Wall clock time and date at job start Mon Mar 30 2020 06:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46895 * 109.47604 * 2 1 4 4 C 1.46901 * 111.00141 * 297.84101 * 3 2 1 5 5 C 1.52998 * 109.47344 * 288.32847 * 4 3 2 6 6 C 1.46900 * 111.00338 * 61.79755 * 3 2 1 7 7 C 1.50697 * 109.47021 * 66.04421 * 6 3 2 8 8 N 1.29947 * 126.28605 * 89.98244 * 7 6 3 9 9 O 1.21307 * 110.25270 * 180.02562 * 8 7 6 10 10 C 1.33641 * 109.80907 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.55096 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47154 * 270.02896 * 11 10 9 13 13 H 1.09001 * 109.47649 * 54.99644 * 12 11 10 14 14 C 1.53007 * 109.47385 * 294.99910 * 12 11 10 15 15 C 1.50697 * 109.47351 * 174.99887 * 12 11 10 16 16 H 1.08004 * 119.99758 * 359.97438 * 15 12 11 17 17 C 1.37881 * 120.00555 * 179.72361 * 15 12 11 18 18 N 1.31516 * 119.99673 * 0.27500 * 17 15 12 19 19 Si 1.86799 * 120.00116 * 180.27638 * 17 15 12 20 20 H 1.48499 * 109.47106 * 90.00056 * 19 17 15 21 21 H 1.48502 * 109.46667 * 210.00137 * 19 17 15 22 22 H 1.48503 * 109.47130 * 329.99854 * 19 17 15 23 23 N 1.31139 * 106.89850 * 0.22974 * 10 9 8 24 24 H 1.08999 * 109.47482 * 181.97105 * 1 2 3 25 25 H 1.09002 * 109.46927 * 301.96898 * 1 2 3 26 26 H 1.08999 * 109.46741 * 61.96426 * 1 2 3 27 27 H 1.09004 * 109.47364 * 239.99936 * 2 1 3 28 28 H 1.09006 * 109.47518 * 120.00163 * 2 1 3 29 29 H 1.09003 * 109.46721 * 48.32508 * 4 3 2 30 30 H 1.09000 * 109.47501 * 168.32114 * 4 3 2 31 31 H 1.08994 * 109.47166 * 299.99553 * 5 4 3 32 32 H 1.09004 * 109.46862 * 59.99681 * 5 4 3 33 33 H 1.09007 * 109.47260 * 179.97438 * 5 4 3 34 34 H 1.09009 * 109.46663 * 306.05197 * 6 3 2 35 35 H 1.09000 * 109.47366 * 186.05100 * 6 3 2 36 36 H 1.08994 * 109.47115 * 150.03007 * 11 10 9 37 37 H 1.09002 * 109.46801 * 30.02606 * 11 10 9 38 38 H 1.09002 * 109.46498 * 299.99875 * 14 12 11 39 39 H 1.09000 * 109.46963 * 60.00104 * 14 12 11 40 40 H 1.09002 * 109.47264 * 180.02562 * 14 12 11 41 41 H 0.96997 * 119.99582 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5914 2.0948 -1.2127 5 6 2.3715 1.5637 -2.4170 6 6 1.5843 2.0974 1.2086 7 6 2.2425 1.4843 2.4177 8 7 3.3827 1.8347 2.9331 9 8 3.6349 1.1479 3.9008 10 6 2.6492 0.2679 4.1008 11 6 2.5767 -0.7648 5.1959 12 6 3.2279 -2.0635 4.7162 13 1 4.2440 -1.8578 4.3794 14 6 2.4146 -2.6443 3.5576 15 6 3.2658 -3.0553 5.8502 16 1 2.8657 -2.7860 6.8166 17 6 3.8064 -4.3082 5.6526 18 7 4.2940 -4.6359 4.4760 19 14 3.8462 -5.5402 7.0562 20 1 2.6002 -6.3479 7.0414 21 1 5.0192 -6.4365 6.8949 22 1 3.9511 -4.8154 8.3482 23 7 1.7599 0.4710 3.1587 24 1 -0.3634 -1.0270 0.0353 25 1 -0.3633 0.5441 0.8718 26 1 -0.3633 0.4830 -0.9071 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5251 1.9334 -1.3706 30 1 1.7841 3.1613 -1.0966 31 1 3.4378 1.7251 -2.2591 32 1 2.1786 0.4971 -2.5330 33 1 2.0533 2.0901 -3.3169 34 1 0.5013 2.0195 1.3058 35 1 1.8678 3.1472 1.1336 36 1 1.5334 -0.9534 5.4489 37 1 3.1037 -0.3979 6.0767 38 1 1.3985 -2.8502 3.8944 39 1 2.3873 -1.9270 2.7374 40 1 2.8783 -3.5698 3.2162 41 1 4.6746 -5.5172 4.3371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328275379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:06 Heat of formation + Delta-G solvation = 61.124771 kcal Electronic energy + Delta-G solvation = -20966.898123 eV Core-core repulsion = 17885.137764 eV Total energy + Delta-G solvation = -3081.760360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.03872 -38.58794 -35.78891 -34.93155 -32.67414 -31.46581 -30.83970 -29.81292 -26.63563 -26.27734 -25.17267 -24.04731 -22.95425 -21.48342 -20.13548 -19.29520 -17.66400 -16.82604 -16.36281 -16.05592 -15.92410 -14.67483 -14.58599 -14.41695 -14.03631 -13.21412 -13.16671 -12.89316 -12.57864 -12.38473 -12.23703 -12.00009 -11.90124 -11.61096 -11.49389 -11.36266 -11.10175 -11.00617 -10.84812 -10.65973 -10.56592 -10.48700 -10.16437 -9.97170 -9.87793 -9.09851 -8.92654 -8.39983 -8.39551 -6.04753 -4.13283 1.69384 2.63201 3.28603 3.35535 3.37412 3.45371 3.82310 4.15378 4.37844 4.44474 4.83334 5.05021 5.09415 5.19932 5.26733 5.28059 5.37377 5.41313 5.52462 5.57906 5.70177 5.80965 5.94648 6.02119 6.05041 6.13440 6.16311 6.25040 6.32874 6.49285 6.58347 6.89976 6.92822 6.99777 7.14982 7.26177 7.64587 7.85617 8.06745 8.31102 8.69412 8.89127 9.52262 11.01221 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.004452 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.496206 B = 6287.149452 C = 6820.445926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.047 3.953 5 C -0.147 4.147 6 C 0.147 3.853 7 C 0.168 3.832 8 N -0.386 5.386 9 O 0.067 5.933 10 C 0.214 3.786 11 C -0.026 4.026 12 C 0.050 3.950 13 H 0.031 0.969 14 C -0.135 4.135 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.490 5.490 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.028 0.972 39 H 0.010 0.990 40 H 0.082 0.918 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 11.477 -8.668 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.080 4.080 5 C -0.204 4.204 6 C 0.018 3.982 7 C -0.105 4.105 8 N -0.096 5.096 9 O 0.011 5.989 10 C -0.005 4.005 11 C -0.065 4.065 12 C 0.031 3.969 13 H 0.049 0.951 14 C -0.193 4.193 15 C -0.556 4.556 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.524 5.524 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.224 5.224 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.029 0.971 40 H 0.100 0.900 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.875 11.903 -9.318 16.218 hybrid contribution -0.778 -0.874 0.782 1.407 sum -6.653 11.028 -8.536 15.452 Atomic orbital electron populations 1.22337 0.97918 1.02869 1.01403 1.22252 0.93276 0.89142 1.03639 1.62175 1.59881 1.02869 1.00810 1.22125 0.97882 0.98146 0.89875 1.21758 1.01209 1.01251 0.96204 1.20196 0.97226 0.96832 0.83994 1.25425 0.90885 0.94499 0.99721 1.74538 1.17347 1.16921 1.00824 1.85283 1.42398 1.35938 1.35328 1.29511 0.81979 0.91888 0.97103 1.20815 1.04277 0.90969 0.90476 1.18721 0.94865 0.88137 0.95221 0.95061 1.21814 0.98783 1.01802 0.96919 1.21032 1.40243 0.97930 0.96387 0.92176 1.24944 0.94980 0.98198 0.95674 1.69899 1.39680 1.20966 1.21885 0.86551 0.77566 0.81150 0.82477 1.20663 1.21237 1.19784 1.71941 1.29002 1.15411 1.06027 0.91715 0.92015 0.92929 0.90578 0.89605 0.93937 0.90962 0.91840 0.92555 0.92403 0.91353 0.88725 0.88444 0.89249 0.95284 0.97066 0.89956 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 9.28 37.16 0.34 -1.88 16 2 C 0.04 0.62 5.74 -3.83 -0.02 0.60 16 3 N -0.53 -7.06 4.66 -236.07 -1.10 -8.16 16 4 C 0.05 0.47 5.55 -3.82 -0.02 0.45 16 5 C -0.15 -1.37 9.95 37.16 0.37 -1.00 16 6 C 0.15 1.98 5.37 -4.98 -0.03 1.95 16 7 C 0.17 2.91 6.83 -156.37 -1.07 1.84 16 8 N -0.39 -7.24 12.16 30.90 0.38 -6.87 16 9 O 0.07 1.30 11.31 18.10 0.20 1.50 16 10 C 0.21 4.08 6.98 -13.05 -0.09 3.99 16 11 C -0.03 -0.50 5.26 -27.88 -0.15 -0.65 16 12 C 0.05 1.19 2.29 -91.77 -0.21 0.98 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.14 -3.23 8.78 37.16 0.33 -2.90 16 15 C -0.52 -13.38 8.56 -34.44 -0.29 -13.68 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.78 11.31 55.43 0.63 -24.15 16 19 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 N -0.49 -9.10 10.10 -9.86 -0.10 -9.20 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.78 6.22 -51.93 -0.32 0.46 16 26 H 0.05 0.53 6.32 -51.93 -0.33 0.21 16 27 H 0.08 0.99 6.61 -51.93 -0.34 0.65 16 28 H 0.09 1.49 6.55 -51.93 -0.34 1.15 16 29 H 0.04 0.39 5.89 -51.93 -0.31 0.09 16 30 H 0.07 0.65 7.82 -51.93 -0.41 0.24 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.85 6.02 -51.92 -0.31 0.53 16 35 H 0.09 1.12 7.86 -51.93 -0.41 0.71 16 36 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.01 0.24 6.75 -51.93 -0.35 -0.11 16 40 H 0.08 2.18 6.06 -51.93 -0.31 1.87 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -28.29 326.13 -7.31 -35.61 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.28 Total: -0.47 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.93 Total: -8.69 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.20 Total: -48.37 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.20 Total: 1.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.29 -7.31 -35.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328275379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.732 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds