Wall clock time and date at job start Mon Mar 30 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46850 * 110.99835 * 45.74174 * 11 10 9 13 13 C 1.53048 * 109.51217 * 185.85711 * 12 11 10 14 14 C 1.53087 * 109.25914 * 300.86587 * 13 12 11 15 15 C 1.52940 * 109.50923 * 177.62285 * 14 13 12 16 16 C 1.53015 * 109.46031 * 60.12337 * 15 14 13 17 17 C 1.52988 * 109.47523 * 59.93077 * 16 15 14 18 18 O 1.42899 * 109.46935 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.49520 * 300.00821 * 17 16 15 20 20 C 1.52963 * 109.47729 * 297.75112 * 14 13 12 21 21 C 1.53070 * 109.23430 * 57.64478 * 14 13 12 22 22 C 1.46842 * 111.00041 * 169.99637 * 11 10 9 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.08991 * 109.46607 * 305.87232 * 12 11 10 29 29 H 1.09000 * 109.46380 * 65.84558 * 12 11 10 30 30 H 1.08994 * 109.50714 * 180.92777 * 13 12 11 31 31 H 1.09004 * 109.54308 * 60.81607 * 13 12 11 32 32 H 1.09004 * 109.47307 * 180.11834 * 15 14 13 33 33 H 1.08997 * 109.47450 * 300.12192 * 15 14 13 34 34 H 1.09003 * 109.46877 * 299.92407 * 16 15 14 35 35 H 1.09012 * 109.46898 * 179.97438 * 16 15 14 36 36 H 1.09000 * 109.47041 * 60.00990 * 17 16 15 37 37 H 0.96704 * 113.99586 * 300.02257 * 18 17 16 38 38 H 1.09002 * 109.46960 * 300.01049 * 19 17 16 39 39 H 1.09000 * 109.47563 * 180.02562 * 19 17 16 40 40 H 1.09000 * 109.47599 * 59.87280 * 20 14 13 41 41 H 1.09002 * 109.47630 * 179.88807 * 20 14 13 42 42 H 1.08997 * 109.50646 * 182.42657 * 21 14 13 43 43 H 1.09000 * 109.50444 * 62.30663 * 21 14 13 44 44 H 1.08999 * 109.46255 * 294.17035 * 22 11 10 45 45 H 1.08999 * 109.45739 * 54.15014 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.4185 -4.9119 -0.9804 13 6 -0.4119 -6.1909 -0.8505 14 6 0.4900 -7.4048 -1.0884 15 6 -0.3209 -8.6880 -0.9016 16 6 -1.4770 -8.7108 -1.9038 17 6 -0.9190 -8.6611 -3.3275 18 8 -1.9987 -8.6830 -4.2633 19 6 -0.1083 -7.3769 -3.5135 20 6 1.0481 -7.3544 -2.5117 21 6 1.6458 -7.3786 -0.0852 22 6 2.4165 -6.0652 -0.2370 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 -0.2172 -4.0458 -0.7967 29 1 0.8350 -4.8498 -1.9857 30 1 -1.2125 -6.1817 -1.5900 31 1 -0.8411 -6.2469 0.1499 32 1 0.3223 -9.5519 -1.0691 33 1 -0.7186 -8.7222 0.1126 34 1 -2.1209 -7.8475 -1.7355 35 1 -2.0549 -9.6256 -1.7712 36 1 -0.2753 -9.5245 -3.4958 37 1 -2.5560 -9.4709 -4.2023 38 1 -0.7518 -6.5134 -3.3452 39 1 0.2888 -7.3416 -4.5280 40 1 1.6253 -6.4393 -2.6436 41 1 1.6918 -8.2177 -2.6804 42 1 2.3145 -8.2174 -0.2784 43 1 1.2503 -7.4537 0.9277 44 1 2.8243 -5.9977 -1.2456 45 1 3.2311 -6.0365 0.4868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336259726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:53 Heat of formation + Delta-G solvation = -75.514783 kcal Electronic energy + Delta-G solvation = -21661.798098 eV Core-core repulsion = 18677.652947 eV Total energy + Delta-G solvation = -2984.145152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50256 -37.74614 -35.75284 -33.25739 -31.85077 -31.02566 -30.46701 -29.15285 -26.37654 -24.13989 -23.21556 -23.06651 -21.96828 -20.39641 -19.71564 -18.02238 -17.29876 -16.58364 -15.84913 -14.86554 -14.72987 -14.48830 -14.36740 -14.21232 -14.16727 -13.75182 -13.21662 -13.08196 -12.53921 -12.30869 -12.16307 -11.96947 -11.63911 -11.58460 -11.36977 -11.28369 -10.94834 -10.90051 -10.84463 -10.69107 -10.53128 -10.22335 -9.96448 -9.87751 -9.82382 -9.69187 -9.24679 -9.03491 -8.31867 -7.57333 -5.98519 -4.00777 3.34493 3.38825 3.41231 4.02695 4.41424 4.51977 4.59294 4.65259 4.78923 4.98964 5.02455 5.16245 5.28691 5.32889 5.37483 5.41163 5.52569 5.55451 5.64203 5.77062 5.79823 5.84727 5.89006 5.92788 6.01428 6.02415 6.09529 6.18232 6.22175 6.29649 6.34098 6.39049 6.45172 6.54585 6.68458 6.70460 6.97328 7.49032 7.57469 7.68125 7.85941 7.88915 8.08149 8.45358 9.05742 9.62790 11.12824 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.004087 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.949018 B = 6848.998711 C = 7308.605786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.050 3.950 13 C -0.107 4.107 14 C -0.058 4.058 15 C -0.103 4.103 16 C -0.153 4.153 17 C 0.107 3.893 18 O -0.570 6.570 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.103 4.103 22 C 0.054 3.946 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.017 0.983 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.374 0.626 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.028 0.972 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -20.270 -4.290 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.078 4.078 13 C -0.145 4.145 14 C -0.058 4.058 15 C -0.141 4.141 16 C -0.190 4.190 17 C 0.048 3.952 18 O -0.375 6.375 19 C -0.152 4.152 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.075 4.075 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.220 0.780 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.172 -19.630 -3.995 20.066 hybrid contribution 0.635 0.508 -0.593 1.007 sum -0.536 -19.121 -4.587 19.671 Atomic orbital electron populations 1.69958 1.06014 1.26692 1.50636 1.24985 0.94830 0.99149 0.95282 0.86657 0.79583 0.83161 0.78588 1.20316 1.21270 1.20222 1.21159 0.92961 0.91077 1.50920 0.92856 1.19233 0.94112 0.90496 0.97736 1.22297 0.96982 0.88336 0.98800 1.62029 1.11510 1.03369 1.49377 1.22208 0.94104 0.98310 0.93130 1.21759 0.97391 0.93426 1.01912 1.20573 0.95549 0.95056 0.94629 1.21508 0.96381 0.97296 0.98922 1.22300 0.98856 1.02459 0.95428 1.21831 0.87668 0.98202 0.87493 1.86543 1.44047 1.47300 1.59614 1.21523 0.97052 0.97148 0.99466 1.21638 0.96980 1.02321 0.93662 1.21601 0.96437 0.96600 0.99395 1.22065 0.95119 0.91264 0.99034 0.92945 0.96166 0.95740 0.92098 0.96431 0.89038 0.95438 0.91526 0.91400 0.92237 0.91553 0.90547 0.92221 0.93221 0.77963 0.90554 0.91684 0.90792 0.92253 0.92282 0.91206 0.95415 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.56 4.22 -27.89 -0.12 0.44 16 10 C 0.06 1.35 5.21 -3.83 -0.02 1.33 16 11 N -0.54 -9.88 4.80 -234.67 -1.13 -11.00 16 12 C 0.05 0.88 4.60 -3.83 -0.02 0.87 16 13 C -0.11 -1.51 4.18 -26.66 -0.11 -1.62 16 14 C -0.06 -0.68 0.51 -154.48 -0.08 -0.76 16 15 C -0.10 -1.01 4.74 -26.75 -0.13 -1.13 16 16 C -0.15 -1.44 5.27 -26.73 -0.14 -1.58 16 17 C 0.11 1.07 3.47 -26.74 -0.09 0.98 16 18 O -0.57 -6.01 13.32 -35.23 -0.47 -6.48 16 19 C -0.11 -1.33 5.30 -26.73 -0.14 -1.47 16 20 C -0.11 -1.25 4.15 -26.75 -0.11 -1.36 16 21 C -0.10 -1.25 4.88 -26.67 -0.13 -1.38 16 22 C 0.05 0.80 5.18 -3.83 -0.02 0.78 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.09 1.88 5.81 -51.93 -0.30 1.57 16 29 H 0.03 0.49 6.51 -51.93 -0.34 0.15 16 30 H 0.07 0.90 4.83 -51.93 -0.25 0.65 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.82 6.49 -51.93 -0.34 0.48 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.37 2.28 9.08 45.56 0.41 2.69 16 38 H 0.08 1.00 6.38 -51.93 -0.33 0.67 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.98 4.91 -51.93 -0.26 0.72 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.41 6.51 -51.93 -0.34 0.08 16 45 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -30.80 327.10 -9.57 -40.37 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.09 Total: 0.21 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.52 Total: -18.57 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.39 Total: -37.26 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.47 Total: -6.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.80 -9.57 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336259726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.147 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds