Wall clock time and date at job start Mon Mar 30 2020 06:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46895 * 109.47604 * 2 1 4 4 C 1.46901 * 111.00141 * 297.84101 * 3 2 1 5 5 C 1.52998 * 109.47344 * 288.32847 * 4 3 2 6 6 C 1.46900 * 111.00338 * 61.79755 * 3 2 1 7 7 C 1.50697 * 109.47021 * 66.04421 * 6 3 2 8 8 N 1.29947 * 126.28605 * 89.98244 * 7 6 3 9 9 O 1.21307 * 110.25270 * 180.02562 * 8 7 6 10 10 C 1.33641 * 109.80907 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.55096 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47154 * 270.02896 * 11 10 9 13 13 H 1.09001 * 109.47649 * 54.99644 * 12 11 10 14 14 C 1.53007 * 109.47385 * 294.99910 * 12 11 10 15 15 C 1.50697 * 109.47351 * 174.99887 * 12 11 10 16 16 H 1.08004 * 119.99758 * 359.97438 * 15 12 11 17 17 C 1.37881 * 120.00555 * 179.72361 * 15 12 11 18 18 N 1.31516 * 119.99673 * 0.27500 * 17 15 12 19 19 Si 1.86799 * 120.00116 * 180.27638 * 17 15 12 20 20 H 1.48499 * 109.47106 * 90.00056 * 19 17 15 21 21 H 1.48502 * 109.46667 * 210.00137 * 19 17 15 22 22 H 1.48503 * 109.47130 * 329.99854 * 19 17 15 23 23 N 1.31139 * 106.89850 * 0.22974 * 10 9 8 24 24 H 1.08999 * 109.47482 * 181.97105 * 1 2 3 25 25 H 1.09002 * 109.46927 * 301.96898 * 1 2 3 26 26 H 1.08999 * 109.46741 * 61.96426 * 1 2 3 27 27 H 1.09004 * 109.47364 * 239.99936 * 2 1 3 28 28 H 1.09006 * 109.47518 * 120.00163 * 2 1 3 29 29 H 1.09003 * 109.46721 * 48.32508 * 4 3 2 30 30 H 1.09000 * 109.47501 * 168.32114 * 4 3 2 31 31 H 1.08994 * 109.47166 * 299.99553 * 5 4 3 32 32 H 1.09004 * 109.46862 * 59.99681 * 5 4 3 33 33 H 1.09007 * 109.47260 * 179.97438 * 5 4 3 34 34 H 1.09009 * 109.46663 * 306.05197 * 6 3 2 35 35 H 1.09000 * 109.47366 * 186.05100 * 6 3 2 36 36 H 1.08994 * 109.47115 * 150.03007 * 11 10 9 37 37 H 1.09002 * 109.46801 * 30.02606 * 11 10 9 38 38 H 1.09002 * 109.46498 * 299.99875 * 14 12 11 39 39 H 1.09000 * 109.46963 * 60.00104 * 14 12 11 40 40 H 1.09002 * 109.47264 * 180.02562 * 14 12 11 41 41 H 0.96997 * 119.99582 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5914 2.0948 -1.2127 5 6 2.3715 1.5637 -2.4170 6 6 1.5843 2.0974 1.2086 7 6 2.2425 1.4843 2.4177 8 7 3.3827 1.8347 2.9331 9 8 3.6349 1.1479 3.9008 10 6 2.6492 0.2679 4.1008 11 6 2.5767 -0.7648 5.1959 12 6 3.2279 -2.0635 4.7162 13 1 4.2440 -1.8578 4.3794 14 6 2.4146 -2.6443 3.5576 15 6 3.2658 -3.0553 5.8502 16 1 2.8657 -2.7860 6.8166 17 6 3.8064 -4.3082 5.6526 18 7 4.2940 -4.6359 4.4760 19 14 3.8462 -5.5402 7.0562 20 1 2.6002 -6.3479 7.0414 21 1 5.0192 -6.4365 6.8949 22 1 3.9511 -4.8154 8.3482 23 7 1.7599 0.4710 3.1587 24 1 -0.3634 -1.0270 0.0353 25 1 -0.3633 0.5441 0.8718 26 1 -0.3633 0.4830 -0.9071 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5251 1.9334 -1.3706 30 1 1.7841 3.1613 -1.0966 31 1 3.4378 1.7251 -2.2591 32 1 2.1786 0.4971 -2.5330 33 1 2.0533 2.0901 -3.3169 34 1 0.5013 2.0195 1.3058 35 1 1.8678 3.1472 1.1336 36 1 1.5334 -0.9534 5.4489 37 1 3.1037 -0.3979 6.0767 38 1 1.3985 -2.8502 3.8944 39 1 2.3873 -1.9270 2.7374 40 1 2.8783 -3.5698 3.2162 41 1 4.6746 -5.5172 4.3371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328275379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:06 Heat of formation + Delta-G solvation = 42.959896 kcal Electronic energy + Delta-G solvation = -20967.685811 eV Core-core repulsion = 17885.137764 eV Total energy + Delta-G solvation = -3082.548048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.48526 -39.59984 -37.49298 -36.43108 -34.37565 -32.58972 -32.27459 -30.97323 -28.30929 -27.39660 -27.18728 -25.02549 -24.37189 -22.95327 -21.50351 -20.65275 -19.14701 -18.38651 -18.13312 -17.08209 -16.94399 -16.55945 -15.92763 -15.75000 -15.17525 -14.86564 -14.50870 -14.06807 -13.90582 -13.74413 -13.40363 -13.23066 -13.09763 -12.95450 -12.84325 -12.78360 -12.48874 -12.41862 -12.37797 -12.15531 -11.98395 -11.94291 -11.73285 -11.70686 -11.50294 -10.90917 -10.68335 -10.43298 -9.36523 -8.07541 -6.22493 0.21855 1.24039 1.48048 1.49158 1.58876 1.95867 2.47430 2.66029 3.03448 3.10564 3.22373 3.95802 3.98720 4.06646 4.26646 4.31519 4.36243 4.39739 4.48538 4.51588 4.58645 4.65460 4.75057 4.79207 4.87956 4.97657 5.02919 5.06534 5.07656 5.12168 5.20599 5.24242 5.35845 5.41303 5.62129 5.85881 5.90698 6.05601 6.07177 6.30186 6.88444 7.23419 7.46933 8.98158 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.004452 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.496206 B = 6287.149452 C = 6820.445926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.048 3.952 3 N -0.548 5.548 4 C 0.047 3.953 5 C -0.144 4.144 6 C 0.146 3.854 7 C 0.174 3.826 8 N -0.401 5.401 9 O 0.055 5.945 10 C 0.208 3.792 11 C -0.015 4.015 12 C 0.049 3.951 13 H -0.003 1.003 14 C -0.119 4.119 15 C -0.529 4.529 16 H 0.072 0.928 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.959 3.041 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.261 1.261 23 N -0.495 5.495 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.032 0.968 39 H 0.015 0.985 40 H 0.052 0.948 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 12.538 -8.751 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.080 4.080 3 N -0.274 5.274 4 C -0.079 4.079 5 C -0.202 4.202 6 C 0.017 3.983 7 C -0.099 4.099 8 N -0.114 5.114 9 O 0.001 5.999 10 C -0.012 4.012 11 C -0.053 4.053 12 C 0.029 3.971 13 H 0.015 0.985 14 C -0.177 4.177 15 C -0.567 4.567 16 H 0.090 0.910 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.185 1.185 23 N -0.229 5.229 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.051 0.949 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.242 12.975 -9.385 17.575 hybrid contribution -0.344 -1.163 0.717 1.409 sum -7.587 11.812 -8.667 16.499 Atomic orbital electron populations 1.22246 0.96275 1.02835 1.02229 1.22111 0.94572 0.89531 1.01790 1.62155 1.60627 1.02753 1.01854 1.22243 0.98706 0.98588 0.88391 1.21753 1.00332 1.01133 0.96977 1.20418 0.97683 0.97450 0.82717 1.26142 0.90223 0.93495 1.00079 1.74532 1.18224 1.17551 1.01124 1.85261 1.42616 1.36235 1.35781 1.29443 0.82269 0.92179 0.97287 1.20592 1.04824 0.88912 0.91019 1.18602 0.93452 0.90244 0.94790 0.98489 1.21606 0.98527 1.00423 0.97175 1.21450 1.39603 0.98320 0.97283 0.91024 1.25770 0.94818 1.00234 0.97853 1.70054 1.40757 1.21300 1.23865 0.85538 0.77312 0.78761 0.79940 1.20242 1.21594 1.18540 1.71957 1.29184 1.15785 1.05997 0.92125 0.92621 0.90609 0.90199 0.93672 0.92494 0.89466 0.93219 0.93260 0.90114 0.89897 0.86743 0.87060 0.87362 0.94860 0.96593 0.92960 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 9.28 71.98 0.67 -3.26 16 2 C 0.05 1.29 5.74 86.30 0.50 1.79 16 3 N -0.55 -13.69 4.66 -900.79 -4.20 -17.89 16 4 C 0.05 0.82 5.55 86.30 0.48 1.30 16 5 C -0.14 -2.41 9.95 71.98 0.72 -1.69 16 6 C 0.15 3.67 5.37 85.56 0.46 4.13 16 7 C 0.17 5.89 6.83 138.46 0.95 6.84 16 8 N -0.40 -14.94 12.16 -60.29 -0.73 -15.67 16 9 O 0.05 2.11 11.31 74.84 0.85 2.96 16 10 C 0.21 7.87 6.98 88.38 0.62 8.49 16 11 C -0.01 -0.55 5.26 29.85 0.16 -0.40 16 12 C 0.05 2.35 2.29 -11.54 -0.03 2.32 16 13 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 14 C -0.12 -5.81 8.78 71.98 0.63 -5.18 16 15 C -0.53 -27.21 8.56 25.60 0.22 -26.99 16 16 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 17 C 0.01 0.64 5.30 84.66 0.45 1.09 16 18 N -0.92 -52.60 11.31 21.45 0.24 -52.35 16 19 Si 0.96 41.95 29.54 68.60 2.03 43.97 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 N -0.49 -18.15 10.10 -303.16 -3.06 -21.21 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.30 6.22 -2.39 -0.01 1.28 16 26 H 0.08 1.32 6.32 -2.39 -0.02 1.30 16 27 H 0.08 2.05 6.61 -2.39 -0.02 2.03 16 28 H 0.04 1.59 6.55 -2.38 -0.02 1.57 16 29 H 0.06 0.85 5.89 -2.39 -0.01 0.83 16 30 H 0.09 1.28 7.82 -2.39 -0.02 1.26 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.88 6.71 -2.38 -0.02 0.87 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 1.85 6.02 -2.38 -0.01 1.83 16 35 H 0.11 2.41 7.86 -2.39 -0.02 2.39 16 36 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 37 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 38 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.02 0.71 6.75 -2.39 -0.02 0.70 16 40 H 0.05 2.85 6.06 -2.39 -0.01 2.84 16 41 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -61.13 326.13 1.95 -59.18 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.02 Total: 12.57 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 5.81 Total: -11.56 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -7.75 Total: -107.13 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.85 Total: 2.96 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -61.13 1.95 -59.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328275379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.142 kcal (2) G-P(sol) polarization free energy of solvation -61.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds