Wall clock time and date at job start Mon Mar 30 2020 06:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99892 * 2 1 4 4 H 1.48499 * 109.46956 * 239.99898 * 3 2 1 5 5 H 1.48495 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47259 * 119.99795 * 3 2 1 7 7 C 1.37869 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99685 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00230 * 0.27274 * 7 2 1 10 10 C 1.53007 * 115.54932 * 179.72647 * 9 7 2 11 11 N 1.46900 * 109.47044 * 325.58510 * 10 9 7 12 12 C 1.47847 * 110.99813 * 295.23426 * 11 10 9 13 13 C 1.54911 * 104.79277 * 213.63858 * 12 11 10 14 14 C 1.55139 * 101.65390 * 37.07001 * 13 12 11 15 15 C 1.47450 * 110.99651 * 174.39313 * 11 10 9 16 16 H 1.09000 * 109.88555 * 242.66181 * 15 11 10 17 17 C 1.52994 * 109.88857 * 3.68588 * 15 11 10 18 18 C 1.52997 * 109.47116 * 182.33719 * 17 15 11 19 19 C 1.50702 * 109.47178 * 175.31220 * 18 17 15 20 20 O 1.20823 * 120.00083 * 0.02562 * 19 18 17 21 21 O 1.34235 * 120.00043 * 180.02562 * 19 18 17 22 22 C 1.53000 * 117.49699 * 34.05734 * 9 7 2 23 23 C 1.53001 * 117.49718 * 325.39778 * 9 7 2 24 24 H 0.97003 * 119.99861 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46685 * 85.58402 * 10 9 7 26 26 H 1.08999 * 109.46735 * 205.58052 * 10 9 7 27 27 H 1.09003 * 110.37392 * 332.46630 * 12 11 10 28 28 H 1.09000 * 110.37318 * 94.80963 * 12 11 10 29 29 H 1.08999 * 110.98797 * 278.97853 * 13 12 11 30 30 H 1.08998 * 111.02189 * 155.17322 * 13 12 11 31 31 H 1.09000 * 110.70707 * 205.96175 * 14 13 12 32 32 H 1.09003 * 110.70452 * 82.72587 * 14 13 12 33 33 H 1.09002 * 109.47451 * 302.34176 * 17 15 11 34 34 H 1.09001 * 109.46900 * 62.34190 * 17 15 11 35 35 H 1.09000 * 109.47280 * 295.31672 * 18 17 15 36 36 H 1.09002 * 109.46878 * 55.31929 * 18 17 15 37 37 H 0.96695 * 117.00032 * 180.02562 * 21 19 18 38 38 H 1.08994 * 117.50006 * 0.02562 * 22 9 7 39 39 H 1.08998 * 117.49590 * 145.02174 * 22 9 7 40 40 H 1.09002 * 117.49250 * 214.97685 * 23 9 7 41 41 H 1.08992 * 117.49858 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0073 10 6 2.1166 -3.7608 -0.0139 11 7 3.3358 -3.5141 -0.7954 12 6 3.0131 -3.2694 -2.2174 13 6 4.2050 -3.8714 -3.0027 14 6 4.5326 -5.1309 -2.1582 15 6 4.2570 -4.6625 -0.7139 16 1 5.1893 -4.3570 -0.2389 17 6 3.6100 -5.7927 0.0890 18 6 4.5954 -6.9561 0.2173 19 6 4.0029 -8.0209 1.1039 20 8 2.9049 -7.8656 1.5835 21 8 4.6950 -9.1421 1.3607 22 6 -0.0728 -2.5465 -0.7730 23 6 -0.0728 -2.5545 0.7578 24 1 -0.4850 0.8401 -0.0004 25 1 2.3874 -4.0209 1.0094 26 1 1.5577 -4.5824 -0.4619 27 1 2.0861 -3.7745 -2.4885 28 1 2.9336 -2.1994 -2.4097 29 1 5.0493 -3.1822 -3.0196 30 1 3.9076 -4.1463 -4.0146 31 1 5.5782 -5.4144 -2.2785 32 1 3.8746 -5.9572 -2.4275 33 1 3.3467 -5.4285 1.0820 34 1 2.7103 -6.1335 -0.4234 35 1 4.7945 -7.3741 -0.7695 36 1 5.5271 -6.5965 0.6542 37 1 4.2736 -9.7964 1.9345 38 1 -0.3985 -1.6339 -1.2721 39 1 -0.3272 -3.4767 -1.2810 40 1 -0.3272 -3.4900 1.2561 41 1 -0.3985 -1.6472 1.2663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310166436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:26 Heat of formation + Delta-G solvation = -55.740267 kcal Electronic energy + Delta-G solvation = -21265.497594 eV Core-core repulsion = 18146.376835 eV Total energy + Delta-G solvation = -3119.120759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41173 -39.12713 -36.33998 -36.11064 -33.31059 -31.82788 -30.80427 -28.31401 -25.73417 -24.67901 -24.36433 -21.47175 -20.76498 -20.39108 -19.59227 -18.46796 -18.01596 -16.64921 -16.32858 -15.82970 -15.51965 -14.89284 -14.55417 -14.20512 -13.67398 -13.28471 -13.21580 -12.88178 -12.64346 -12.00455 -11.90922 -11.68321 -11.47783 -11.19592 -11.02800 -10.87707 -10.81074 -10.68967 -10.57431 -10.48486 -10.40611 -10.23983 -9.98788 -9.85570 -9.27107 -8.63745 -8.21679 -7.89842 -7.42237 -5.80065 -3.81785 2.11781 2.93084 3.39388 3.43903 3.47332 4.49294 4.54067 4.82524 4.89911 4.92906 5.08531 5.19025 5.23148 5.31322 5.52210 5.64763 5.71496 5.77668 5.94818 6.00707 6.05134 6.13772 6.20492 6.28123 6.37630 6.41191 6.58368 6.60992 6.67223 6.84004 6.87715 7.14752 7.30707 7.40892 7.75504 7.77671 7.81139 8.00616 8.21361 8.33635 8.73246 9.19104 9.72080 11.16652 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.005233 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.267841 B = 5348.973644 C = 5878.224996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.050 3.950 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.447 4.447 8 H 0.074 0.926 9 C 0.022 3.978 10 C 0.095 3.905 11 N -0.499 5.499 12 C 0.057 3.943 13 C -0.133 4.133 14 C -0.139 4.139 15 C 0.070 3.930 16 H 0.081 0.919 17 C -0.128 4.128 18 C -0.110 4.110 19 C 0.474 3.526 20 O -0.511 6.511 21 O -0.523 6.523 22 C -0.193 4.193 23 C -0.190 4.190 24 H 0.255 0.745 25 H 0.064 0.936 26 H 0.015 0.985 27 H 0.038 0.962 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.407 0.593 38 H 0.108 0.892 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.932 -13.969 -2.580 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.150 4.150 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.021 3.979 10 C -0.032 4.032 11 N -0.221 5.221 12 C -0.070 4.070 13 C -0.171 4.171 14 C -0.178 4.178 15 C -0.038 4.038 16 H 0.099 0.901 17 C -0.167 4.167 18 C -0.148 4.148 19 C 0.316 3.684 20 O -0.398 6.398 21 O -0.335 6.335 22 C -0.230 4.230 23 C -0.229 4.229 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.265 0.735 38 H 0.126 0.874 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.896 -13.024 -2.486 16.545 hybrid contribution -0.486 -0.373 0.104 0.621 sum 9.410 -13.397 -2.382 16.545 Atomic orbital electron populations 1.70030 1.05761 1.25641 1.51310 1.25066 0.94880 0.99101 0.95927 0.86625 0.79389 0.83208 0.78491 1.20453 1.21763 1.20486 1.20642 0.93364 0.87871 1.46580 0.90803 1.19013 0.85437 0.92923 1.00495 1.21863 0.89129 0.95865 0.96333 1.63680 1.14554 1.34267 1.09632 1.22936 0.95083 1.02279 0.86750 1.22749 0.99514 0.96705 0.98157 1.22911 1.01075 0.98110 0.95696 1.22531 0.97581 0.89338 0.94372 0.90099 1.22165 0.97733 0.93698 1.03073 1.21429 1.01336 0.92837 0.99217 1.23755 0.83490 0.81700 0.79406 1.90761 1.21179 1.78367 1.49487 1.84549 1.52034 1.30322 1.66585 1.22878 1.06561 0.99285 0.94315 1.22810 1.06072 0.99544 0.94450 0.93460 0.91776 0.96706 0.94350 0.89144 0.91013 0.91661 0.91409 0.91882 0.89624 0.90996 0.87844 0.87531 0.73454 0.87374 0.94695 0.94328 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 8.59 55.43 0.48 -24.60 16 2 C 0.05 1.36 5.27 -17.82 -0.09 1.27 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.45 -12.05 8.02 -34.44 -0.28 -12.33 16 8 H 0.07 2.00 7.22 -52.48 -0.38 1.62 16 9 C 0.02 0.55 1.87 -155.66 -0.29 0.26 16 10 C 0.10 2.00 3.81 -3.82 -0.01 1.99 16 11 N -0.50 -9.35 4.12 -223.34 -0.92 -10.28 16 12 C 0.06 1.03 5.79 -2.29 -0.01 1.01 16 13 C -0.13 -1.82 7.08 -24.59 -0.17 -1.99 16 14 C -0.14 -1.67 5.57 -24.91 -0.14 -1.81 16 15 C 0.07 1.01 3.48 -66.73 -0.23 0.77 16 16 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.13 -1.74 2.71 -26.74 -0.07 -1.82 16 18 C -0.11 -1.10 5.55 -27.88 -0.15 -1.26 16 19 C 0.47 5.48 8.33 36.01 0.30 5.78 16 20 O -0.51 -7.94 16.68 -18.75 -0.31 -8.26 16 21 O -0.52 -4.53 13.42 -39.27 -0.53 -5.06 16 22 C -0.19 -4.88 9.31 -26.69 -0.25 -5.13 16 23 C -0.19 -4.90 9.38 -26.69 -0.25 -5.15 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.06 1.35 6.28 -51.93 -0.33 1.02 16 26 H 0.01 0.31 6.53 -51.93 -0.34 -0.03 16 27 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 28 H 0.09 1.86 7.73 -51.93 -0.40 1.46 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.73 7.78 -51.93 -0.40 0.32 16 33 H 0.09 1.34 6.11 -51.93 -0.32 1.03 16 34 H 0.07 1.08 6.96 -51.93 -0.36 0.72 16 35 H 0.10 0.85 7.52 -51.93 -0.39 0.46 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.41 1.93 9.10 45.56 0.41 2.35 16 38 H 0.11 3.02 6.27 -51.93 -0.33 2.69 16 39 H 0.03 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.11 3.09 6.30 -51.93 -0.33 2.76 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -31.10 320.56 -8.78 -39.88 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.65 Total: 5.44 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.66 Total: -18.40 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.44 Total: -34.87 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.84 Total: -13.32 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.10 -8.78 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310166436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.863 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds