Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47607 * 2 1 4 4 C 1.36940 * 119.99660 * 83.35024 * 3 2 1 5 5 H 1.07997 * 119.99604 * 167.80202 * 4 3 2 6 6 C 1.38815 * 120.00097 * 347.79779 * 4 3 2 7 7 N 1.31619 * 120.00008 * 9.95053 * 6 4 3 8 8 Si 1.86802 * 119.99692 * 189.95602 * 6 4 3 9 9 H 1.48500 * 109.47142 * 59.99689 * 8 6 4 10 10 H 1.48502 * 109.46869 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46809 * 299.99478 * 8 6 4 12 12 C 1.46494 * 119.99904 * 263.35319 * 3 2 1 13 13 H 1.09001 * 109.46975 * 175.63637 * 12 3 2 14 14 C 1.52994 * 109.47413 * 55.63444 * 12 3 2 15 15 C 1.50707 * 109.47056 * 295.63267 * 12 3 2 16 16 N 1.31129 * 126.55007 * 230.19388 * 15 12 3 17 17 C 1.34498 * 105.61093 * 179.97438 * 16 15 12 18 18 C 1.50705 * 126.28524 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47297 * 59.99480 * 18 17 16 20 20 C 1.53000 * 109.46988 * 179.97438 * 18 17 16 21 21 C 1.52998 * 109.46810 * 299.99567 * 18 17 16 22 22 N 1.29946 * 107.42643 * 359.97438 * 17 16 15 23 23 O 1.21306 * 110.24944 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.47003 * 308.44146 * 1 2 3 25 25 H 1.08998 * 109.46499 * 68.43269 * 1 2 3 26 26 H 1.08997 * 109.47540 * 188.43720 * 1 2 3 27 27 H 1.09003 * 109.47316 * 239.99801 * 2 1 3 28 28 H 1.09002 * 109.46859 * 120.00234 * 2 1 3 29 29 H 0.96997 * 119.99832 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47317 * 60.00010 * 14 12 3 31 31 H 1.09000 * 109.47142 * 179.97438 * 14 12 3 32 32 H 1.09001 * 109.47208 * 300.00051 * 14 12 3 33 33 H 1.09002 * 109.46650 * 59.99904 * 19 18 17 34 34 H 1.08992 * 109.46848 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47469 * 300.00462 * 19 18 17 36 36 H 1.09007 * 109.46952 * 60.00003 * 20 18 17 37 37 H 1.09002 * 109.46954 * 179.97438 * 20 18 17 38 38 H 1.08997 * 109.47192 * 299.99708 * 20 18 17 39 39 H 1.09007 * 109.47536 * 60.00420 * 21 18 17 40 40 H 1.09002 * 109.47213 * 180.02562 * 21 18 17 41 41 H 1.08999 * 109.47250 * 300.00259 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1172 2.0724 1.1780 5 1 2.6551 3.0083 1.2114 6 6 1.5259 1.5703 2.3291 7 7 1.0420 0.3463 2.3402 8 14 1.4170 2.6317 3.8625 9 1 0.6336 3.8568 3.5618 10 1 0.7461 1.8690 4.9457 11 1 2.7844 3.0130 4.2985 12 6 2.4011 2.0228 -1.2602 13 1 2.6627 3.0642 -1.0728 14 6 1.2287 1.9600 -2.2411 15 6 3.5880 1.3048 -1.8493 16 7 4.7008 1.8535 -2.2738 17 6 5.4632 0.8349 -2.7098 18 6 6.8465 0.9443 -3.2978 19 6 7.7878 1.5790 -2.2722 20 6 7.3571 -0.4509 -3.6632 21 6 6.7990 1.8158 -4.5544 22 7 4.7879 -0.2609 -2.5311 23 8 3.7078 -0.0128 -2.0379 24 1 -0.3633 0.6389 0.8049 25 1 -0.3632 0.3778 -0.9557 26 1 -0.3634 -1.0165 0.1508 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.6285 -0.0044 3.1445 30 1 0.3702 2.4793 -1.8150 31 1 1.5133 2.4378 -3.1785 32 1 0.9670 0.9185 -2.4284 33 1 7.8216 0.9581 -1.3769 34 1 8.7881 1.6585 -2.6976 35 1 7.4242 2.5729 -2.0114 36 1 6.6865 -0.9034 -4.3938 37 1 8.3574 -0.3717 -4.0889 38 1 7.3910 -1.0715 -2.7678 39 1 6.4354 2.8098 -4.2937 40 1 7.7994 1.8946 -4.9799 41 1 6.1283 1.3637 -5.2850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330673947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = 85.403765 kcal Electronic energy + Delta-G solvation = -21567.133628 eV Core-core repulsion = 18486.426084 eV Total energy + Delta-G solvation = -3080.707543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.87992 -37.49159 -36.90767 -34.40241 -32.80975 -30.76091 -29.69222 -28.60633 -27.33023 -27.29496 -24.45661 -23.99460 -23.21603 -21.74432 -20.37144 -18.79406 -17.37976 -17.06429 -16.42525 -15.33747 -14.94109 -14.68662 -14.16178 -13.89444 -13.79355 -13.28163 -12.44934 -12.41846 -12.26746 -12.14703 -11.95947 -11.80020 -11.70466 -11.43915 -11.40362 -11.28170 -11.06448 -10.96459 -10.79394 -10.71972 -10.65065 -10.50792 -10.31515 -10.02390 -9.72452 -9.48897 -9.26059 -8.46399 -7.10108 -5.72547 -3.28146 1.84279 2.82655 3.33896 3.40308 3.40738 3.60867 3.96341 4.33388 4.49505 4.89997 4.93477 5.09975 5.23196 5.39083 5.49663 5.57212 5.66268 5.73785 5.79263 5.83968 5.85018 5.85881 5.96612 6.04044 6.20228 6.25821 6.31006 6.37679 6.46960 6.59619 6.70857 6.74735 7.01156 7.10788 7.20419 7.58974 7.85587 8.04942 8.37628 8.83763 9.14156 9.69521 10.10719 11.16781 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.005475 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.351344 B = 5113.189936 C = 5515.248640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.156 3.844 3 N -0.578 5.578 4 C -0.260 4.260 5 H 0.078 0.922 6 C 0.004 3.996 7 N -0.898 5.898 8 Si 0.912 3.088 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.284 1.284 12 C 0.254 3.746 13 H 0.107 0.893 14 C -0.157 4.157 15 C 0.198 3.802 16 N -0.502 5.502 17 C 0.168 3.832 18 C 0.027 3.973 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.135 4.135 22 N -0.402 5.402 23 O 0.075 5.925 24 H 0.077 0.923 25 H 0.008 0.992 26 H 0.023 0.977 27 H 0.009 0.991 28 H 0.107 0.893 29 H 0.253 0.747 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 1.468 -10.649 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.032 3.968 3 N -0.297 5.297 4 C -0.388 4.388 5 H 0.095 0.905 6 C -0.193 4.193 7 N -0.544 5.544 8 Si 0.742 3.258 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.211 1.211 12 C 0.140 3.860 13 H 0.125 0.875 14 C -0.216 4.216 15 C -0.025 4.025 16 N -0.236 5.236 17 C -0.105 4.105 18 C 0.025 3.975 19 C -0.195 4.195 20 C -0.195 4.195 21 C -0.193 4.193 22 N -0.112 5.112 23 O 0.021 5.979 24 H 0.096 0.904 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.027 0.973 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.619 0.887 -10.722 13.183 hybrid contribution -0.238 0.446 0.964 1.088 sum 7.382 1.332 -9.757 12.307 Atomic orbital electron populations 1.22288 0.98673 0.99376 0.98764 1.21248 0.92917 0.83331 0.99329 1.44422 1.72751 1.12047 1.00493 1.19326 1.29413 1.03718 0.86359 0.90465 1.24872 0.99304 0.96766 0.98370 1.70194 1.43127 1.13711 1.27371 0.86211 0.77819 0.79620 0.82156 1.20906 1.21519 1.21063 1.19081 0.85377 0.94734 0.86837 0.87508 1.22342 0.98781 1.02604 0.97897 1.31363 0.98236 0.80748 0.92194 1.71792 1.02754 1.30728 1.18368 1.25574 0.99570 0.84557 1.00835 1.18861 0.85796 0.97359 0.95441 1.21831 0.98049 1.01555 0.98022 1.21804 1.00767 0.94691 1.02219 1.21823 1.01943 1.00006 0.95535 1.74519 0.95245 1.24473 1.17011 1.85342 1.27640 1.27860 1.57035 0.90430 0.97332 0.95784 0.97282 0.87515 0.93580 0.90657 0.93295 0.92116 0.92530 0.91686 0.91398 0.92160 0.91750 0.92049 0.91426 0.91673 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.03 37.16 0.34 -2.63 16 2 C 0.16 3.69 4.76 -4.04 -0.02 3.67 16 3 N -0.58 -13.62 2.43 -166.98 -0.41 -14.02 16 4 C -0.26 -6.67 9.72 -15.06 -0.15 -6.82 16 5 H 0.08 1.94 7.73 -52.49 -0.41 1.53 16 6 C 0.00 0.11 5.05 -17.43 -0.09 0.02 16 7 N -0.90 -23.98 7.57 55.49 0.42 -23.56 16 8 Si 0.91 20.87 29.57 -169.99 -5.03 15.85 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.25 5.06 3.24 -69.09 -0.22 4.84 16 13 H 0.11 2.08 7.82 -51.93 -0.41 1.67 16 14 C -0.16 -2.66 8.19 37.15 0.30 -2.36 16 15 C 0.20 4.01 7.15 -13.05 -0.09 3.92 16 16 N -0.50 -9.81 11.55 -9.86 -0.11 -9.92 16 17 C 0.17 3.05 6.40 -156.37 -1.00 2.05 16 18 C 0.03 0.38 0.99 -155.66 -0.15 0.22 16 19 C -0.14 -1.73 8.45 37.16 0.31 -1.41 16 20 C -0.14 -1.68 7.97 37.16 0.30 -1.38 16 21 C -0.13 -1.58 8.46 37.16 0.31 -1.26 16 22 N -0.40 -7.99 11.47 30.90 0.35 -7.63 16 23 O 0.08 1.59 9.34 18.11 0.17 1.75 16 24 H 0.08 1.95 6.17 -51.93 -0.32 1.63 16 25 H 0.01 0.16 6.41 -51.93 -0.33 -0.17 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.01 0.21 5.82 -51.93 -0.30 -0.10 16 28 H 0.11 2.88 5.85 -51.93 -0.30 2.58 16 29 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.06 6.55 -51.93 -0.34 0.72 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 325.03 15.07 4.90 4.90 Total: -1.00 -27.57 325.03 -6.49 -34.06 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.62 Total: -0.28 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.16 Total: -1.15 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.25 Total: -55.13 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.17 Total: 1.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.57 -6.49 -34.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330673947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.460 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds