Wall clock time and date at job start Mon Mar 30 2020 07:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00004 * 2 1 4 4 H 1.48494 * 109.47511 * 275.38704 * 3 2 1 5 5 H 1.48501 * 109.47465 * 35.39153 * 3 2 1 6 6 H 1.48508 * 109.47023 * 155.38737 * 3 2 1 7 7 C 1.38817 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00375 * 334.58504 * 7 2 1 9 9 N 1.36946 * 119.99534 * 154.57924 * 7 2 1 10 10 C 1.46501 * 119.99974 * 323.21916 * 9 7 2 11 11 C 1.53005 * 109.46795 * 269.99748 * 10 9 7 12 12 H 1.09003 * 109.47003 * 55.00661 * 11 10 9 13 13 C 1.52993 * 109.47310 * 295.00486 * 11 10 9 14 14 C 1.52999 * 109.47169 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46943 * 59.99785 * 14 13 11 16 16 C 1.53001 * 109.47340 * 299.99864 * 15 14 13 17 17 H 1.08999 * 109.47147 * 180.02562 * 16 15 14 18 18 O 1.42907 * 109.46966 * 300.00489 * 16 15 14 19 19 C 1.52999 * 109.46992 * 60.00166 * 16 15 14 20 20 C 1.46499 * 119.99640 * 143.22012 * 9 7 2 21 21 C 1.54264 * 110.03014 * 300.96858 * 20 9 7 22 22 C 1.54889 * 104.19546 * 95.68035 * 21 20 9 23 23 C 1.54881 * 102.75150 * 37.93953 * 22 21 20 24 24 C 1.53868 * 110.03474 * 58.13690 * 20 9 7 25 25 H 0.97003 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47051 * 29.99956 * 10 9 7 27 27 H 1.09001 * 109.46868 * 150.00026 * 10 9 7 28 28 H 1.09008 * 109.46806 * 300.00078 * 13 11 10 29 29 H 1.08991 * 109.47411 * 59.99794 * 13 11 10 30 30 H 1.09004 * 109.47210 * 179.97438 * 14 13 11 31 31 H 1.08995 * 109.46901 * 299.99650 * 14 13 11 32 32 H 1.08995 * 109.47432 * 60.00190 * 15 14 13 33 33 H 1.09007 * 109.46984 * 180.02562 * 15 14 13 34 34 H 0.96703 * 114.00062 * 299.99484 * 18 16 15 35 35 H 1.08996 * 109.47459 * 180.02562 * 19 16 15 36 36 H 1.09003 * 109.46855 * 59.99864 * 19 16 15 37 37 H 1.09003 * 110.05419 * 179.55771 * 20 9 7 38 38 H 1.09006 * 110.48815 * 214.35197 * 21 20 9 39 39 H 1.08997 * 110.48948 * 336.99819 * 21 20 9 40 40 H 1.09007 * 110.75058 * 279.62346 * 22 21 20 41 41 H 1.09004 * 110.75750 * 156.25858 * 22 21 20 42 42 H 1.09000 * 110.48989 * 203.38704 * 23 22 21 43 43 H 1.08998 * 110.60298 * 80.79178 * 23 22 21 44 44 H 1.09006 * 110.03110 * 359.97438 * 24 20 9 45 45 H 1.09005 * 110.03512 * 121.38218 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3839 2.1122 -1.3938 5 1 1.5093 2.6171 0.8109 6 1 3.6000 1.4099 0.5831 7 6 2.0102 -1.2022 0.0005 8 1 1.5486 -2.0921 0.4023 9 7 3.2802 -1.2598 -0.5086 10 6 3.6345 -0.4625 -1.6854 11 6 3.3645 -1.2762 -2.9527 12 1 2.3285 -1.6150 -2.9532 13 6 4.2975 -2.4882 -2.9891 14 6 4.0280 -3.3014 -4.2567 15 6 4.2796 -2.4270 -5.4867 16 6 3.3466 -1.2150 -5.4504 17 1 3.5255 -0.5923 -6.3269 18 8 1.9883 -1.6593 -5.4515 19 6 3.6161 -0.4017 -4.1828 20 6 4.2845 -2.1188 0.1237 21 6 4.4820 -1.7048 1.5966 22 6 3.5576 -2.6632 2.3878 23 6 3.7137 -3.9996 1.6206 24 6 3.7960 -3.5778 0.1389 25 1 -0.4850 0.8401 -0.0004 26 1 3.0336 0.4468 -1.7025 27 1 4.6912 -0.1990 -1.6410 28 1 5.3336 -2.1492 -2.9886 29 1 4.1186 -3.1108 -2.1126 30 1 4.6930 -4.1647 -4.2828 31 1 2.9921 -3.6403 -4.2575 32 1 5.3156 -2.0882 -5.4859 33 1 4.0872 -3.0063 -6.3898 34 1 1.7463 -2.1825 -6.2279 35 1 2.9511 0.4615 -4.1567 36 1 4.6521 -0.0629 -4.1820 37 1 5.2298 -2.0471 -0.4143 38 1 5.5210 -1.8435 1.8958 39 1 4.1760 -0.6694 1.7462 40 1 2.5244 -2.3175 2.3554 41 1 3.8993 -2.7668 3.4177 42 1 2.8468 -4.6389 1.7876 43 1 4.6276 -4.5109 1.9229 44 1 2.8114 -3.6467 -0.3237 45 1 4.5037 -4.2141 -0.3924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310100123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:28 Heat of formation + Delta-G solvation = -73.644574 kcal Electronic energy + Delta-G solvation = -22584.366926 eV Core-core repulsion = 19600.302873 eV Total energy + Delta-G solvation = -2984.064054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45451 -39.23738 -36.66055 -35.32936 -33.52584 -31.93376 -30.58428 -29.31726 -28.75263 -26.97584 -24.33629 -23.27023 -22.25508 -21.26929 -20.77454 -20.31752 -18.32048 -17.66130 -17.09939 -16.95706 -16.47769 -15.90781 -15.55630 -15.20057 -14.93563 -14.78472 -14.38179 -14.16894 -13.81137 -13.67776 -13.25649 -13.09229 -13.02360 -12.65883 -12.45480 -12.27476 -12.10148 -11.97866 -11.90235 -11.69190 -11.66863 -11.57097 -11.42273 -11.36085 -11.15266 -11.03434 -10.84625 -10.45812 -10.39680 -8.59172 -8.11135 -5.40249 1.29668 1.38845 1.49354 2.48377 3.09642 3.43853 3.49287 3.88093 3.90755 3.97987 4.04370 4.10276 4.26045 4.30730 4.45920 4.57598 4.65112 4.68727 4.72589 4.74236 4.77064 4.81246 4.93082 4.96411 5.00860 5.03339 5.05240 5.12571 5.13258 5.17157 5.27526 5.31502 5.39390 5.44152 5.46227 5.57731 5.60307 5.68721 5.77837 5.82073 6.07462 6.33183 7.02964 7.14109 7.80530 8.21049 9.09765 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.008664 C = 0.006542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.731290 B = 3230.923395 C = 4279.011798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.025 4.025 3 Si 0.926 3.074 4 H -0.285 1.285 5 H -0.317 1.317 6 H -0.257 1.257 7 C -0.214 4.214 8 H 0.045 0.955 9 N -0.604 5.604 10 C 0.135 3.865 11 C -0.086 4.086 12 H 0.032 0.968 13 C -0.107 4.107 14 C -0.111 4.111 15 C -0.139 4.139 16 C 0.105 3.895 17 H 0.068 0.932 18 O -0.586 6.586 19 C -0.113 4.113 20 C 0.167 3.833 21 C -0.131 4.131 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.126 4.126 25 H 0.255 0.745 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.386 0.614 35 H 0.036 0.964 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.038 0.962 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.252 -6.407 -8.742 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.219 4.219 3 Si 0.756 3.244 4 H -0.213 1.213 5 H -0.247 1.247 6 H -0.181 1.181 7 C -0.344 4.344 8 H 0.062 0.938 9 N -0.325 5.325 10 C 0.010 3.990 11 C -0.106 4.106 12 H 0.050 0.950 13 C -0.145 4.145 14 C -0.148 4.148 15 C -0.177 4.177 16 C 0.046 3.954 17 H 0.086 0.914 18 O -0.394 6.394 19 C -0.151 4.151 20 C 0.061 3.939 21 C -0.170 4.170 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.165 4.165 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.235 0.765 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.148 -6.000 -8.162 17.401 hybrid contribution -0.795 1.012 -0.248 1.310 sum 13.353 -4.989 -8.411 16.551 Atomic orbital electron populations 1.70042 1.07593 1.26592 1.55562 1.25922 0.95358 1.00383 1.00286 0.86113 0.79843 0.81841 0.76560 1.21313 1.24686 1.18117 1.18414 0.89368 0.92615 1.33996 0.93786 1.44333 1.08331 1.51463 1.28398 1.21346 0.97575 0.93122 0.86911 1.21352 0.98961 0.96451 0.93880 0.94951 1.21583 0.98289 0.96201 0.98378 1.21398 1.00835 0.98106 0.94506 1.22177 1.00438 0.96578 0.98496 1.21853 0.81596 0.94928 0.96985 0.91373 1.86652 1.28897 1.74663 1.49171 1.21638 1.01663 0.97447 0.94320 1.21291 0.90784 0.89723 0.92093 1.22749 0.98930 0.98409 0.96950 1.22381 0.99084 0.95719 0.98381 1.22246 1.01291 0.96469 0.94911 1.22543 1.00433 0.96935 0.96621 0.93569 0.95996 0.92211 0.91447 0.91858 0.90881 0.93929 0.89676 0.90137 0.76540 0.94505 0.88842 0.90537 0.90123 0.94513 0.94436 0.91222 0.93196 0.89741 0.94314 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.84 13.97 21.65 0.30 -61.54 16 2 C -0.02 -1.47 5.25 84.86 0.45 -1.02 16 3 Si 0.93 48.18 25.24 68.60 1.73 49.91 16 4 H -0.29 -14.51 6.63 99.48 0.66 -13.85 16 5 H -0.32 -16.98 7.11 99.48 0.71 -16.27 16 6 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.21 -11.97 7.73 84.03 0.65 -11.32 16 8 H 0.04 2.76 6.76 -2.91 -0.02 2.74 16 9 N -0.60 -27.57 1.79 -674.00 -1.21 -28.78 16 10 C 0.14 5.76 3.99 86.38 0.34 6.10 16 11 C -0.09 -3.25 2.25 -10.79 -0.02 -3.27 16 12 H 0.03 1.57 7.68 -2.39 -0.02 1.55 16 13 C -0.11 -3.24 4.53 30.59 0.14 -3.10 16 14 C -0.11 -2.81 5.78 30.59 0.18 -2.63 16 15 C -0.14 -2.83 5.64 30.59 0.17 -2.65 16 16 C 0.10 2.68 3.77 30.59 0.12 2.80 16 17 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 18 O -0.59 -17.82 11.97 -148.98 -1.78 -19.60 16 19 C -0.11 -3.58 4.94 30.59 0.15 -3.42 16 20 C 0.17 6.18 2.36 45.71 0.11 6.28 16 21 C -0.13 -4.74 6.11 31.67 0.19 -4.54 16 22 C -0.12 -4.21 6.55 31.88 0.21 -4.00 16 23 C -0.11 -3.48 6.83 31.67 0.22 -3.26 16 24 C -0.13 -4.36 4.54 31.32 0.14 -4.21 16 25 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 26 H 0.02 1.07 3.41 -2.39 -0.01 1.06 16 27 H 0.06 2.20 7.94 -2.39 -0.02 2.18 16 28 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.06 2.09 4.52 -2.39 -0.01 2.08 16 30 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.04 1.28 7.68 -2.39 -0.02 1.26 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.39 7.74 9.08 -74.06 -0.67 7.07 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 2.45 7.48 -2.39 -0.02 2.43 16 38 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 39 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 40 H 0.04 1.65 6.92 -2.38 -0.02 1.63 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 44 H 0.04 1.64 6.93 -2.38 -0.02 1.62 16 45 H 0.07 2.12 7.73 -2.38 -0.02 2.10 16 Total: -1.00 -71.04 326.09 2.32 -68.72 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.23 Total: 19.55 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.04 Total: -28.27 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -0.90 Total: -90.31 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.78 Total: -19.60 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.73 Total: 49.91 kcal Total: -71.04 2.32 -68.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310100123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.926 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds