Wall clock time and date at job start Mon Mar 30 2020 06:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99892 * 2 1 4 4 H 1.48499 * 109.46956 * 239.99898 * 3 2 1 5 5 H 1.48495 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47259 * 119.99795 * 3 2 1 7 7 C 1.37869 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99685 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00230 * 0.27274 * 7 2 1 10 10 C 1.53007 * 115.54932 * 179.72647 * 9 7 2 11 11 N 1.46900 * 109.47044 * 325.58510 * 10 9 7 12 12 C 1.47847 * 110.99813 * 295.23426 * 11 10 9 13 13 C 1.54911 * 104.79277 * 213.63858 * 12 11 10 14 14 C 1.55139 * 101.65390 * 37.07001 * 13 12 11 15 15 C 1.47450 * 110.99651 * 174.39313 * 11 10 9 16 16 H 1.09000 * 109.88555 * 242.66181 * 15 11 10 17 17 C 1.52994 * 109.88857 * 3.68588 * 15 11 10 18 18 C 1.52997 * 109.47116 * 182.33719 * 17 15 11 19 19 C 1.50702 * 109.47178 * 175.31220 * 18 17 15 20 20 O 1.20823 * 120.00083 * 0.02562 * 19 18 17 21 21 O 1.34235 * 120.00043 * 180.02562 * 19 18 17 22 22 C 1.53000 * 117.49699 * 34.05734 * 9 7 2 23 23 C 1.53001 * 117.49718 * 325.39778 * 9 7 2 24 24 H 0.97003 * 119.99861 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46685 * 85.58402 * 10 9 7 26 26 H 1.08999 * 109.46735 * 205.58052 * 10 9 7 27 27 H 1.09003 * 110.37392 * 332.46630 * 12 11 10 28 28 H 1.09000 * 110.37318 * 94.80963 * 12 11 10 29 29 H 1.08999 * 110.98797 * 278.97853 * 13 12 11 30 30 H 1.08998 * 111.02189 * 155.17322 * 13 12 11 31 31 H 1.09000 * 110.70707 * 205.96175 * 14 13 12 32 32 H 1.09003 * 110.70452 * 82.72587 * 14 13 12 33 33 H 1.09002 * 109.47451 * 302.34176 * 17 15 11 34 34 H 1.09001 * 109.46900 * 62.34190 * 17 15 11 35 35 H 1.09000 * 109.47280 * 295.31672 * 18 17 15 36 36 H 1.09002 * 109.46878 * 55.31929 * 18 17 15 37 37 H 0.96695 * 117.00032 * 180.02562 * 21 19 18 38 38 H 1.08994 * 117.50006 * 0.02562 * 22 9 7 39 39 H 1.08998 * 117.49590 * 145.02174 * 22 9 7 40 40 H 1.09002 * 117.49250 * 214.97685 * 23 9 7 41 41 H 1.08992 * 117.49858 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0073 10 6 2.1166 -3.7608 -0.0139 11 7 3.3358 -3.5141 -0.7954 12 6 3.0131 -3.2694 -2.2174 13 6 4.2050 -3.8714 -3.0027 14 6 4.5326 -5.1309 -2.1582 15 6 4.2570 -4.6625 -0.7139 16 1 5.1893 -4.3570 -0.2389 17 6 3.6100 -5.7927 0.0890 18 6 4.5954 -6.9561 0.2173 19 6 4.0029 -8.0209 1.1039 20 8 2.9049 -7.8656 1.5835 21 8 4.6950 -9.1421 1.3607 22 6 -0.0728 -2.5465 -0.7730 23 6 -0.0728 -2.5545 0.7578 24 1 -0.4850 0.8401 -0.0004 25 1 2.3874 -4.0209 1.0094 26 1 1.5577 -4.5824 -0.4619 27 1 2.0861 -3.7745 -2.4885 28 1 2.9336 -2.1994 -2.4097 29 1 5.0493 -3.1822 -3.0196 30 1 3.9076 -4.1463 -4.0146 31 1 5.5782 -5.4144 -2.2785 32 1 3.8746 -5.9572 -2.4275 33 1 3.3467 -5.4285 1.0820 34 1 2.7103 -6.1335 -0.4234 35 1 4.7945 -7.3741 -0.7695 36 1 5.5271 -6.5965 0.6542 37 1 4.2736 -9.7964 1.9345 38 1 -0.3985 -1.6339 -1.2721 39 1 -0.3272 -3.4767 -1.2810 40 1 -0.3272 -3.4900 1.2561 41 1 -0.3985 -1.6472 1.2663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310166436.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:26 Heat of formation + Delta-G solvation = -75.592996 kcal Electronic energy + Delta-G solvation = -21266.358473 eV Core-core repulsion = 18146.376835 eV Total energy + Delta-G solvation = -3119.981638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34528 -40.41747 -38.05794 -37.10665 -34.36106 -33.72037 -32.37984 -29.39808 -27.71421 -26.36675 -25.42258 -22.77969 -22.34942 -21.75397 -21.09070 -19.98257 -18.97155 -17.87633 -17.49778 -17.21308 -16.95134 -16.49631 -16.05959 -15.46667 -15.17951 -14.78259 -14.61946 -14.14592 -13.65867 -13.55320 -13.26254 -12.90986 -12.88388 -12.61006 -12.50175 -12.41137 -12.32830 -12.19810 -11.98963 -11.91976 -11.79175 -11.63576 -11.46599 -11.40947 -11.18525 -10.66792 -10.25254 -9.96090 -8.87706 -7.90780 -5.98498 1.25881 1.46237 1.46988 1.54662 2.19086 2.50214 3.08301 3.27882 3.76276 3.89070 3.97816 3.98961 4.00722 4.23484 4.37721 4.46574 4.58608 4.59597 4.66592 4.73432 4.76600 4.82155 4.89717 4.90642 5.05670 5.11551 5.16701 5.25511 5.28076 5.30905 5.37159 5.48095 5.55489 5.66929 5.69696 6.01190 6.19335 6.34027 6.50880 6.67395 7.03267 7.06321 7.57915 9.03936 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.005233 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.267841 B = 5348.973644 C = 5878.224996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.456 4.456 8 H 0.069 0.931 9 C 0.017 3.983 10 C 0.112 3.888 11 N -0.520 5.520 12 C 0.055 3.945 13 C -0.124 4.124 14 C -0.127 4.127 15 C 0.068 3.932 16 H 0.093 0.907 17 C -0.120 4.120 18 C -0.103 4.103 19 C 0.479 3.521 20 O -0.561 6.561 21 O -0.512 6.512 22 C -0.188 4.188 23 C -0.197 4.197 24 H 0.252 0.748 25 H 0.060 0.940 26 H 0.015 0.985 27 H 0.023 0.977 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.425 0.575 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.701 -15.538 -3.403 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.088 0.912 9 C 0.016 3.984 10 C -0.016 4.016 11 N -0.243 5.243 12 C -0.073 4.073 13 C -0.162 4.162 14 C -0.165 4.165 15 C -0.039 4.039 16 H 0.111 0.889 17 C -0.159 4.159 18 C -0.140 4.140 19 C 0.324 3.676 20 O -0.452 6.452 21 O -0.326 6.326 22 C -0.226 4.226 23 C -0.235 4.235 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.286 0.714 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.699 -14.627 -3.309 19.651 hybrid contribution -1.342 0.076 0.386 1.399 sum 11.356 -14.551 -2.923 18.688 Atomic orbital electron populations 1.70194 1.06927 1.25981 1.51987 1.25773 0.95646 1.02192 0.95857 0.85658 0.78155 0.79382 0.78612 1.19765 1.21834 1.20093 1.20837 0.93268 0.88958 1.46328 0.91248 1.19237 0.85601 0.94266 0.99255 1.21570 0.89705 0.93542 0.96741 1.63525 1.13758 1.37290 1.09730 1.22832 0.96763 1.00255 0.87418 1.22706 0.97436 0.97352 0.98721 1.22894 1.03525 0.97242 0.92878 1.22647 0.96629 0.88116 0.96547 0.88876 1.21948 0.98074 0.94882 1.00987 1.21407 1.00755 0.91142 1.00734 1.24013 0.82675 0.82286 0.78618 1.90759 1.23416 1.79452 1.51601 1.84501 1.51479 1.29901 1.66675 1.22690 1.07292 0.98697 0.93908 1.22699 1.07317 0.99029 0.94496 0.93849 0.92128 0.96722 0.95838 0.92747 0.90531 0.89794 0.87718 0.91046 0.92434 0.92895 0.84918 0.84984 0.71397 0.90099 0.93054 0.92684 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.05 8.59 21.45 0.18 -52.86 16 2 C 0.00 0.14 5.27 84.65 0.45 0.58 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.46 -25.13 8.02 25.60 0.21 -24.92 16 8 H 0.07 3.82 7.22 -2.91 -0.02 3.80 16 9 C 0.02 0.88 1.87 -52.93 -0.10 0.78 16 10 C 0.11 4.77 3.81 86.31 0.33 5.10 16 11 N -0.52 -19.26 4.12 -860.52 -3.55 -22.80 16 12 C 0.06 1.97 5.79 86.77 0.50 2.48 16 13 C -0.12 -3.05 7.08 31.98 0.23 -2.83 16 14 C -0.13 -2.52 5.57 31.77 0.18 -2.34 16 15 C 0.07 1.79 3.48 45.25 0.16 1.95 16 16 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 17 C -0.12 -3.08 2.71 30.59 0.08 -3.00 16 18 C -0.10 -1.70 5.55 29.85 0.17 -1.54 16 19 C 0.48 10.02 8.33 71.24 0.59 10.62 16 20 O -0.56 -17.17 16.68 21.97 0.37 -16.80 16 21 O -0.51 -7.33 13.42 -51.47 -0.69 -8.02 16 22 C -0.19 -9.82 9.31 30.62 0.29 -9.54 16 23 C -0.20 -10.43 9.38 30.62 0.29 -10.15 16 24 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.06 2.59 6.28 -2.39 -0.01 2.58 16 26 H 0.01 0.62 6.53 -2.39 -0.02 0.60 16 27 H 0.02 0.89 7.70 -2.39 -0.02 0.87 16 28 H 0.05 2.30 7.73 -2.39 -0.02 2.28 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.34 7.78 -2.39 -0.02 1.32 16 33 H 0.06 1.79 6.11 -2.39 -0.01 1.78 16 34 H 0.05 1.54 6.96 -2.39 -0.02 1.53 16 35 H 0.13 1.50 7.52 -2.39 -0.02 1.48 16 36 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.42 2.94 9.10 -74.06 -0.67 2.26 16 38 H 0.08 4.69 6.27 -2.39 -0.01 4.68 16 39 H 0.05 2.46 8.05 -2.39 -0.02 2.44 16 40 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.08 4.82 6.30 -2.39 -0.02 4.80 16 Total: -1.00 -69.86 320.56 2.05 -67.81 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.35 Total: 18.74 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 3.36 Total: -32.81 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -3.36 Total: -75.67 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.32 Total: -24.82 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.86 2.05 -67.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310166436.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.785 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds