Wall clock time and date at job start Mon Mar 30 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48501 * 109.47286 * 270.00102 * 3 2 1 5 5 H 1.48502 * 109.46871 * 30.00079 * 3 2 1 6 6 H 1.48500 * 109.47114 * 150.00143 * 3 2 1 7 7 C 1.37878 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00297 * 179.97438 * 7 2 1 10 10 O 1.42893 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00022 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47586 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46542 * 65.00235 * 12 11 10 14 14 C 1.46905 * 110.99537 * 184.07018 * 13 12 11 15 15 C 1.52999 * 109.46982 * 132.23096 * 14 13 12 16 16 C 1.53783 * 113.61502 * 39.13332 * 15 14 13 17 17 C 1.53951 * 87.02252 * 220.04628 * 16 15 14 18 18 C 1.53780 * 113.61796 * 301.52748 * 15 14 13 19 19 C 1.52997 * 109.46747 * 252.22642 * 14 13 12 20 20 C 1.53787 * 113.61175 * 162.91389 * 19 14 13 21 21 C 1.53958 * 87.01888 * 220.05398 * 20 19 14 22 22 C 1.53782 * 87.11297 * 25.36163 * 21 20 19 23 23 H 0.97001 * 120.00420 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46708 * 59.99406 * 9 7 2 25 25 H 1.09006 * 109.46881 * 300.00354 * 9 7 2 26 26 H 1.09006 * 109.46796 * 60.00008 * 11 10 9 27 27 H 1.08998 * 109.47095 * 300.00247 * 11 10 9 28 28 H 1.08995 * 109.47494 * 185.00133 * 12 11 10 29 29 H 1.09005 * 109.47061 * 305.00464 * 12 11 10 30 30 H 1.00901 * 110.99931 * 60.11646 * 13 12 11 31 31 H 1.08993 * 109.47326 * 12.23333 * 14 13 12 32 32 H 1.08997 * 112.85003 * 170.33265 * 15 14 13 33 33 H 1.08997 * 113.61693 * 334.57217 * 16 15 14 34 34 H 1.09001 * 113.61407 * 105.47144 * 16 15 14 35 35 H 1.08999 * 113.53794 * 270.81521 * 17 16 15 36 36 H 1.09001 * 113.74235 * 139.94364 * 17 16 15 37 37 H 1.08997 * 113.61949 * 254.53537 * 18 15 14 38 38 H 1.09003 * 113.61019 * 25.43137 * 18 15 14 39 39 H 1.08999 * 112.85402 * 294.10913 * 19 14 13 40 40 H 1.09006 * 113.61465 * 334.56738 * 20 19 14 41 41 H 1.08996 * 113.61486 * 105.47215 * 20 19 14 42 42 H 1.09004 * 113.53212 * 270.80910 * 21 20 19 43 43 H 1.08993 * 113.74297 * 139.94594 * 21 20 19 44 44 H 1.09002 * 113.61154 * 220.09385 * 22 21 20 45 45 H 1.08998 * 113.60959 * 89.19102 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5412 -0.0022 11 6 5.4125 -2.6541 -0.0034 12 6 5.8071 -4.1323 -0.0039 13 7 5.3668 -4.7561 -1.2589 14 6 5.6430 -6.1990 -1.2547 15 6 4.3964 -6.9582 -1.7133 16 6 3.6407 -6.2660 -2.8600 17 6 2.3411 -6.6741 -2.1426 18 6 3.1583 -6.6944 -0.8401 19 6 6.8021 -6.4990 -2.2072 20 6 7.4454 -7.8772 -1.9797 21 6 8.8035 -7.1941 -2.2228 22 6 8.1400 -5.8856 -1.7617 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6799 -0.8912 26 1 5.8159 -2.1710 0.8866 27 1 5.8145 -2.1700 -0.8934 28 1 6.8899 -4.2194 0.0848 29 1 5.3319 -4.6355 0.8383 30 1 5.7952 -4.3082 -2.0551 31 1 5.9102 -6.5148 -0.2463 32 1 4.5871 -8.0163 -1.8921 33 1 3.7981 -5.1882 -2.8988 34 1 3.7768 -6.7497 -3.8273 35 1 1.9692 -7.6546 -2.4400 36 1 1.5691 -5.9049 -2.1618 37 1 2.9057 -7.5233 -0.1789 38 1 3.1836 -5.7339 -0.3255 39 1 6.5557 -6.2990 -3.2500 40 1 7.3220 -8.2545 -0.9644 41 1 7.1830 -8.6125 -2.7403 42 1 9.1049 -7.1853 -3.2702 43 1 9.5943 -7.5406 -1.5576 44 1 8.4377 -5.0154 -2.3468 45 1 8.2069 -5.7174 -0.6869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325007958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:04 Heat of formation + Delta-G solvation = -14.406941 kcal Electronic energy + Delta-G solvation = -21148.401930 eV Core-core repulsion = 18166.906613 eV Total energy + Delta-G solvation = -2981.495317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.99385 -37.78623 -36.99788 -34.69390 -32.55020 -30.20884 -27.95688 -26.41848 -25.61422 -25.28976 -24.59244 -21.84271 -21.63594 -21.26450 -19.48202 -18.72180 -16.84416 -16.22637 -15.91468 -15.41159 -15.23959 -15.15313 -14.56185 -14.29723 -13.81488 -13.58634 -13.00686 -12.68823 -12.55607 -12.35569 -12.28608 -12.22078 -11.80223 -11.75177 -11.42052 -11.35735 -10.93256 -10.79462 -10.67700 -10.66041 -10.54941 -10.34479 -9.98158 -9.81920 -9.77466 -9.71795 -9.10655 -8.77114 -8.38752 -7.99213 -6.06084 -4.04113 3.27587 3.34394 3.35932 4.18415 4.39851 4.41074 4.49539 4.58973 4.70818 4.74347 4.96005 5.10734 5.18814 5.25289 5.29857 5.33248 5.45293 5.48742 5.53220 5.58405 5.62388 5.67647 5.71742 5.80368 5.84903 5.93684 5.97316 6.00265 6.07740 6.15875 6.24948 6.26026 6.30730 6.43062 6.55008 6.66781 6.70885 7.04007 7.06619 7.31963 7.63900 7.66625 8.12341 8.75200 9.07569 9.53947 11.07131 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.004423 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.195412 B = 6328.549020 C = 7231.009336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.363 6.363 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.664 5.664 14 C 0.108 3.892 15 C -0.102 4.102 16 C -0.124 4.124 17 C -0.144 4.144 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.141 4.141 23 H 0.265 0.735 24 H -0.001 1.001 25 H -0.005 1.005 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.338 0.662 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.542 -14.554 -4.300 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.282 6.282 11 C -0.016 4.016 12 C -0.063 4.063 13 N -0.294 5.294 14 C -0.002 4.002 15 C -0.121 4.121 16 C -0.162 4.162 17 C -0.182 4.182 18 C -0.164 4.164 19 C -0.148 4.148 20 C -0.170 4.170 21 C -0.179 4.179 22 C -0.179 4.179 23 H 0.075 0.925 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.157 0.843 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.586 -14.643 -4.072 21.770 hybrid contribution 1.553 1.190 -0.157 1.963 sum 17.139 -13.453 -4.229 22.195 Atomic orbital electron populations 1.69878 1.06031 1.26940 1.50726 1.24764 0.94769 0.98652 0.94824 0.86870 0.80326 0.83947 0.78683 1.20016 1.20877 1.19217 1.20900 0.88325 0.95256 1.50621 0.89896 1.20571 0.96179 0.80057 0.93964 1.88012 1.16766 1.28541 1.94847 1.22305 0.85717 0.94943 0.98678 1.22050 0.96279 0.94649 0.93327 1.60325 1.63361 1.01702 1.03986 1.21422 0.92553 0.88792 0.97422 1.22530 0.93678 0.97703 0.98154 1.22834 0.95668 1.02217 0.95437 1.22760 0.97310 1.00588 0.97504 1.22848 0.95099 1.02499 0.95963 1.23150 0.94194 0.96776 1.00714 1.22898 0.95885 0.96382 1.01817 1.22822 0.96855 0.97020 1.01247 1.22966 0.96492 0.97253 1.01168 0.92472 0.98374 0.98692 0.94387 0.94773 0.94876 0.90499 0.84348 0.91642 0.90423 0.88262 0.93429 0.91655 0.91313 0.93260 0.88151 0.88966 0.90230 0.91651 0.90430 0.91774 0.91699 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.51 -15.46 9.99 -34.44 -0.34 -15.81 16 8 H 0.08 2.74 8.06 -52.48 -0.42 2.32 16 9 C 0.17 4.32 4.76 36.01 0.17 4.49 16 10 O -0.36 -8.45 10.27 -35.23 -0.36 -8.81 16 11 C 0.06 1.07 6.25 37.16 0.23 1.30 16 12 C 0.07 0.92 5.80 -3.82 -0.02 0.89 16 13 N -0.66 -8.87 4.09 -106.73 -0.44 -9.31 16 14 C 0.11 1.21 1.89 -67.71 -0.13 1.09 16 15 C -0.10 -1.22 3.52 -89.81 -0.32 -1.54 16 16 C -0.12 -1.65 7.47 -25.83 -0.19 -1.84 16 17 C -0.14 -2.04 8.09 -25.83 -0.21 -2.25 16 18 C -0.13 -1.81 7.53 -25.92 -0.20 -2.01 16 19 C -0.13 -1.19 2.83 -89.80 -0.25 -1.45 16 20 C -0.13 -1.09 7.49 -25.82 -0.19 -1.28 16 21 C -0.14 -1.10 8.09 -25.83 -0.21 -1.31 16 22 C -0.14 -1.22 7.22 -25.92 -0.19 -1.41 16 23 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.00 -0.04 7.20 -51.93 -0.37 -0.41 16 25 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.38 6.96 -51.93 -0.36 0.02 16 29 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 30 H 0.34 4.31 8.18 -39.29 -0.32 3.99 16 31 H 0.07 0.76 7.44 -51.93 -0.39 0.37 16 32 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 33 H 0.10 1.52 6.92 -51.93 -0.36 1.16 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.75 7.65 -51.93 -0.40 1.36 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.71 7.20 -51.93 -0.37 0.34 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -31.02 352.12 -9.79 -40.81 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.46 Total: 1.34 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.95 Total: -19.10 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.34 Total: -36.57 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.36 Total: -8.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.02 -9.79 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325007958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.402 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds