Wall clock time and date at job start Mon Mar 30 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48501 * 109.47286 * 270.00102 * 3 2 1 5 5 H 1.48502 * 109.46871 * 30.00079 * 3 2 1 6 6 H 1.48500 * 109.47114 * 150.00143 * 3 2 1 7 7 C 1.37878 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00297 * 179.97438 * 7 2 1 10 10 O 1.42893 * 109.47085 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00022 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47586 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46542 * 65.00235 * 12 11 10 14 14 C 1.46905 * 110.99537 * 184.07018 * 13 12 11 15 15 C 1.52999 * 109.46982 * 132.23096 * 14 13 12 16 16 C 1.53783 * 113.61502 * 39.13332 * 15 14 13 17 17 C 1.53951 * 87.02252 * 220.04628 * 16 15 14 18 18 C 1.53780 * 113.61796 * 301.52748 * 15 14 13 19 19 C 1.52997 * 109.46747 * 252.22642 * 14 13 12 20 20 C 1.53787 * 113.61175 * 162.91389 * 19 14 13 21 21 C 1.53958 * 87.01888 * 220.05398 * 20 19 14 22 22 C 1.53782 * 87.11297 * 25.36163 * 21 20 19 23 23 H 0.97001 * 120.00420 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46708 * 59.99406 * 9 7 2 25 25 H 1.09006 * 109.46881 * 300.00354 * 9 7 2 26 26 H 1.09006 * 109.46796 * 60.00008 * 11 10 9 27 27 H 1.08998 * 109.47095 * 300.00247 * 11 10 9 28 28 H 1.08995 * 109.47494 * 185.00133 * 12 11 10 29 29 H 1.09005 * 109.47061 * 305.00464 * 12 11 10 30 30 H 1.00901 * 110.99931 * 60.11646 * 13 12 11 31 31 H 1.08993 * 109.47326 * 12.23333 * 14 13 12 32 32 H 1.08997 * 112.85003 * 170.33265 * 15 14 13 33 33 H 1.08997 * 113.61693 * 334.57217 * 16 15 14 34 34 H 1.09001 * 113.61407 * 105.47144 * 16 15 14 35 35 H 1.08999 * 113.53794 * 270.81521 * 17 16 15 36 36 H 1.09001 * 113.74235 * 139.94364 * 17 16 15 37 37 H 1.08997 * 113.61949 * 254.53537 * 18 15 14 38 38 H 1.09003 * 113.61019 * 25.43137 * 18 15 14 39 39 H 1.08999 * 112.85402 * 294.10913 * 19 14 13 40 40 H 1.09006 * 113.61465 * 334.56738 * 20 19 14 41 41 H 1.08996 * 113.61486 * 105.47215 * 20 19 14 42 42 H 1.09004 * 113.53212 * 270.80910 * 21 20 19 43 43 H 1.08993 * 113.74297 * 139.94594 * 21 20 19 44 44 H 1.09002 * 113.61154 * 220.09385 * 22 21 20 45 45 H 1.08998 * 113.60959 * 89.19102 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5412 -0.0022 11 6 5.4125 -2.6541 -0.0034 12 6 5.8071 -4.1323 -0.0039 13 7 5.3668 -4.7561 -1.2589 14 6 5.6430 -6.1990 -1.2547 15 6 4.3964 -6.9582 -1.7133 16 6 3.6407 -6.2660 -2.8600 17 6 2.3411 -6.6741 -2.1426 18 6 3.1583 -6.6944 -0.8401 19 6 6.8021 -6.4990 -2.2072 20 6 7.4454 -7.8772 -1.9797 21 6 8.8035 -7.1941 -2.2228 22 6 8.1400 -5.8856 -1.7617 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6799 -0.8912 26 1 5.8159 -2.1710 0.8866 27 1 5.8145 -2.1700 -0.8934 28 1 6.8899 -4.2194 0.0848 29 1 5.3319 -4.6355 0.8383 30 1 5.7952 -4.3082 -2.0551 31 1 5.9102 -6.5148 -0.2463 32 1 4.5871 -8.0163 -1.8921 33 1 3.7981 -5.1882 -2.8988 34 1 3.7768 -6.7497 -3.8273 35 1 1.9692 -7.6546 -2.4400 36 1 1.5691 -5.9049 -2.1618 37 1 2.9057 -7.5233 -0.1789 38 1 3.1836 -5.7339 -0.3255 39 1 6.5557 -6.2990 -3.2500 40 1 7.3220 -8.2545 -0.9644 41 1 7.1830 -8.6125 -2.7403 42 1 9.1049 -7.1853 -3.2702 43 1 9.5943 -7.5406 -1.5576 44 1 8.4377 -5.0154 -2.3468 45 1 8.2069 -5.7174 -0.6869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325007958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:04 Heat of formation + Delta-G solvation = -33.071723 kcal Electronic energy + Delta-G solvation = -21149.211295 eV Core-core repulsion = 18166.906613 eV Total energy + Delta-G solvation = -2982.304683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88113 -38.70087 -38.65109 -35.91957 -34.75766 -31.50298 -29.81878 -27.65371 -26.43409 -26.29670 -25.48358 -23.93925 -22.93614 -22.22738 -20.19268 -19.81805 -19.03075 -17.53531 -17.06838 -16.74993 -16.55557 -16.21628 -16.05629 -15.71833 -14.99022 -14.81157 -14.46042 -14.38103 -13.85814 -13.34055 -13.29199 -13.18807 -13.09674 -12.96831 -12.80988 -12.74657 -12.38432 -12.25536 -12.03395 -11.81668 -11.54176 -11.38998 -11.30327 -11.20127 -11.08807 -10.90756 -10.82480 -10.69480 -10.26586 -8.98361 -8.35708 -6.42947 1.32475 1.36014 1.46810 2.29992 2.96750 3.15365 3.26667 3.63029 3.76666 3.89340 4.00176 4.01798 4.04307 4.18049 4.20172 4.28546 4.31644 4.52245 4.56573 4.59806 4.65299 4.72783 4.82598 4.90319 4.90826 4.92782 4.98405 5.02736 5.03495 5.07152 5.10785 5.14620 5.19079 5.20591 5.32311 5.40447 5.46896 5.57196 5.65495 5.88892 5.97879 6.32388 6.61282 6.65022 6.85519 7.21903 8.81806 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.004423 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.195412 B = 6328.549020 C = 7231.009336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.541 4.541 8 H 0.027 0.973 9 C 0.180 3.820 10 O -0.391 6.391 11 C 0.052 3.948 12 C 0.076 3.924 13 N -0.683 5.683 14 C 0.113 3.887 15 C -0.086 4.086 16 C -0.121 4.121 17 C -0.149 4.149 18 C -0.133 4.133 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.141 4.141 23 H 0.272 0.728 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.342 0.658 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.611 -14.491 -4.819 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.578 4.578 8 H 0.045 0.955 9 C 0.104 3.896 10 O -0.310 6.310 11 C -0.025 4.025 12 C -0.053 4.053 13 N -0.314 5.314 14 C 0.004 3.996 15 C -0.105 4.105 16 C -0.158 4.158 17 C -0.186 4.186 18 C -0.171 4.171 19 C -0.144 4.144 20 C -0.167 4.167 21 C -0.174 4.174 22 C -0.178 4.178 23 H 0.081 0.919 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.675 -14.606 -4.591 24.149 hybrid contribution 0.513 1.060 0.011 1.178 sum 19.188 -13.546 -4.580 23.930 Atomic orbital electron populations 1.70043 1.08294 1.28685 1.51375 1.25852 0.95786 1.03402 0.93555 0.85594 0.79394 0.77497 0.79728 1.18440 1.19821 1.16957 1.21163 0.91103 0.93651 1.51917 0.95499 1.20258 0.93178 0.81616 0.94561 1.87980 1.20828 1.27134 1.95066 1.22683 0.82328 0.97627 0.99854 1.21939 0.97903 0.92308 0.93128 1.60247 1.64226 1.03020 1.03894 1.21382 0.92929 0.87325 0.98008 1.22492 0.92995 0.98823 0.96153 1.22735 0.95229 1.01052 0.96827 1.22832 0.96985 1.00814 0.97999 1.22761 0.97237 1.00852 0.96221 1.23062 0.93495 0.97998 0.99889 1.22899 0.95864 0.95774 1.02141 1.22805 0.96760 0.96094 1.01748 1.22959 0.96013 0.97805 1.01051 0.91877 0.97460 0.97582 0.93046 0.93497 0.91501 0.91913 0.83959 0.91701 0.88237 0.90695 0.91528 0.89356 0.94484 0.92201 0.92048 0.89173 0.90085 0.91018 0.89856 0.91105 0.91650 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.83 13.96 21.45 0.30 -60.53 16 2 C 0.01 0.70 5.47 84.66 0.46 1.17 16 3 Si 0.96 44.33 27.47 68.60 1.88 46.22 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 7 C -0.54 -33.94 9.99 25.60 0.26 -33.68 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.18 9.28 4.76 71.24 0.34 9.62 16 10 O -0.39 -18.57 10.27 -148.98 -1.53 -20.10 16 11 C 0.05 1.75 6.25 71.98 0.45 2.20 16 12 C 0.08 2.04 5.80 86.30 0.50 2.54 16 13 N -0.68 -18.00 4.09 -491.57 -2.01 -20.01 16 14 C 0.11 2.40 1.89 44.91 0.09 2.49 16 15 C -0.09 -1.98 3.52 -10.27 -0.04 -2.02 16 16 C -0.12 -3.19 7.47 31.18 0.23 -2.96 16 17 C -0.15 -4.34 8.09 31.18 0.25 -4.09 16 18 C -0.13 -3.93 7.53 31.12 0.23 -3.70 16 19 C -0.12 -2.04 2.83 -10.27 -0.03 -2.06 16 20 C -0.13 -1.75 7.49 31.18 0.23 -1.52 16 21 C -0.14 -1.73 8.09 31.18 0.25 -1.48 16 22 C -0.14 -2.08 7.22 31.12 0.22 -1.85 16 23 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 24 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 25 H 0.01 0.32 7.57 -2.38 -0.02 0.30 16 26 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.36 6.96 -2.39 -0.02 1.34 16 29 H 0.06 1.86 8.04 -2.38 -0.02 1.84 16 30 H 0.34 8.44 8.18 -89.69 -0.73 7.70 16 31 H 0.06 1.41 7.44 -2.39 -0.02 1.39 16 32 H 0.10 1.92 8.04 -2.39 -0.02 1.91 16 33 H 0.07 2.37 6.92 -2.39 -0.02 2.35 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.06 2.30 7.65 -2.39 -0.02 2.29 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.10 8.04 -2.38 -0.02 1.08 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 1.17 7.20 -2.39 -0.02 1.16 16 Total: -1.00 -70.56 352.12 2.24 -68.31 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.14 Total: 21.45 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.46 Total: -35.35 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.71 Total: -80.54 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.53 Total: -20.10 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Total: -70.56 2.24 -68.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325007958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.242 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds