Wall clock time and date at job start Mon Mar 30 2020 07:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99935 * 2 1 4 4 H 1.48498 * 109.47325 * 270.00277 * 3 2 1 5 5 H 1.48501 * 109.47077 * 30.00424 * 3 2 1 6 6 H 1.48505 * 109.46841 * 150.00235 * 3 2 1 7 7 C 1.38814 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99744 * 200.73891 * 7 2 1 9 9 N 1.36933 * 119.99836 * 20.73339 * 7 2 1 10 10 C 1.46500 * 120.00436 * 37.64224 * 9 7 2 11 11 C 1.53002 * 109.46900 * 89.99592 * 10 9 7 12 12 H 1.08999 * 109.47037 * 55.00320 * 11 10 9 13 13 C 1.52996 * 109.47313 * 295.00229 * 11 10 9 14 14 C 1.53002 * 109.47313 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46961 * 60.00164 * 14 13 11 16 16 C 1.52996 * 109.46974 * 300.00044 * 15 14 13 17 17 H 1.08999 * 109.47143 * 300.00146 * 16 15 14 18 18 O 1.42897 * 109.47261 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.47313 * 60.00172 * 16 15 14 20 20 C 1.46500 * 119.99751 * 217.64007 * 9 7 2 21 21 C 1.54267 * 110.03415 * 55.55352 * 20 9 7 22 22 C 1.54894 * 104.19512 * 217.10578 * 21 20 9 23 23 C 1.54882 * 102.74877 * 37.94001 * 22 21 20 24 24 C 1.53873 * 110.03386 * 298.38475 * 20 9 7 25 25 H 0.97001 * 120.00035 * 354.93042 * 1 2 3 26 26 H 1.08993 * 109.47022 * 209.99642 * 10 9 7 27 27 H 1.09001 * 109.46934 * 330.00309 * 10 9 7 28 28 H 1.08999 * 109.47143 * 300.00026 * 13 11 10 29 29 H 1.09004 * 109.47194 * 59.99909 * 13 11 10 30 30 H 1.08999 * 109.47037 * 300.00091 * 14 13 11 31 31 H 1.08999 * 109.47012 * 179.97438 * 14 13 11 32 32 H 1.08993 * 109.46858 * 180.02562 * 15 14 13 33 33 H 1.09005 * 109.47165 * 59.99713 * 15 14 13 34 34 H 0.96705 * 113.99768 * 60.00464 * 18 16 15 35 35 H 1.08996 * 109.47718 * 180.02562 * 19 16 15 36 36 H 1.08996 * 109.47241 * 59.99417 * 19 16 15 37 37 H 1.09004 * 110.01854 * 176.99392 * 20 9 7 38 38 H 1.09004 * 110.48459 * 335.78054 * 21 20 9 39 39 H 1.09000 * 110.48939 * 98.42659 * 21 20 9 40 40 H 1.08994 * 110.75445 * 279.62447 * 22 21 20 41 41 H 1.09004 * 110.75431 * 156.25905 * 22 21 20 42 42 H 1.09003 * 110.48492 * 203.37547 * 23 22 21 43 43 H 1.09004 * 110.59871 * 80.79140 * 23 22 21 44 44 H 1.09003 * 110.03761 * 238.56855 * 24 20 9 45 45 H 1.09000 * 110.03367 * 359.95186 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0379 -1.2326 0.3307 9 7 1.3921 -2.3494 -0.4209 10 6 0.4571 -2.3071 -1.5479 11 6 1.2201 -2.5444 -2.8527 12 1 1.7756 -3.4797 -2.7838 13 6 2.1943 -1.3891 -3.0913 14 6 2.9578 -1.6267 -4.3957 15 6 1.9671 -1.7070 -5.5590 16 6 0.9930 -2.8624 -5.3205 17 1 1.5485 -3.7976 -5.2511 18 8 0.0674 -2.9371 -6.4066 19 6 0.2295 -2.6247 -4.0160 20 6 1.6658 -3.6193 0.2565 21 6 1.3784 -3.4856 1.7662 22 6 2.4838 -4.3361 2.4400 23 6 3.7226 -4.0491 1.5559 24 6 3.1562 -3.9776 0.1227 25 1 -0.4850 0.8368 0.0742 26 1 -0.2984 -3.0827 -1.4226 27 1 -0.0265 -1.3308 -1.5823 28 1 1.6388 -0.4538 -3.1602 29 1 2.9003 -1.3321 -2.2627 30 1 3.5133 -2.5620 -4.3263 31 1 3.6514 -0.8034 -4.5659 32 1 2.5110 -1.8768 -6.4882 33 1 1.4115 -0.7718 -5.6284 34 1 0.4822 -3.0867 -7.2673 35 1 -0.4642 -3.4480 -3.8458 36 1 -0.3260 -1.6895 -4.0853 37 1 1.0515 -4.4110 -0.1725 38 1 1.4551 -2.4440 2.0784 39 1 0.3922 -3.8844 2.0037 40 1 2.2268 -5.3950 2.4129 41 1 2.6552 -4.0053 3.4644 42 1 4.4472 -4.8591 1.6398 43 1 4.1799 -3.0992 1.8331 44 1 3.2654 -4.9435 -0.3705 45 1 3.6758 -3.2071 -0.4469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310100121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:25 Heat of formation + Delta-G solvation = -80.522937 kcal Electronic energy + Delta-G solvation = -22262.152308 eV Core-core repulsion = 19277.789986 eV Total energy + Delta-G solvation = -2984.362322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20146 -39.08057 -36.95662 -35.47601 -33.17940 -31.85125 -30.24620 -29.28868 -28.13487 -27.24818 -24.20083 -23.14265 -21.94129 -21.29423 -20.73278 -20.54135 -18.17044 -17.89835 -17.06355 -16.36959 -16.16259 -15.93622 -15.41421 -15.37581 -14.91745 -14.55953 -14.43142 -14.06566 -13.82349 -13.31804 -13.29732 -13.04444 -12.81536 -12.63527 -12.36519 -12.24958 -12.03422 -11.94742 -11.79858 -11.74362 -11.69132 -11.58612 -11.36249 -11.28807 -11.21230 -11.07918 -10.91837 -10.60395 -10.35072 -8.33973 -7.72177 -5.28081 1.42822 1.47485 1.51981 2.53957 3.24062 3.38910 3.76713 3.83267 3.91225 4.03987 4.06855 4.20794 4.30761 4.35363 4.41897 4.63004 4.66326 4.69587 4.72968 4.74470 4.81864 4.97319 4.98200 4.99107 5.04600 5.08524 5.12930 5.23626 5.24827 5.26987 5.28852 5.35720 5.39074 5.52725 5.55946 5.61961 5.68901 5.74513 5.82719 5.85436 6.00339 6.61424 6.96059 7.30292 8.02412 8.54698 9.25661 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.007695 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.065854 B = 3637.852364 C = 4633.198949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.029 4.029 3 Si 0.931 3.069 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.222 4.222 8 H 0.052 0.948 9 N -0.586 5.586 10 C 0.153 3.847 11 C -0.080 4.080 12 H 0.060 0.940 13 C -0.095 4.095 14 C -0.112 4.112 15 C -0.141 4.141 16 C 0.114 3.886 17 H 0.067 0.933 18 O -0.586 6.586 19 C -0.102 4.102 20 C 0.161 3.839 21 C -0.129 4.129 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.125 4.125 25 H 0.246 0.754 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.393 0.607 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -8.632 -7.314 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.226 4.226 3 Si 0.761 3.239 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.352 4.352 8 H 0.070 0.930 9 N -0.306 5.306 10 C 0.027 3.973 11 C -0.101 4.101 12 H 0.078 0.922 13 C -0.133 4.133 14 C -0.150 4.150 15 C -0.179 4.179 16 C 0.055 3.945 17 H 0.084 0.916 18 O -0.394 6.394 19 C -0.141 4.141 20 C 0.054 3.946 21 C -0.169 4.169 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.165 4.165 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.242 0.758 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.747 -8.395 -6.887 12.285 hybrid contribution 0.263 1.426 -0.116 1.454 sum 6.010 -6.970 -7.003 11.564 Atomic orbital electron populations 1.70015 1.06589 1.25430 1.54656 1.25588 0.95299 1.00380 1.01295 0.85822 0.78784 0.81809 0.77494 1.21444 1.22852 1.19539 1.18805 0.93312 0.85578 1.37541 0.93027 1.44064 1.50843 1.03453 1.32198 1.20863 0.90653 1.00252 0.85580 1.21467 0.96118 0.97977 0.94547 0.92165 1.21350 0.98067 0.96616 0.97258 1.21503 0.97496 1.02030 0.93935 1.22192 0.97549 0.98926 0.99243 1.21723 0.89275 0.97312 0.86181 0.91553 1.86493 1.37795 1.95850 1.19303 1.21442 0.98176 1.00925 0.93523 1.21264 0.94427 0.87579 0.91330 1.22677 0.97377 0.99438 0.97361 1.22387 0.94878 0.99571 0.98208 1.22226 0.97296 1.00654 0.94914 1.22503 0.96864 1.00179 0.96930 0.94461 0.96777 0.92090 0.95957 0.92109 0.91014 0.91875 0.89426 0.93108 0.75785 0.92304 0.93941 0.93089 0.93631 0.94036 0.90485 0.91959 0.90423 0.93563 0.91624 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.46 11.43 21.65 0.25 -53.21 16 2 C -0.03 -1.57 4.97 84.86 0.42 -1.15 16 3 Si 0.93 44.47 29.61 68.60 2.03 46.50 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.22 -11.38 5.49 84.03 0.46 -10.92 16 8 H 0.05 2.71 7.36 -2.91 -0.02 2.69 16 9 N -0.59 -27.44 2.23 -674.01 -1.51 -28.95 16 10 C 0.15 7.07 4.78 86.38 0.41 7.48 16 11 C -0.08 -3.04 2.39 -10.79 -0.03 -3.07 16 12 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 13 C -0.10 -3.67 4.76 30.59 0.15 -3.53 16 14 C -0.11 -3.25 5.92 30.60 0.18 -3.07 16 15 C -0.14 -3.64 5.55 30.60 0.17 -3.47 16 16 C 0.11 3.10 3.47 30.59 0.11 3.21 16 17 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 18 O -0.59 -15.18 13.32 -148.98 -1.98 -17.16 16 19 C -0.10 -3.53 4.85 30.60 0.15 -3.39 16 20 C 0.16 6.44 3.43 45.72 0.16 6.60 16 21 C -0.13 -5.11 6.40 31.67 0.20 -4.91 16 22 C -0.11 -3.42 6.91 31.88 0.22 -3.20 16 23 C -0.11 -3.44 6.83 31.67 0.22 -3.23 16 24 C -0.13 -4.29 6.19 31.32 0.19 -4.10 16 25 H 0.25 14.11 8.32 -92.71 -0.77 13.34 16 26 H 0.01 0.64 7.91 -2.39 -0.02 0.62 16 27 H 0.06 3.32 5.49 -2.39 -0.01 3.30 16 28 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 2.62 6.35 -2.38 -0.02 2.61 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.39 6.00 9.08 -74.05 -0.67 5.33 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.05 1.97 7.81 -2.38 -0.02 1.95 16 38 H 0.04 2.16 6.94 -2.39 -0.02 2.14 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.94 7.17 -2.39 -0.02 1.92 16 Total: -1.00 -60.73 338.42 2.06 -58.67 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.26 Total: 20.90 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 3.01 Total: -26.75 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.26 Total: -82.16 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.98 Total: -17.16 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.73 2.06 -58.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310100121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.858 kcal (2) G-P(sol) polarization free energy of solvation -60.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds