Wall clock time and date at job start Mon Mar 30 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.46983 * 2 1 4 4 C 1.46908 * 111.00023 * 305.76931 * 3 2 1 5 5 C 1.52997 * 109.47027 * 293.95338 * 4 3 2 6 6 C 1.46901 * 111.00320 * 69.72389 * 3 2 1 7 7 C 1.50701 * 109.47009 * 75.43321 * 6 3 2 8 8 N 1.29953 * 126.28536 * 83.99750 * 7 6 3 9 9 O 1.21294 * 110.24870 * 179.97438 * 8 7 6 10 10 C 1.33642 * 109.81337 * 359.97438 * 9 8 7 11 11 C 1.50709 * 126.54842 * 179.97438 * 10 9 8 12 12 C 1.52989 * 109.47432 * 270.02707 * 11 10 9 13 13 H 1.09006 * 109.47241 * 305.00533 * 12 11 10 14 14 C 1.53003 * 109.47355 * 65.00216 * 12 11 10 15 15 C 1.50700 * 109.47127 * 185.00188 * 12 11 10 16 16 H 1.07991 * 120.00133 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99988 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99904 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99997 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47334 * 60.00319 * 19 17 15 21 21 H 1.48502 * 109.47129 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47168 * 300.00330 * 19 17 15 23 23 N 1.31123 * 106.89851 * 359.76805 * 10 9 8 24 24 H 1.09005 * 109.47270 * 305.15699 * 1 2 3 25 25 H 1.09001 * 109.47235 * 65.15918 * 1 2 3 26 26 H 1.09000 * 109.46880 * 185.15741 * 1 2 3 27 27 H 1.09000 * 109.47544 * 240.00195 * 2 1 3 28 28 H 1.09000 * 109.47322 * 119.99984 * 2 1 3 29 29 H 1.09002 * 109.46811 * 53.95719 * 4 3 2 30 30 H 1.09003 * 109.46671 * 173.95426 * 4 3 2 31 31 H 1.08995 * 109.47262 * 299.99901 * 5 4 3 32 32 H 1.09003 * 109.47142 * 59.99965 * 5 4 3 33 33 H 1.09003 * 109.46840 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47372 * 195.43509 * 6 3 2 35 35 H 1.09005 * 109.46875 * 315.43955 * 6 3 2 36 36 H 1.08998 * 109.47168 * 30.03420 * 11 10 9 37 37 H 1.09004 * 109.46351 * 150.02457 * 11 10 9 38 38 H 1.08996 * 109.47373 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47074 * 299.99903 * 14 12 11 40 40 H 1.08998 * 109.46695 * 59.99676 * 14 12 11 41 41 H 0.97005 * 119.99623 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4392 2.1486 -1.1128 5 6 1.9483 1.5826 -2.4399 6 6 1.7470 2.0398 1.2864 7 6 2.7169 1.5341 2.3230 8 7 3.9219 1.9750 2.5287 9 8 4.4449 1.3605 3.4343 10 6 3.5974 0.4417 3.9070 11 6 3.8599 -0.5278 5.0307 12 6 4.4611 -1.8152 4.4635 13 1 3.8038 -2.2134 3.6905 14 6 5.8343 -1.5141 3.8597 15 6 4.6096 -2.8295 5.5682 16 1 4.3052 -2.5808 6.5740 17 6 5.1331 -4.0753 5.2944 18 7 5.5034 -4.3783 4.0694 19 14 5.3165 -5.3328 6.6636 20 1 3.9836 -5.6247 7.2494 21 1 5.9002 -6.5824 6.1131 22 1 6.2121 -4.7907 7.7169 23 7 2.4922 0.5479 3.2095 24 1 -0.3634 0.5918 0.8402 25 1 -0.3634 0.4317 -0.9326 26 1 -0.3633 -1.0235 0.0924 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.3524 2.0721 -1.0781 30 1 1.7328 3.1949 -1.0275 31 1 3.0350 1.6591 -2.4746 32 1 1.6548 0.5363 -2.5251 33 1 1.5173 2.1489 -3.2656 34 1 1.8619 3.1182 1.1768 35 1 0.7282 1.8130 1.6009 36 1 4.5579 -0.0822 5.7394 37 1 2.9232 -0.7572 5.5388 38 1 6.2629 -2.4314 3.4561 39 1 5.7270 -0.7805 3.0607 40 1 6.4916 -1.1158 4.6327 41 1 5.8721 -5.2546 3.8770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328275376.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:04 Heat of formation + Delta-G solvation = 59.024826 kcal Electronic energy + Delta-G solvation = -20790.548300 eV Core-core repulsion = 17708.696880 eV Total energy + Delta-G solvation = -3081.851420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.01917 -38.61425 -35.70831 -35.03517 -32.67724 -31.37523 -30.92206 -29.87927 -26.57262 -26.28893 -25.20137 -24.11012 -23.03368 -21.34542 -20.05268 -19.44615 -17.64290 -16.91754 -16.32707 -16.04740 -15.96498 -14.71041 -14.59750 -14.42653 -13.85887 -13.41577 -13.08036 -12.85272 -12.74531 -12.41122 -12.25571 -11.95981 -11.82547 -11.64316 -11.50150 -11.24884 -11.20884 -11.03422 -10.91304 -10.72141 -10.67007 -10.49308 -10.19919 -9.95131 -9.88010 -9.08144 -8.95384 -8.42700 -8.39572 -6.04483 -4.13028 1.71445 2.64184 3.30258 3.35357 3.36589 3.47341 3.79809 4.18145 4.38559 4.45405 4.82790 5.02251 5.04089 5.18641 5.22007 5.26925 5.34603 5.37351 5.44366 5.56258 5.70574 5.80500 5.89362 5.99694 6.02933 6.04951 6.18860 6.23692 6.28010 6.49584 6.58050 6.86397 6.88737 6.97751 7.06906 7.23415 7.64358 7.85823 8.05504 8.30660 8.71484 8.89282 9.52439 11.01601 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.004323 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.922167 B = 6474.956648 C = 6953.674007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.044 3.956 3 N -0.533 5.533 4 C 0.048 3.952 5 C -0.148 4.148 6 C 0.147 3.853 7 C 0.169 3.831 8 N -0.385 5.385 9 O 0.070 5.930 10 C 0.216 3.784 11 C -0.027 4.027 12 C 0.051 3.949 13 H 0.034 0.966 14 C -0.141 4.141 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.497 5.497 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.005 0.995 40 H 0.031 0.969 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 11.179 -7.614 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.084 4.084 3 N -0.258 5.258 4 C -0.079 4.079 5 C -0.206 4.206 6 C 0.018 3.982 7 C -0.105 4.105 8 N -0.095 5.095 9 O 0.013 5.987 10 C -0.003 4.003 11 C -0.066 4.066 12 C 0.032 3.968 13 H 0.052 0.948 14 C -0.198 4.198 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.231 5.231 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.024 0.976 40 H 0.050 0.950 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.757 11.584 -8.378 16.265 hybrid contribution -0.614 -0.851 0.869 1.363 sum -8.372 10.733 -7.509 15.546 Atomic orbital electron populations 1.22366 0.97992 1.02788 1.01482 1.22254 0.93060 0.89301 1.03773 1.62075 1.59283 1.02821 1.01577 1.22142 0.97278 0.97632 0.90867 1.21773 1.02256 1.01108 0.95445 1.20162 0.94113 0.98238 0.85729 1.25435 0.92618 0.93951 0.98449 1.74525 1.10531 1.18904 1.05570 1.85297 1.40394 1.37261 1.35791 1.29477 0.82856 0.90862 0.97138 1.20823 1.03469 0.92458 0.89819 1.18718 0.93361 0.88227 0.96501 0.94795 1.21878 0.99371 1.00860 0.97720 1.20990 1.42595 0.97492 0.94580 0.92204 1.24942 0.95107 0.98197 0.95525 1.69886 1.42186 1.21595 1.18797 0.86607 0.78452 0.80584 0.82060 1.20191 1.21307 1.20168 1.71895 1.24872 1.17972 1.08352 0.92440 0.92540 0.91700 0.90324 0.89750 0.94013 0.90879 0.91775 0.92501 0.92355 0.88780 0.91158 0.89314 0.88357 0.89590 0.97622 0.94975 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 9.10 37.15 0.34 -1.72 16 2 C 0.04 0.59 5.63 -3.83 -0.02 0.57 16 3 N -0.53 -7.05 4.63 -236.06 -1.09 -8.14 16 4 C 0.05 0.48 5.30 -3.82 -0.02 0.46 16 5 C -0.15 -1.37 9.83 37.16 0.37 -1.01 16 6 C 0.15 1.99 5.52 -4.97 -0.03 1.97 16 7 C 0.17 2.98 7.05 -156.37 -1.10 1.88 16 8 N -0.39 -7.32 12.16 30.90 0.38 -6.95 16 9 O 0.07 1.36 10.75 18.11 0.19 1.55 16 10 C 0.22 4.19 6.92 -13.06 -0.09 4.10 16 11 C -0.03 -0.52 5.25 -27.88 -0.15 -0.66 16 12 C 0.05 1.23 2.29 -91.78 -0.21 1.02 16 13 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.14 -3.35 8.78 37.16 0.33 -3.03 16 15 C -0.52 -13.45 8.56 -34.44 -0.29 -13.75 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -24.82 11.32 55.43 0.63 -24.20 16 19 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 N -0.50 -9.53 11.18 -9.87 -0.11 -9.64 16 24 H 0.06 0.64 6.28 -51.93 -0.33 0.32 16 25 H 0.06 0.53 6.51 -51.93 -0.34 0.19 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.01 6.75 -51.93 -0.35 0.66 16 28 H 0.08 1.41 7.12 -51.93 -0.37 1.04 16 29 H 0.04 0.38 5.98 -51.93 -0.31 0.06 16 30 H 0.07 0.67 7.83 -51.93 -0.41 0.27 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.54 6.68 -51.93 -0.35 0.19 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 1.11 7.74 -51.93 -0.40 0.70 16 35 H 0.07 0.88 6.10 -51.93 -0.32 0.56 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 38 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 39 H 0.00 0.11 6.93 -51.93 -0.36 -0.25 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -28.63 327.48 -7.41 -36.05 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.34 Total: -0.60 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.98 Total: -8.55 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.20 Total: -48.92 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.19 Total: 1.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.63 -7.41 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328275376.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.072 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds