Wall clock time and date at job start Mon Mar 30 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46822 * 2 1 4 4 C 1.36943 * 120.00339 * 273.05644 * 3 2 1 5 5 H 1.07995 * 119.99998 * 194.35217 * 4 3 2 6 6 C 1.38810 * 119.99822 * 14.34989 * 4 3 2 7 7 N 1.31621 * 119.99618 * 356.02639 * 6 4 3 8 8 Si 1.86797 * 120.00019 * 176.29735 * 6 4 3 9 9 H 1.48502 * 109.46882 * 60.00417 * 8 6 4 10 10 H 1.48497 * 109.47128 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47199 * 300.00163 * 8 6 4 12 12 C 1.46508 * 119.99827 * 93.05765 * 3 2 1 13 13 H 1.08999 * 109.46862 * 186.32143 * 12 3 2 14 14 C 1.52999 * 109.47165 * 306.31731 * 12 3 2 15 15 C 1.50702 * 109.47096 * 66.32075 * 12 3 2 16 16 N 1.31125 * 126.54910 * 137.34332 * 15 12 3 17 17 C 1.34500 * 105.61406 * 179.91864 * 16 15 12 18 18 C 1.50695 * 126.28992 * 180.13169 * 17 16 15 19 19 C 1.52997 * 109.47360 * 180.23939 * 18 17 16 20 20 C 1.53000 * 109.47012 * 300.24000 * 18 17 16 21 21 C 1.53008 * 109.47159 * 60.23621 * 18 17 16 22 22 N 1.29948 * 107.42260 * 0.35272 * 17 16 15 23 23 O 1.21304 * 110.25101 * 359.78030 * 22 17 16 24 24 H 1.09003 * 109.47028 * 182.94661 * 1 2 3 25 25 H 1.09001 * 109.47075 * 302.94539 * 1 2 3 26 26 H 1.09000 * 109.47508 * 62.94235 * 1 2 3 27 27 H 1.09000 * 109.46992 * 240.00828 * 2 1 3 28 28 H 1.08998 * 109.46989 * 120.00022 * 2 1 3 29 29 H 0.97004 * 119.99500 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46610 * 59.99978 * 14 12 3 31 31 H 1.09000 * 109.46860 * 179.97438 * 14 12 3 32 32 H 1.08997 * 109.47453 * 300.00504 * 14 12 3 33 33 H 1.09002 * 109.46942 * 59.99658 * 19 18 17 34 34 H 1.08997 * 109.47243 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47088 * 299.99708 * 19 18 17 36 36 H 1.08999 * 109.47500 * 59.99978 * 20 18 17 37 37 H 1.09005 * 109.47326 * 180.02562 * 20 18 17 38 38 H 1.09005 * 109.47238 * 299.99699 * 20 18 17 39 39 H 1.09000 * 109.46617 * 60.00233 * 21 18 17 40 40 H 1.09005 * 109.46855 * 180.02562 * 21 18 17 41 41 H 1.08990 * 109.47303 * 300.00172 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1869 2.0479 -1.1842 5 1 2.7559 2.9654 -1.2111 6 6 1.6264 1.5444 -2.3501 7 7 0.9999 0.3870 -2.3325 8 14 1.7679 2.5058 -3.9454 9 1 3.2014 2.6897 -4.2869 10 1 1.0920 1.7578 -5.0357 11 1 1.1236 3.8336 -3.7820 12 6 2.3262 2.0493 1.2670 13 1 2.5652 3.0957 1.0773 14 6 1.1140 1.9635 2.1966 15 6 3.5065 1.3743 1.9169 16 7 4.5184 1.9660 2.5045 17 6 5.3187 0.9738 2.9334 18 6 6.6194 1.1353 3.6772 19 6 7.2132 -0.2436 3.9716 20 6 7.5994 1.9406 2.8217 21 6 6.3660 1.8732 4.9934 22 7 4.7667 -0.1497 2.5845 23 8 3.7248 0.0584 1.9993 24 1 -0.3633 -1.0263 0.0528 25 1 -0.3633 0.5589 0.8624 26 1 -0.3634 0.4675 -0.9152 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 0.6079 0.0353 -3.1471 30 1 0.8751 0.9171 2.3863 31 1 1.3434 2.4601 3.1394 32 1 0.2604 2.4516 1.7265 33 1 7.3937 -0.7692 3.0339 34 1 8.1542 -0.1267 4.5091 35 1 6.5150 -0.8173 4.5811 36 1 7.1764 2.9230 2.6119 37 1 8.5404 2.0571 3.3594 38 1 7.7800 1.4150 1.8839 39 1 5.6678 1.2995 5.6029 40 1 7.3069 1.9904 5.5312 41 1 5.9430 2.8555 4.7837 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330673948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:16 Heat of formation + Delta-G solvation = 70.513135 kcal Electronic energy + Delta-G solvation = -21563.483896 eV Core-core repulsion = 18482.130647 eV Total energy + Delta-G solvation = -3081.353250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.41049 -38.77944 -38.55323 -35.90958 -34.47732 -32.44394 -31.39707 -30.41509 -28.31318 -28.25085 -26.20560 -25.38315 -24.86041 -23.37452 -22.03050 -20.19713 -18.93018 -18.86034 -17.95724 -17.11086 -16.38860 -16.07343 -15.60579 -15.21150 -15.11744 -14.89760 -14.05337 -13.84809 -13.56172 -13.42063 -13.41369 -13.15891 -13.11489 -12.72705 -12.69828 -12.62301 -12.54649 -12.48952 -12.35730 -12.35024 -12.13986 -11.96835 -11.79202 -11.74272 -11.52618 -11.32630 -10.78408 -10.35727 -8.94048 -7.70269 -5.27752 0.27988 1.33974 1.51991 1.52553 1.59070 2.04161 2.46003 2.67484 3.09453 3.33512 3.57184 3.79452 3.88788 4.01480 4.24492 4.31522 4.39921 4.66424 4.68993 4.72044 4.75768 4.77949 4.87008 4.88685 4.89546 4.99780 5.00867 5.08085 5.16620 5.23474 5.27884 5.29268 5.34387 5.35988 5.41570 5.58668 5.89810 6.30461 6.40139 7.18630 7.28884 7.79729 8.18932 9.18653 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.005459 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.547761 B = 5127.862901 C = 5546.248382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 N -0.592 5.592 4 C -0.269 4.269 5 H 0.077 0.923 6 C -0.043 4.043 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.287 1.287 10 H -0.294 1.294 11 H -0.276 1.276 12 C 0.252 3.748 13 H 0.111 0.889 14 C -0.144 4.144 15 C 0.192 3.808 16 N -0.508 5.508 17 C 0.174 3.826 18 C 0.019 3.981 19 C -0.133 4.133 20 C -0.132 4.132 21 C -0.129 4.129 22 N -0.419 5.419 23 O 0.054 5.946 24 H 0.025 0.975 25 H 0.031 0.969 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.015 0.985 29 H 0.247 0.753 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 2.718 12.700 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 N -0.312 5.312 4 C -0.398 4.398 5 H 0.095 0.905 6 C -0.238 4.238 7 N -0.561 5.561 8 Si 0.800 3.200 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.201 1.201 12 C 0.139 3.861 13 H 0.128 0.872 14 C -0.203 4.203 15 C -0.031 4.031 16 N -0.242 5.242 17 C -0.100 4.100 18 C 0.017 3.983 19 C -0.190 4.190 20 C -0.190 4.190 21 C -0.187 4.187 22 N -0.134 5.134 23 O 0.004 5.996 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.391 2.167 12.797 15.455 hybrid contribution -0.351 0.085 -1.392 1.438 sum 8.039 2.253 11.405 14.135 Atomic orbital electron populations 1.22433 0.97652 0.98351 1.01037 1.20822 0.93662 0.83416 0.97389 1.44426 1.74626 1.11817 1.00336 1.19578 1.27954 1.06062 0.86254 0.90539 1.25553 0.99025 0.98318 1.00880 1.70381 1.40525 1.18815 1.26430 0.85292 0.77169 0.78165 0.79374 1.21332 1.22007 1.20142 1.19286 0.86406 0.94757 0.85625 0.87154 1.22214 0.96910 1.02539 0.98633 1.31309 0.98632 0.80325 0.92868 1.71813 1.03728 1.31532 1.17144 1.26507 1.00494 0.83535 0.99435 1.19271 0.85241 0.98834 0.94912 1.21797 1.01889 0.93518 1.01815 1.21831 0.99068 0.99237 0.98902 1.21811 1.03536 0.99709 0.93665 1.74534 0.98387 1.25372 1.15091 1.85323 1.30578 1.28663 1.55043 0.95603 0.94974 0.91417 0.91655 0.96740 0.94281 0.92664 0.90662 0.90335 0.93674 0.88169 0.92911 0.92491 0.87999 0.94113 0.93152 0.88205 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.12 9.33 71.98 0.67 -5.44 16 2 C 0.17 8.25 4.73 86.38 0.41 8.66 16 3 N -0.59 -28.09 2.43 -682.18 -1.66 -29.75 16 4 C -0.27 -13.95 9.72 84.03 0.82 -13.14 16 5 H 0.08 3.85 7.75 -2.91 -0.02 3.83 16 6 C -0.04 -2.25 5.36 84.86 0.46 -1.80 16 7 N -0.91 -49.66 7.20 21.65 0.16 -49.51 16 8 Si 0.97 43.29 29.56 68.60 2.03 45.32 16 9 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 C 0.25 9.94 3.25 44.24 0.14 10.08 16 13 H 0.11 4.24 7.84 -2.39 -0.02 4.22 16 14 C -0.14 -4.70 7.93 71.98 0.57 -4.13 16 15 C 0.19 7.73 7.22 88.38 0.64 8.37 16 16 N -0.51 -19.28 11.55 -303.19 -3.50 -22.79 16 17 C 0.17 6.13 6.40 138.46 0.89 7.02 16 18 C 0.02 0.49 0.99 -52.93 -0.05 0.43 16 19 C -0.13 -2.92 7.97 71.98 0.57 -2.35 16 20 C -0.13 -2.99 8.46 71.98 0.61 -2.38 16 21 C -0.13 -2.61 8.46 71.98 0.61 -2.00 16 22 N -0.42 -16.71 11.47 -60.31 -0.69 -17.40 16 23 O 0.05 2.29 9.31 74.85 0.70 2.99 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.03 1.29 5.70 -2.39 -0.01 1.27 16 26 H 0.07 3.45 5.82 -2.39 -0.01 3.44 16 27 H 0.07 3.63 5.95 -2.39 -0.01 3.62 16 28 H 0.01 0.67 5.96 -2.39 -0.01 0.65 16 29 H 0.25 13.22 8.31 -92.71 -0.77 12.44 16 30 H 0.05 1.87 6.57 -2.39 -0.02 1.85 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.54 7.83 -2.39 -0.02 2.52 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -59.63 323.94 4.36 -55.27 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.00 Total: 12.54 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 6.33 Total: 3.32 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.70 Total: -119.44 kcal Atomic # 8 Polarization: 2.29 SS G_CDS: 0.70 Total: 2.99 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -59.63 4.36 -55.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330673948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.781 kcal (2) G-P(sol) polarization free energy of solvation -59.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds