Wall clock time and date at job start Mon Mar 30 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.46983 * 2 1 4 4 C 1.46908 * 111.00023 * 305.76931 * 3 2 1 5 5 C 1.52997 * 109.47027 * 293.95338 * 4 3 2 6 6 C 1.46901 * 111.00320 * 69.72389 * 3 2 1 7 7 C 1.50701 * 109.47009 * 75.43321 * 6 3 2 8 8 N 1.29953 * 126.28536 * 83.99750 * 7 6 3 9 9 O 1.21294 * 110.24870 * 179.97438 * 8 7 6 10 10 C 1.33642 * 109.81337 * 359.97438 * 9 8 7 11 11 C 1.50709 * 126.54842 * 179.97438 * 10 9 8 12 12 C 1.52989 * 109.47432 * 270.02707 * 11 10 9 13 13 H 1.09006 * 109.47241 * 305.00533 * 12 11 10 14 14 C 1.53003 * 109.47355 * 65.00216 * 12 11 10 15 15 C 1.50700 * 109.47127 * 185.00188 * 12 11 10 16 16 H 1.07991 * 120.00133 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99988 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99904 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99997 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47334 * 60.00319 * 19 17 15 21 21 H 1.48502 * 109.47129 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47168 * 300.00330 * 19 17 15 23 23 N 1.31123 * 106.89851 * 359.76805 * 10 9 8 24 24 H 1.09005 * 109.47270 * 305.15699 * 1 2 3 25 25 H 1.09001 * 109.47235 * 65.15918 * 1 2 3 26 26 H 1.09000 * 109.46880 * 185.15741 * 1 2 3 27 27 H 1.09000 * 109.47544 * 240.00195 * 2 1 3 28 28 H 1.09000 * 109.47322 * 119.99984 * 2 1 3 29 29 H 1.09002 * 109.46811 * 53.95719 * 4 3 2 30 30 H 1.09003 * 109.46671 * 173.95426 * 4 3 2 31 31 H 1.08995 * 109.47262 * 299.99901 * 5 4 3 32 32 H 1.09003 * 109.47142 * 59.99965 * 5 4 3 33 33 H 1.09003 * 109.46840 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47372 * 195.43509 * 6 3 2 35 35 H 1.09005 * 109.46875 * 315.43955 * 6 3 2 36 36 H 1.08998 * 109.47168 * 30.03420 * 11 10 9 37 37 H 1.09004 * 109.46351 * 150.02457 * 11 10 9 38 38 H 1.08996 * 109.47373 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47074 * 299.99903 * 14 12 11 40 40 H 1.08998 * 109.46695 * 59.99676 * 14 12 11 41 41 H 0.97005 * 119.99623 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4392 2.1486 -1.1128 5 6 1.9483 1.5826 -2.4399 6 6 1.7470 2.0398 1.2864 7 6 2.7169 1.5341 2.3230 8 7 3.9219 1.9750 2.5287 9 8 4.4449 1.3605 3.4343 10 6 3.5974 0.4417 3.9070 11 6 3.8599 -0.5278 5.0307 12 6 4.4611 -1.8152 4.4635 13 1 3.8038 -2.2134 3.6905 14 6 5.8343 -1.5141 3.8597 15 6 4.6096 -2.8295 5.5682 16 1 4.3052 -2.5808 6.5740 17 6 5.1331 -4.0753 5.2944 18 7 5.5034 -4.3783 4.0694 19 14 5.3165 -5.3328 6.6636 20 1 3.9836 -5.6247 7.2494 21 1 5.9002 -6.5824 6.1131 22 1 6.2121 -4.7907 7.7169 23 7 2.4922 0.5479 3.2095 24 1 -0.3634 0.5918 0.8402 25 1 -0.3634 0.4317 -0.9326 26 1 -0.3633 -1.0235 0.0924 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.3524 2.0721 -1.0781 30 1 1.7328 3.1949 -1.0275 31 1 3.0350 1.6591 -2.4746 32 1 1.6548 0.5363 -2.5251 33 1 1.5173 2.1489 -3.2656 34 1 1.8619 3.1182 1.1768 35 1 0.7282 1.8130 1.6009 36 1 4.5579 -0.0822 5.7394 37 1 2.9232 -0.7572 5.5388 38 1 6.2629 -2.4314 3.4561 39 1 5.7270 -0.7805 3.0607 40 1 6.4916 -1.1158 4.6327 41 1 5.8721 -5.2546 3.8770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328275376.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:03 Heat of formation + Delta-G solvation = 40.245519 kcal Electronic energy + Delta-G solvation = -20791.362632 eV Core-core repulsion = 17708.696880 eV Total energy + Delta-G solvation = -3082.665752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.48972 -39.60826 -37.43951 -36.54713 -34.38716 -32.64287 -32.16642 -31.06090 -28.29688 -27.39217 -27.19856 -25.04809 -24.50282 -22.77799 -21.51766 -20.74662 -19.15017 -18.45706 -18.12633 -17.06769 -16.97400 -16.55287 -15.93913 -15.58106 -15.13942 -15.11887 -14.66486 -13.94537 -13.85414 -13.56555 -13.45506 -13.28148 -13.15769 -12.98895 -12.82350 -12.75955 -12.58267 -12.47517 -12.36685 -12.15509 -12.02468 -12.00023 -11.73473 -11.70143 -11.55590 -10.94222 -10.68797 -10.43109 -9.38525 -8.07621 -6.22834 0.21644 1.22819 1.49183 1.50145 1.57412 1.95308 2.47630 2.63865 3.04896 3.10583 3.22184 3.95350 3.98880 4.02643 4.24107 4.29526 4.35622 4.38634 4.46879 4.50677 4.56271 4.64002 4.73414 4.78731 4.86254 4.93790 4.99499 5.06342 5.07175 5.10752 5.11733 5.20079 5.32618 5.39742 5.61333 5.85468 5.89855 6.05403 6.05589 6.29249 6.87946 7.23367 7.46664 8.98017 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.004323 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.922167 B = 6474.956648 C = 6953.674007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.047 3.953 3 N -0.551 5.551 4 C 0.048 3.952 5 C -0.146 4.146 6 C 0.147 3.853 7 C 0.174 3.826 8 N -0.399 5.399 9 O 0.060 5.940 10 C 0.210 3.790 11 C -0.015 4.015 12 C 0.052 3.948 13 H -0.005 1.005 14 C -0.128 4.128 15 C -0.530 4.530 16 H 0.072 0.928 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.959 3.041 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.266 1.266 23 N -0.508 5.508 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.008 0.992 40 H 0.043 0.957 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 12.249 -7.366 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.081 4.081 3 N -0.276 5.276 4 C -0.078 4.078 5 C -0.203 4.203 6 C 0.017 3.983 7 C -0.100 4.100 8 N -0.112 5.112 9 O 0.006 5.994 10 C -0.010 4.010 11 C -0.054 4.054 12 C 0.032 3.968 13 H 0.013 0.987 14 C -0.186 4.186 15 C -0.568 4.568 16 H 0.090 0.910 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.194 1.194 21 H -0.217 1.217 22 H -0.191 1.191 23 N -0.243 5.243 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.869 12.667 -8.116 17.464 hybrid contribution -0.286 -1.154 0.705 1.383 sum -9.155 11.512 -7.411 16.470 Atomic orbital electron populations 1.22278 0.95921 1.02951 1.02533 1.22128 0.94743 0.89443 1.01815 1.62045 1.60374 1.02937 1.02243 1.22258 0.98150 0.97726 0.89695 1.21766 1.01341 1.01262 0.95968 1.20378 0.93522 0.99272 0.85079 1.26189 0.92685 0.92763 0.98317 1.74514 1.11256 1.19556 1.05862 1.85273 1.40603 1.37450 1.36117 1.29420 0.83168 0.91141 0.97241 1.20617 1.04296 0.90523 0.89993 1.18574 0.92762 0.90159 0.95264 0.98696 1.21706 0.99476 0.99420 0.97991 1.21414 1.41931 0.97992 0.95486 0.90989 1.25774 0.94969 1.00313 0.97579 1.70046 1.43218 1.21903 1.20798 0.85586 0.78664 0.77915 0.79344 1.19445 1.21665 1.19136 1.71917 1.25101 1.18487 1.08781 0.92502 0.90405 0.91844 0.90242 0.93743 0.92323 0.89731 0.93352 0.92940 0.90065 0.86592 0.89936 0.87043 0.87251 0.92555 0.97284 0.93816 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 9.10 71.98 0.65 -2.98 16 2 C 0.05 1.23 5.63 86.30 0.49 1.72 16 3 N -0.55 -13.87 4.63 -900.77 -4.17 -18.04 16 4 C 0.05 0.84 5.30 86.30 0.46 1.30 16 5 C -0.15 -2.42 9.83 71.98 0.71 -1.71 16 6 C 0.15 3.75 5.52 85.56 0.47 4.22 16 7 C 0.17 6.04 7.05 138.46 0.98 7.02 16 8 N -0.40 -15.02 12.16 -60.33 -0.73 -15.75 16 9 O 0.06 2.31 10.75 74.85 0.80 3.12 16 10 C 0.21 8.11 6.92 88.38 0.61 8.72 16 11 C -0.02 -0.59 5.25 29.85 0.16 -0.43 16 12 C 0.05 2.53 2.29 -11.54 -0.03 2.50 16 13 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 14 C -0.13 -6.21 8.78 71.98 0.63 -5.58 16 15 C -0.53 -27.40 8.56 25.60 0.22 -27.18 16 16 H 0.07 3.47 7.74 -2.92 -0.02 3.45 16 17 C 0.01 0.67 5.30 84.66 0.45 1.11 16 18 N -0.92 -52.67 11.32 21.45 0.24 -52.42 16 19 Si 0.96 41.94 29.54 68.60 2.03 43.96 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 23 N -0.51 -19.45 11.18 -303.20 -3.39 -22.84 16 24 H 0.06 1.17 6.28 -2.38 -0.01 1.15 16 25 H 0.08 1.25 6.51 -2.39 -0.02 1.24 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.08 2.04 6.75 -2.39 -0.02 2.02 16 28 H 0.04 1.52 7.12 -2.39 -0.02 1.51 16 29 H 0.06 0.85 5.98 -2.39 -0.01 0.84 16 30 H 0.08 1.31 7.83 -2.39 -0.02 1.29 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.91 6.68 -2.39 -0.02 0.89 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 2.43 7.74 -2.39 -0.02 2.42 16 35 H 0.08 1.90 6.10 -2.38 -0.01 1.89 16 36 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 37 H 0.11 3.93 8.14 -2.38 -0.02 3.91 16 38 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 39 H 0.01 0.39 6.93 -2.39 -0.02 0.37 16 40 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -61.99 327.48 1.59 -60.40 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.02 Total: 12.86 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 5.80 Total: -11.29 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -8.05 Total: -109.06 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.80 Total: 3.12 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -61.99 1.59 -60.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328275376.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.650 kcal (2) G-P(sol) polarization free energy of solvation -61.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds