Wall clock time and date at job start Mon Mar 30 2020 06:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46822 * 2 1 4 4 C 1.36943 * 120.00339 * 273.05644 * 3 2 1 5 5 H 1.07995 * 119.99998 * 194.35217 * 4 3 2 6 6 C 1.38810 * 119.99822 * 14.34989 * 4 3 2 7 7 N 1.31621 * 119.99618 * 356.02639 * 6 4 3 8 8 Si 1.86797 * 120.00019 * 176.29735 * 6 4 3 9 9 H 1.48502 * 109.46882 * 60.00417 * 8 6 4 10 10 H 1.48497 * 109.47128 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47199 * 300.00163 * 8 6 4 12 12 C 1.46508 * 119.99827 * 93.05765 * 3 2 1 13 13 H 1.08999 * 109.46862 * 186.32143 * 12 3 2 14 14 C 1.52999 * 109.47165 * 306.31731 * 12 3 2 15 15 C 1.50702 * 109.47096 * 66.32075 * 12 3 2 16 16 N 1.31125 * 126.54910 * 137.34332 * 15 12 3 17 17 C 1.34500 * 105.61406 * 179.91864 * 16 15 12 18 18 C 1.50695 * 126.28992 * 180.13169 * 17 16 15 19 19 C 1.52997 * 109.47360 * 180.23939 * 18 17 16 20 20 C 1.53000 * 109.47012 * 300.24000 * 18 17 16 21 21 C 1.53008 * 109.47159 * 60.23621 * 18 17 16 22 22 N 1.29948 * 107.42260 * 0.35272 * 17 16 15 23 23 O 1.21304 * 110.25101 * 359.78030 * 22 17 16 24 24 H 1.09003 * 109.47028 * 182.94661 * 1 2 3 25 25 H 1.09001 * 109.47075 * 302.94539 * 1 2 3 26 26 H 1.09000 * 109.47508 * 62.94235 * 1 2 3 27 27 H 1.09000 * 109.46992 * 240.00828 * 2 1 3 28 28 H 1.08998 * 109.46989 * 120.00022 * 2 1 3 29 29 H 0.97004 * 119.99500 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46610 * 59.99978 * 14 12 3 31 31 H 1.09000 * 109.46860 * 179.97438 * 14 12 3 32 32 H 1.08997 * 109.47453 * 300.00504 * 14 12 3 33 33 H 1.09002 * 109.46942 * 59.99658 * 19 18 17 34 34 H 1.08997 * 109.47243 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47088 * 299.99708 * 19 18 17 36 36 H 1.08999 * 109.47500 * 59.99978 * 20 18 17 37 37 H 1.09005 * 109.47326 * 180.02562 * 20 18 17 38 38 H 1.09005 * 109.47238 * 299.99699 * 20 18 17 39 39 H 1.09000 * 109.46617 * 60.00233 * 21 18 17 40 40 H 1.09005 * 109.46855 * 180.02562 * 21 18 17 41 41 H 1.08990 * 109.47303 * 300.00172 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1869 2.0479 -1.1842 5 1 2.7559 2.9654 -1.2111 6 6 1.6264 1.5444 -2.3501 7 7 0.9999 0.3870 -2.3325 8 14 1.7679 2.5058 -3.9454 9 1 3.2014 2.6897 -4.2869 10 1 1.0920 1.7578 -5.0357 11 1 1.1236 3.8336 -3.7820 12 6 2.3262 2.0493 1.2670 13 1 2.5652 3.0957 1.0773 14 6 1.1140 1.9635 2.1966 15 6 3.5065 1.3743 1.9169 16 7 4.5184 1.9660 2.5045 17 6 5.3187 0.9738 2.9334 18 6 6.6194 1.1353 3.6772 19 6 7.2132 -0.2436 3.9716 20 6 7.5994 1.9406 2.8217 21 6 6.3660 1.8732 4.9934 22 7 4.7667 -0.1497 2.5845 23 8 3.7248 0.0584 1.9993 24 1 -0.3633 -1.0263 0.0528 25 1 -0.3633 0.5589 0.8624 26 1 -0.3634 0.4675 -0.9152 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 0.6079 0.0353 -3.1471 30 1 0.8751 0.9171 2.3863 31 1 1.3434 2.4601 3.1394 32 1 0.2604 2.4516 1.7265 33 1 7.3937 -0.7692 3.0339 34 1 8.1542 -0.1267 4.5091 35 1 6.5150 -0.8173 4.5811 36 1 7.1764 2.9230 2.6119 37 1 8.5404 2.0571 3.3594 38 1 7.7800 1.4150 1.8839 39 1 5.6678 1.2995 5.6029 40 1 7.3069 1.9904 5.5312 41 1 5.9430 2.8555 4.7837 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330673948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:17 Heat of formation + Delta-G solvation = 86.373868 kcal Electronic energy + Delta-G solvation = -21562.796123 eV Core-core repulsion = 18482.130647 eV Total energy + Delta-G solvation = -3080.665477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.88074 -37.49741 -36.91672 -34.41277 -32.77958 -30.77328 -29.64442 -28.67279 -27.33582 -27.30637 -24.45835 -23.96933 -23.17903 -21.73113 -20.40849 -18.80937 -17.36240 -17.07635 -16.40966 -15.31401 -14.94721 -14.69280 -14.16879 -13.89867 -13.79846 -13.30840 -12.45731 -12.39033 -12.27555 -12.13767 -11.98219 -11.81251 -11.71387 -11.44071 -11.41637 -11.29613 -11.05835 -10.92491 -10.81783 -10.71104 -10.64119 -10.48667 -10.32327 -10.03379 -9.70164 -9.48227 -9.24577 -8.42440 -7.04343 -5.73773 -3.30077 1.84462 2.81898 3.33732 3.39948 3.40258 3.61138 3.95430 4.32365 4.49558 4.89181 4.92678 5.09270 5.24762 5.38560 5.49397 5.56307 5.65533 5.73152 5.78527 5.82940 5.84208 5.85649 5.96254 6.03318 6.20563 6.24718 6.30179 6.36891 6.47650 6.60486 6.72578 6.76117 7.00240 7.13438 7.25705 7.58108 7.84970 8.19608 8.35768 8.83644 9.15207 9.68770 10.11044 11.17047 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.005459 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.547761 B = 5127.862901 C = 5546.248382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.162 3.838 3 N -0.578 5.578 4 C -0.258 4.258 5 H 0.076 0.924 6 C 0.002 3.998 7 N -0.898 5.898 8 Si 0.914 3.086 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.283 1.283 12 C 0.253 3.747 13 H 0.107 0.893 14 C -0.155 4.155 15 C 0.198 3.802 16 N -0.504 5.504 17 C 0.167 3.833 18 C 0.027 3.973 19 C -0.137 4.137 20 C -0.136 4.136 21 C -0.135 4.135 22 N -0.402 5.402 23 O 0.078 5.922 24 H 0.017 0.983 25 H 0.013 0.987 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.008 0.992 29 H 0.253 0.747 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 1.691 11.075 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.038 3.962 3 N -0.298 5.298 4 C -0.386 4.386 5 H 0.094 0.906 6 C -0.195 4.195 7 N -0.544 5.544 8 Si 0.744 3.256 9 H -0.211 1.211 10 H -0.215 1.215 11 H -0.209 1.209 12 C 0.139 3.861 13 H 0.125 0.875 14 C -0.215 4.215 15 C -0.025 4.025 16 N -0.238 5.238 17 C -0.106 4.106 18 C 0.025 3.975 19 C -0.195 4.195 20 C -0.194 4.194 21 C -0.193 4.193 22 N -0.112 5.112 23 O 0.024 5.976 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.239 1.130 11.157 13.348 hybrid contribution -0.093 0.395 -0.966 1.048 sum 7.146 1.525 10.191 12.540 Atomic orbital electron populations 1.22636 0.98591 0.97844 1.01666 1.21083 0.92995 0.83219 0.98901 1.44371 1.74026 1.11811 0.99545 1.19332 1.28106 1.06008 0.85176 0.90617 1.24914 0.98703 0.97456 0.98405 1.70181 1.39897 1.17929 1.26409 0.86182 0.77661 0.79162 0.82603 1.21101 1.21478 1.20897 1.19068 0.85615 0.95048 0.86405 0.87502 1.22341 0.98397 1.02516 0.98203 1.31395 0.98387 0.80265 0.92449 1.71784 1.03806 1.31210 1.17006 1.25572 0.99671 0.84514 1.00840 1.18859 0.87130 0.97306 0.94159 1.21803 1.00502 0.94848 1.02334 1.21832 0.97843 1.00491 0.99278 1.21824 1.01814 1.00813 0.94861 1.74527 0.98298 1.24434 1.13984 1.85358 1.29746 1.28315 1.54201 0.96440 0.96777 0.88853 0.88105 0.97415 0.93586 0.92124 0.93279 0.90577 0.92062 0.91747 0.92143 0.91400 0.91684 0.92554 0.92685 0.91670 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.33 37.16 0.35 -2.99 16 2 C 0.16 3.84 4.73 -4.04 -0.02 3.82 16 3 N -0.58 -13.64 2.43 -166.97 -0.41 -14.05 16 4 C -0.26 -6.62 9.72 -15.06 -0.15 -6.77 16 5 H 0.08 1.90 7.75 -52.49 -0.41 1.50 16 6 C 0.00 0.05 5.36 -17.43 -0.09 -0.04 16 7 N -0.90 -23.87 7.20 55.49 0.40 -23.47 16 8 Si 0.91 20.88 29.56 -169.99 -5.02 15.86 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.25 5.06 3.25 -69.08 -0.22 4.83 16 13 H 0.11 2.09 7.84 -51.93 -0.41 1.68 16 14 C -0.15 -2.66 7.93 37.16 0.29 -2.36 16 15 C 0.20 4.02 7.22 -13.06 -0.09 3.93 16 16 N -0.50 -9.76 11.55 -9.87 -0.11 -9.87 16 17 C 0.17 3.02 6.40 -156.37 -1.00 2.02 16 18 C 0.03 0.37 0.99 -155.66 -0.15 0.22 16 19 C -0.14 -1.67 7.97 37.16 0.30 -1.37 16 20 C -0.14 -1.70 8.46 37.16 0.31 -1.38 16 21 C -0.14 -1.57 8.46 37.16 0.31 -1.25 16 22 N -0.40 -8.01 11.47 30.90 0.35 -7.66 16 23 O 0.08 1.66 9.31 18.11 0.17 1.83 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.01 0.28 5.70 -51.93 -0.30 -0.02 16 26 H 0.09 2.36 5.82 -51.93 -0.30 2.05 16 27 H 0.10 2.71 5.95 -51.93 -0.31 2.41 16 28 H 0.01 0.18 5.96 -51.93 -0.31 -0.13 16 29 H 0.25 6.61 8.31 -40.82 -0.34 6.28 16 30 H 0.06 1.07 6.57 -51.93 -0.34 0.73 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -27.46 323.94 -6.47 -33.93 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.56 Total: -0.09 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.17 Total: -1.36 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.23 Total: -55.05 kcal Atomic # 8 Polarization: 1.66 SS G_CDS: 0.17 Total: 1.83 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.46 -6.47 -33.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330673948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.302 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds