077 12 H 0.047 0.953 13 C -0.092 4.092 14 C -0.110 4.110 15 C -0.143 4.143 16 C 0.114 3.886 17 H 0.071 0.929 18 O -0.578 6.578 19 C -0.108 4.108 20 C 0.163 3.837 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.127 4.127 25 H 0.246 0.754 26 H 0.062 0.938 27 H 0.010 0.990 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.388 0.612 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -7.713 8.722 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.225 4.225 3 Si 0.762 3.238 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.356 4.356 8 H 0.064 0.936 9 N -0.304 5.304 10 C 0.027 3.973 11 C -0.098 4.098 12 H 0.066 0.934 13 C -0.129 4.129 14 C -0.148 4.148 15 C -0.181 4.181 16 C 0.055 3.945 17 H 0.088 0.912 18 O -0.385 6.385 19 C -0.147 4.147 20 C 0.056 3.944 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.166 4.166 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.902 -7.574 8.126 11.774 hybrid contribution 0.308 1.382 0.182 1.428 sum 4.210 -6.192 8.309 11.185 Atomic orbital electron populations 1.70114 1.06517 1.25305 1.54314 1.25582 0.95319 1.00429 1.01167 0.85822 0.78873 0.81738 0.77393 1.21645 1.22019 1.19737 1.18750 0.92792 0.85951 1.38131 0.93587 1.43921 1.51310 1.03694 1.31525 1.20915 0.90651 0.99934 0.85814 1.21359 0.96275 0.97390 0.94734 0.93414 1.21294 0.97972 0.96671 0.97011 1.21437 0.97741 1.01002 0.94617 1.22200 0.98096 0.99305 0.98506 1.21694 0.92468 0.83607 0.96722 0.91161 1.86549 1.66904 1.40288 1.44779 1.21553 0.97629 1.00997 0.94475 1.21552 0.94182 0.87675 0.91023 1.22558 0.98017 0.98359 0.97497 1.22037 0.97376 0.97743 0.98065 1.22024 0.98841 0.99245 0.94965 1.22629 0.98296 0.98229 0.97472 0.94416 0.91961 0.97153 0.93142 0.95435 0.92173 0.92585 0.89614 0.91508 0.76337 0.91500 0.92442 0.93090 0.93530 0.94437 0.91911 0.91111 0.90829 0.91616 0.92984 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.31 11.47 21.65 0.25 -53.06 16 2 C -0.03 -1.55 4.97 84.86 0.42 -1.13 16 3 Si 0.93 44.75 29.60 68.60 2.03 46.78 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.23 -11.98 5.62 84.03 0.47 -11.51 16 8 H 0.05 2.52 6.96 -2.91 -0.02 2.50 16 9 N -0.59 -28.75 2.36 -670.73 -1.58 -30.33 16 10 C 0.15 7.28 4.80 86.38 0.41 7.69 16 11 C -0.08 -3.07 2.25 -10.80 -0.02 -3.10 16 12 H 0.05 2.02 7.68 -2.39 -0.02 2.00 16 13 C -0.09 -3.69 4.76 30.59 0.15 -3.54 16 14 C -0.11 -3.42 5.78 30.59 0.18 -3.24 16 15 C -0.14 -3.53 5.64 30.59 0.17 -3.36 16 16 C 0.11 2.94 3.77 30.58 0.12 3.05 16 17 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 18 O -0.58 -15.00 11.97 -148.98 -1.78 -16.78 16 19 C -0.11 -3.60 4.94 30.58 0.15 -3.45 16 20 C 0.16 6.97 3.43 46.31 0.16 7.13 16 21 C -0.12 -5.16 6.32 31.69 0.20 -4.96 16 22 C -0.11 -3.59 6.80 31.32 0.21 -3.37 16 23 C -0.11 -3.38 6.80 31.32 0.21 -3.16 16 24 C -0.13 -4.74 6.41 31.67 0.20 -4.54 16 25 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 26 H 0.06 3.38 5.55 -2.39 -0.01 3.37 16 27 H 0.01 0.48 7.90 -2.39 -0.02 0.46 16 28 H 0.05 2.33 6.35 -2.39 -0.02 2.31 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.87 7.68 -2.39 -0.02 1.85 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.39 6.21 9.08 -74.05 -0.67 5.53 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 2.15 7.84 -2.38 -0.02 2.13 16 38 H 0.05 2.20 6.99 -2.39 -0.02 2.19 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.04 1.89 6.85 -2.39 -0.02 1.88 16 Total: -1.00 -61.81 336.05 2.22 -59.59 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.27 Total: 21.30 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 3.03 Total: -27.49 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -1.33 Total: -83.40 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.78 Total: -16.78 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -61.81 2.22 -59.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310100119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.897 kcal (2) G-P(sol) polarization free energy of solvation -61.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds