Wall clock time and date at job start Mon Mar 30 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 13 13 N 1.46500 * 109.47007 * 60.00219 * 12 2 1 14 14 C 1.34134 * 118.70635 * 269.73461 * 13 12 2 15 15 O 1.21230 * 119.36262 * 359.45221 * 14 13 12 16 16 C 1.50598 * 121.27765 * 179.20128 * 14 13 12 17 17 C 1.53238 * 109.05363 * 29.56932 * 16 14 13 18 18 C 1.52995 * 109.62385 * 184.45882 * 17 16 14 19 19 C 1.53002 * 109.77178 * 63.99283 * 17 16 14 20 20 C 1.53252 * 108.56888 * 304.18028 * 17 16 14 21 21 C 1.34145 * 118.70423 * 89.99863 * 13 12 2 22 22 O 1.21223 * 119.36185 * 0.54654 * 21 13 12 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 31 31 H 1.08996 * 109.46952 * 300.00302 * 12 2 1 32 32 H 1.09004 * 109.74310 * 269.59492 * 16 14 13 33 33 H 1.08997 * 109.40852 * 149.34476 * 16 14 13 34 34 H 1.08996 * 109.47307 * 179.08067 * 18 17 16 35 35 H 1.09004 * 109.46635 * 299.07223 * 18 17 16 36 36 H 1.08997 * 109.47434 * 59.07676 * 18 17 16 37 37 H 1.08997 * 109.46909 * 300.83036 * 19 17 16 38 38 H 1.08996 * 109.47044 * 60.83403 * 19 17 16 39 39 H 1.09003 * 109.47057 * 180.83334 * 19 17 16 40 40 H 1.09000 * 109.51968 * 295.71032 * 20 17 16 41 41 H 1.08996 * 109.52341 * 175.51911 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.6303 -0.5441 4.4120 10 1 1.3443 -0.9490 5.1123 11 1 2.4878 -2.5654 3.7123 12 6 2.0401 -0.7213 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 0.3790 -0.4098 -2.9746 15 8 -0.2403 -1.3159 -2.4597 16 6 -0.1860 0.2721 -4.1927 17 6 0.9685 0.7940 -5.0545 18 6 0.4090 1.5854 -6.2383 19 6 1.8019 -0.3810 -5.5700 20 6 1.8460 1.7085 -4.1929 21 6 2.2977 0.9524 -2.9714 22 8 3.3561 1.2373 -2.4537 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 0.7094 1.1618 3.4844 30 1 3.1301 -0.7217 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 -0.8188 1.1057 -3.8878 33 1 -0.7753 -0.4426 -4.7672 34 1 1.2325 1.9692 -6.8405 35 1 -0.2145 0.9328 -6.8494 36 1 -0.1895 2.4180 -5.8685 37 1 2.1939 -0.9468 -4.7248 38 1 1.1756 -1.0297 -6.1824 39 1 2.6300 -0.0036 -6.1699 40 1 1.2713 2.5831 -3.8881 41 1 2.7162 2.0254 -4.7677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315688124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:45 Heat of formation + Delta-G solvation = -81.616605 kcal Electronic energy + Delta-G solvation = -22326.111116 eV Core-core repulsion = 19205.868275 eV Total energy + Delta-G solvation = -3120.242841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56024 -38.29201 -37.39384 -35.63085 -33.84695 -31.10127 -28.75457 -28.65476 -27.55599 -25.57202 -25.48490 -24.73115 -22.79977 -20.50410 -18.98361 -17.34565 -17.19228 -16.44593 -16.10704 -15.67243 -14.89542 -14.75192 -14.44743 -14.04106 -13.96662 -13.26737 -13.13509 -12.75096 -12.43910 -12.43162 -12.38019 -11.95016 -11.73635 -11.59476 -11.17356 -11.07911 -11.01983 -10.97342 -10.65682 -10.57379 -10.18682 -10.10367 -10.05337 -9.65841 -9.65616 -9.27602 -8.67582 -8.50442 -8.25817 -5.90380 -4.00817 2.01241 3.10636 3.33161 3.34542 3.40805 3.44755 4.19220 4.35425 4.46486 4.49849 4.53292 4.94024 5.17220 5.32867 5.35561 5.44315 5.44472 5.48288 5.60612 5.67262 5.78753 5.85764 5.92072 6.04827 6.18104 6.18304 6.43306 6.60969 6.95557 7.02698 7.16878 7.21558 7.57328 7.58005 7.76507 7.80110 8.01499 8.19663 8.23033 8.37167 8.51774 8.98576 9.63492 11.10666 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035715 B = 0.005817 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.795663 B = 4811.996265 C = 5021.984079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.058 3.942 3 C -0.120 4.120 4 C -0.503 4.503 5 H 0.055 0.945 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.105 3.895 13 N -0.555 5.555 14 C 0.519 3.481 15 O -0.495 6.495 16 C -0.135 4.135 17 C -0.068 4.068 18 C -0.138 4.138 19 C -0.151 4.151 20 C -0.135 4.135 21 C 0.519 3.481 22 O -0.495 6.495 23 H -0.003 1.003 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.032 0.968 28 H -0.003 1.003 29 H 0.258 0.742 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 2.248 -17.638 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.057 3.943 3 C -0.177 4.177 4 C -0.541 4.541 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.015 4.015 13 N -0.296 5.296 14 C 0.308 3.692 15 O -0.368 6.368 16 C -0.174 4.174 17 C -0.068 4.068 18 C -0.195 4.195 19 C -0.208 4.208 20 C -0.175 4.175 21 C 0.308 3.692 22 O -0.367 6.367 23 H 0.016 0.984 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.016 0.984 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.439 2.025 -16.949 17.130 hybrid contribution 0.264 -0.354 0.924 1.024 sum -1.176 1.671 -16.025 16.155 Atomic orbital electron populations 1.21780 0.97507 0.99316 0.99127 1.18394 0.92903 0.92827 0.90170 1.21783 0.98842 0.97981 0.99124 1.20947 1.31275 1.11917 0.89985 0.92647 1.24876 0.94916 0.94955 0.98773 1.69834 1.36760 1.22824 1.22996 0.86584 0.78509 0.80090 0.82735 1.20757 1.21308 1.19952 1.22244 0.99521 0.96609 0.83113 1.46613 1.20503 1.33868 1.28629 1.20604 0.80372 0.83296 0.84908 1.90741 1.56810 1.28472 1.60746 1.22069 0.98707 1.02528 0.94143 1.20731 0.94575 0.95948 0.95565 1.21817 1.01184 0.99843 0.96650 1.21998 0.99942 0.97241 1.01600 1.22073 1.02217 0.99071 0.94104 1.20602 0.84197 0.79414 0.84967 1.90740 1.22183 1.63128 1.60694 0.98447 0.94906 0.90300 0.90306 0.94905 0.98447 0.93145 0.90257 0.90239 0.87550 0.87479 0.91895 0.91895 0.91969 0.92492 0.91679 0.91673 0.87589 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 6.89 37.16 0.26 -2.81 16 2 C 0.06 1.48 0.57 -155.66 -0.09 1.39 16 3 C -0.12 -3.07 6.89 37.16 0.26 -2.81 16 4 C -0.50 -14.01 8.01 -34.44 -0.28 -14.29 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.84 5.15 -17.82 -0.09 1.74 16 7 N -0.89 -25.21 9.35 55.43 0.52 -24.69 16 8 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.10 2.35 4.28 -4.04 -0.02 2.33 16 13 N -0.55 -10.32 1.84 -115.78 -0.21 -10.54 16 14 C 0.52 8.85 4.95 -11.32 -0.06 8.79 16 15 O -0.49 -10.19 14.55 5.60 0.08 -10.11 16 16 C -0.13 -1.53 4.87 -27.81 -0.14 -1.66 16 17 C -0.07 -0.63 0.78 -154.26 -0.12 -0.75 16 18 C -0.14 -0.89 8.51 37.15 0.32 -0.57 16 19 C -0.15 -1.43 8.14 37.16 0.30 -1.13 16 20 C -0.13 -1.53 4.86 -27.80 -0.14 -1.66 16 21 C 0.52 8.85 4.98 -11.32 -0.06 8.79 16 22 O -0.49 -10.19 14.52 5.61 0.08 -10.11 16 23 H 0.00 -0.08 6.17 -51.93 -0.32 -0.40 16 24 H 0.03 0.85 7.65 -51.93 -0.40 0.46 16 25 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 26 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 27 H 0.03 0.86 7.63 -51.93 -0.40 0.46 16 28 H 0.00 -0.08 6.15 -51.93 -0.32 -0.40 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.08 1.81 7.28 -51.93 -0.38 1.43 16 31 H 0.08 1.82 7.27 -51.93 -0.38 1.44 16 32 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.69 6.47 -51.93 -0.34 0.35 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -32.14 310.09 -6.23 -38.37 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.50 Total: -1.61 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.15 Total: -2.64 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.31 Total: -35.23 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.16 Total: -20.22 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.14 -6.23 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315688124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.246 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds