Wall clock time and date at job start Mon Mar 30 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 13 13 N 1.46500 * 109.47007 * 60.00219 * 12 2 1 14 14 C 1.34134 * 118.70635 * 269.73461 * 13 12 2 15 15 O 1.21230 * 119.36262 * 359.45221 * 14 13 12 16 16 C 1.50598 * 121.27765 * 179.20128 * 14 13 12 17 17 C 1.53238 * 109.05363 * 29.56932 * 16 14 13 18 18 C 1.52995 * 109.62385 * 184.45882 * 17 16 14 19 19 C 1.53002 * 109.77178 * 63.99283 * 17 16 14 20 20 C 1.53252 * 108.56888 * 304.18028 * 17 16 14 21 21 C 1.34145 * 118.70423 * 89.99863 * 13 12 2 22 22 O 1.21223 * 119.36185 * 0.54654 * 21 13 12 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 31 31 H 1.08996 * 109.46952 * 300.00302 * 12 2 1 32 32 H 1.09004 * 109.74310 * 269.59492 * 16 14 13 33 33 H 1.08997 * 109.40852 * 149.34476 * 16 14 13 34 34 H 1.08996 * 109.47307 * 179.08067 * 18 17 16 35 35 H 1.09004 * 109.46635 * 299.07223 * 18 17 16 36 36 H 1.08997 * 109.47434 * 59.07676 * 18 17 16 37 37 H 1.08997 * 109.46909 * 300.83036 * 19 17 16 38 38 H 1.08996 * 109.47044 * 60.83403 * 19 17 16 39 39 H 1.09003 * 109.47057 * 180.83334 * 19 17 16 40 40 H 1.09000 * 109.51968 * 295.71032 * 20 17 16 41 41 H 1.08996 * 109.52341 * 175.51911 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.6303 -0.5441 4.4120 10 1 1.3443 -0.9490 5.1123 11 1 2.4878 -2.5654 3.7123 12 6 2.0401 -0.7213 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 0.3790 -0.4098 -2.9746 15 8 -0.2403 -1.3159 -2.4597 16 6 -0.1860 0.2721 -4.1927 17 6 0.9685 0.7940 -5.0545 18 6 0.4090 1.5854 -6.2383 19 6 1.8019 -0.3810 -5.5700 20 6 1.8460 1.7085 -4.1929 21 6 2.2977 0.9524 -2.9714 22 8 3.3561 1.2373 -2.4537 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 0.7094 1.1618 3.4844 30 1 3.1301 -0.7217 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 -0.8188 1.1057 -3.8878 33 1 -0.7753 -0.4426 -4.7672 34 1 1.2325 1.9692 -6.8405 35 1 -0.2145 0.9328 -6.8494 36 1 -0.1895 2.4180 -5.8685 37 1 2.1939 -0.9468 -4.7248 38 1 1.1756 -1.0297 -6.1824 39 1 2.6300 -0.0036 -6.1699 40 1 1.2713 2.5831 -3.8881 41 1 2.7162 2.0254 -4.7677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315688124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:44 Heat of formation + Delta-G solvation = -101.278998 kcal Electronic energy + Delta-G solvation = -22326.963742 eV Core-core repulsion = 19205.868275 eV Total energy + Delta-G solvation = -3121.095467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.90134 -39.73445 -38.54480 -37.35539 -35.49423 -33.10925 -29.78333 -29.75845 -28.18627 -27.68549 -27.44469 -26.52237 -24.16095 -21.68155 -20.68132 -18.57905 -18.45915 -18.15935 -17.65171 -17.49257 -16.45471 -15.96828 -15.65527 -15.35878 -15.19564 -14.81031 -14.60378 -14.23986 -14.08284 -13.79879 -13.24481 -13.15246 -13.02928 -12.92421 -12.69150 -12.63775 -12.52068 -12.36004 -12.20599 -12.19455 -11.89991 -11.80062 -11.70770 -11.47979 -11.08647 -10.95183 -10.69976 -10.40896 -10.28516 -8.04819 -6.22597 0.67801 1.40115 1.40413 1.50401 1.75859 2.01207 2.43112 3.13277 3.17516 3.50483 3.62179 3.71587 4.11124 4.29484 4.38463 4.45166 4.54337 4.54953 4.63203 4.71812 4.72808 4.88010 4.90936 4.91770 4.94938 4.97349 5.10511 5.11241 5.13114 5.22038 5.33417 5.44078 5.53228 5.57518 5.60563 6.04633 6.10916 6.17824 6.36816 6.73763 6.80299 6.94759 7.44372 8.94565 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035715 B = 0.005817 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.795663 B = 4811.996265 C = 5021.984079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.050 3.950 3 C -0.099 4.099 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.022 3.978 7 N -0.905 5.905 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.117 3.883 13 N -0.562 5.562 14 C 0.513 3.487 15 O -0.539 6.539 16 C -0.127 4.127 17 C -0.057 4.057 18 C -0.131 4.131 19 C -0.153 4.153 20 C -0.127 4.127 21 C 0.513 3.487 22 O -0.539 6.539 23 H 0.013 0.987 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 3.252 -19.971 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.049 3.951 3 C -0.156 4.156 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.197 1.197 12 C -0.005 4.005 13 N -0.303 5.303 14 C 0.305 3.695 15 O -0.414 6.414 16 C -0.166 4.166 17 C -0.057 4.057 18 C -0.188 4.188 19 C -0.210 4.210 20 C -0.166 4.166 21 C 0.305 3.695 22 O -0.414 6.414 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.146 0.854 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.157 3.044 -19.321 19.678 hybrid contribution 0.501 -0.690 1.630 1.840 sum -1.655 2.355 -17.691 17.923 Atomic orbital electron populations 1.21526 0.97523 0.97998 0.98604 1.18413 0.92767 0.92847 0.91032 1.21529 0.97509 0.98006 0.98599 1.21260 1.31751 1.12190 0.91501 0.93396 1.25587 0.95051 0.95652 1.01398 1.69950 1.37164 1.23596 1.23620 0.85634 0.78099 0.79039 0.79316 1.20261 1.20636 1.19664 1.21696 0.98597 0.96085 0.84112 1.46753 1.21605 1.34334 1.27610 1.21812 0.79100 0.82668 0.85882 1.90723 1.57758 1.30525 1.62425 1.22230 0.99600 1.03187 0.91577 1.20730 0.93297 0.95706 0.95979 1.21787 1.01914 0.99901 0.95179 1.22047 1.00857 0.97396 1.00698 1.22233 1.03795 0.99054 0.91523 1.21811 0.83224 0.78476 0.85955 1.90721 1.24042 1.64273 1.62371 0.96797 0.96509 0.92665 0.92673 0.96519 0.96797 0.93039 0.91555 0.91560 0.85375 0.85344 0.90551 0.90553 0.90807 0.95940 0.90099 0.90112 0.85423 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.18 6.89 71.98 0.50 -4.68 16 2 C 0.05 2.65 0.57 -52.93 -0.03 2.62 16 3 C -0.10 -5.18 6.89 71.98 0.50 -4.68 16 4 C -0.53 -30.41 8.01 25.60 0.21 -30.21 16 5 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 6 C 0.02 1.27 5.15 84.66 0.44 1.70 16 7 N -0.90 -52.44 9.35 21.45 0.20 -52.24 16 8 Si 0.95 45.11 29.54 68.60 2.03 47.14 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.12 5.45 4.28 86.38 0.37 5.82 16 13 N -0.56 -20.99 1.84 -757.75 -1.39 -22.38 16 14 C 0.51 17.09 4.95 87.73 0.43 17.52 16 15 O -0.54 -22.39 14.55 -2.88 -0.04 -22.43 16 16 C -0.13 -2.45 4.87 29.90 0.15 -2.31 16 17 C -0.06 -0.84 0.78 -52.02 -0.04 -0.88 16 18 C -0.13 -0.96 8.51 71.98 0.61 -0.35 16 19 C -0.15 -2.47 8.14 71.98 0.59 -1.89 16 20 C -0.13 -2.45 4.86 29.90 0.15 -2.31 16 21 C 0.51 17.09 4.98 87.72 0.44 17.52 16 22 O -0.54 -22.38 14.52 -2.85 -0.04 -22.42 16 23 H 0.01 0.63 6.17 -2.39 -0.01 0.62 16 24 H 0.02 0.88 7.65 -2.39 -0.02 0.86 16 25 H 0.05 3.14 6.07 -2.39 -0.01 3.13 16 26 H 0.05 3.14 6.07 -2.39 -0.01 3.13 16 27 H 0.02 0.87 7.63 -2.39 -0.02 0.85 16 28 H 0.01 0.63 6.15 -2.39 -0.01 0.62 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.07 3.20 7.28 -2.39 -0.02 3.18 16 31 H 0.07 3.20 7.27 -2.39 -0.02 3.18 16 32 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.02 0.51 6.47 -2.39 -0.02 0.49 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.14 310.09 6.05 -67.09 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.01 Total: 7.36 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.29 Total: -2.10 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -1.19 Total: -74.62 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.08 Total: -44.85 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.14 6.05 -67.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315688124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.193 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds