Wall clock time and date at job start Mon Mar 30 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46850 * 110.99835 * 45.74174 * 11 10 9 13 13 C 1.53048 * 109.51217 * 185.85711 * 12 11 10 14 14 C 1.53087 * 109.25914 * 300.86587 * 13 12 11 15 15 C 1.52940 * 109.50923 * 177.62285 * 14 13 12 16 16 C 1.53015 * 109.46031 * 60.12337 * 15 14 13 17 17 C 1.52988 * 109.47523 * 59.93077 * 16 15 14 18 18 O 1.42899 * 109.46935 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.49520 * 300.00821 * 17 16 15 20 20 C 1.52963 * 109.47729 * 297.75112 * 14 13 12 21 21 C 1.53070 * 109.23430 * 57.64478 * 14 13 12 22 22 C 1.46842 * 111.00041 * 169.99637 * 11 10 9 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.08991 * 109.46607 * 305.87232 * 12 11 10 29 29 H 1.09000 * 109.46380 * 65.84558 * 12 11 10 30 30 H 1.08994 * 109.50714 * 180.92777 * 13 12 11 31 31 H 1.09004 * 109.54308 * 60.81607 * 13 12 11 32 32 H 1.09004 * 109.47307 * 180.11834 * 15 14 13 33 33 H 1.08997 * 109.47450 * 300.12192 * 15 14 13 34 34 H 1.09003 * 109.46877 * 299.92407 * 16 15 14 35 35 H 1.09012 * 109.46898 * 179.97438 * 16 15 14 36 36 H 1.09000 * 109.47041 * 60.00990 * 17 16 15 37 37 H 0.96704 * 113.99586 * 300.02257 * 18 17 16 38 38 H 1.09002 * 109.46960 * 300.01049 * 19 17 16 39 39 H 1.09000 * 109.47563 * 180.02562 * 19 17 16 40 40 H 1.09000 * 109.47599 * 59.87280 * 20 14 13 41 41 H 1.09002 * 109.47630 * 179.88807 * 20 14 13 42 42 H 1.08997 * 109.50646 * 182.42657 * 21 14 13 43 43 H 1.09000 * 109.50444 * 62.30663 * 21 14 13 44 44 H 1.08999 * 109.46255 * 294.17035 * 22 11 10 45 45 H 1.08999 * 109.45739 * 54.15014 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.4185 -4.9119 -0.9804 13 6 -0.4119 -6.1909 -0.8505 14 6 0.4900 -7.4048 -1.0884 15 6 -0.3209 -8.6880 -0.9016 16 6 -1.4770 -8.7108 -1.9038 17 6 -0.9190 -8.6611 -3.3275 18 8 -1.9987 -8.6830 -4.2633 19 6 -0.1083 -7.3769 -3.5135 20 6 1.0481 -7.3544 -2.5117 21 6 1.6458 -7.3786 -0.0852 22 6 2.4165 -6.0652 -0.2370 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 -0.2172 -4.0458 -0.7967 29 1 0.8350 -4.8498 -1.9857 30 1 -1.2125 -6.1817 -1.5900 31 1 -0.8411 -6.2469 0.1499 32 1 0.3223 -9.5519 -1.0691 33 1 -0.7186 -8.7222 0.1126 34 1 -2.1209 -7.8475 -1.7355 35 1 -2.0549 -9.6256 -1.7712 36 1 -0.2753 -9.5245 -3.4958 37 1 -2.5560 -9.4709 -4.2023 38 1 -0.7518 -6.5134 -3.3452 39 1 0.2888 -7.3416 -4.5280 40 1 1.6253 -6.4393 -2.6436 41 1 1.6918 -8.2177 -2.6804 42 1 2.3145 -8.2174 -0.2784 43 1 1.2503 -7.4537 0.9277 44 1 2.8243 -5.9977 -1.2456 45 1 3.2311 -6.0365 0.4868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336259726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:53 Heat of formation + Delta-G solvation = -96.812850 kcal Electronic energy + Delta-G solvation = -21662.721652 eV Core-core repulsion = 18677.652947 eV Total energy + Delta-G solvation = -2985.068705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54018 -38.85282 -36.91800 -35.17944 -33.26169 -31.91468 -31.69922 -30.82907 -27.73089 -25.83507 -24.58439 -24.09886 -23.06775 -21.71257 -21.10035 -19.04268 -18.64825 -18.10482 -17.07508 -16.58355 -16.08370 -15.90221 -15.49896 -15.41697 -15.15955 -15.00756 -14.54117 -14.31013 -14.05554 -13.67402 -13.24853 -13.20525 -13.06966 -12.89629 -12.75476 -12.56200 -12.39823 -12.23634 -12.17416 -11.99814 -11.86636 -11.73036 -11.43167 -11.27826 -10.99748 -10.88431 -10.73473 -10.59245 -10.53093 -9.08842 -8.21651 -6.33475 1.38569 1.42066 1.50060 2.39092 3.10908 3.11822 3.30086 3.66960 3.74424 3.87713 4.01780 4.13901 4.27093 4.29253 4.36127 4.40448 4.42284 4.50166 4.56132 4.61078 4.65377 4.75686 4.78148 4.84661 4.95402 4.97933 5.00284 5.05450 5.12272 5.14627 5.18208 5.26114 5.29757 5.33190 5.39853 5.44025 5.57326 5.57486 5.66023 5.77478 6.09694 6.34090 6.39903 6.82985 6.95229 7.35677 8.90181 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.004087 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.949018 B = 6848.998711 C = 7308.605786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.078 3.922 11 N -0.545 5.545 12 C 0.056 3.944 13 C -0.098 4.098 14 C -0.054 4.054 15 C -0.098 4.098 16 C -0.149 4.149 17 C 0.110 3.890 18 O -0.591 6.591 19 C -0.117 4.117 20 C -0.103 4.103 21 C -0.096 4.096 22 C 0.050 3.950 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.009 1.009 26 H 0.063 0.937 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.393 0.607 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -22.364 -4.371 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.050 4.050 11 N -0.270 5.270 12 C -0.072 4.072 13 C -0.136 4.136 14 C -0.054 4.054 15 C -0.135 4.135 16 C -0.187 4.187 17 C 0.052 3.948 18 O -0.399 6.399 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.134 4.134 22 C -0.078 4.078 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.010 0.990 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.243 0.757 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.019 -21.757 -4.075 22.135 hybrid contribution 0.213 1.154 -0.597 1.317 sum 0.232 -20.603 -4.673 21.127 Atomic orbital electron populations 1.70105 1.07844 1.27875 1.51300 1.25968 0.95754 1.03337 0.94502 0.85477 0.78273 0.77942 0.79217 1.19206 1.20695 1.19031 1.21608 0.93517 0.92346 1.51168 0.92241 1.19039 0.94267 0.92233 0.95026 1.21965 0.95715 0.88583 0.98727 1.62012 1.12079 1.03049 1.49863 1.22082 0.93775 0.98795 0.92566 1.21676 0.97406 0.92928 1.01569 1.20551 0.95214 0.94884 0.94722 1.21468 0.96408 0.96426 0.99193 1.22264 0.98698 1.02805 0.94902 1.21793 0.87740 0.97573 0.87729 1.86498 1.44615 1.48948 1.59863 1.21514 0.97095 0.97497 0.99353 1.21570 0.96918 1.02183 0.93347 1.21597 0.96676 0.95722 0.99376 1.22221 0.95094 0.91086 0.99369 0.92727 0.98410 0.99032 0.91893 0.96584 0.93224 0.96066 0.91333 0.92076 0.89907 0.91231 0.92527 0.89805 0.91243 0.75728 0.93067 0.92036 0.93060 0.89901 0.89117 0.91380 0.95182 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.75 4.22 29.85 0.13 1.88 16 10 C 0.08 3.46 5.21 86.30 0.45 3.91 16 11 N -0.55 -20.51 4.80 -896.35 -4.31 -24.82 16 12 C 0.06 2.08 4.60 86.33 0.40 2.48 16 13 C -0.10 -2.81 4.18 30.64 0.13 -2.69 16 14 C -0.05 -1.15 0.51 -52.16 -0.03 -1.18 16 15 C -0.10 -1.57 4.74 30.58 0.14 -1.43 16 16 C -0.15 -2.41 5.27 30.60 0.16 -2.25 16 17 C 0.11 1.95 3.47 30.59 0.11 2.06 16 18 O -0.59 -11.40 13.32 -148.98 -1.98 -13.38 16 19 C -0.12 -2.63 5.30 30.60 0.16 -2.47 16 20 C -0.10 -2.20 4.15 30.58 0.13 -2.07 16 21 C -0.10 -2.10 4.88 30.63 0.15 -1.95 16 22 C 0.05 1.43 5.18 86.33 0.45 1.88 16 23 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 24 H 0.00 -0.14 6.21 -2.39 -0.01 -0.15 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H 0.06 2.75 8.14 -2.39 -0.02 2.74 16 27 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 28 H 0.05 2.24 5.81 -2.39 -0.01 2.22 16 29 H 0.02 0.80 6.51 -2.39 -0.02 0.79 16 30 H 0.07 1.94 4.83 -2.39 -0.01 1.92 16 31 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.15 6.49 -2.39 -0.02 1.13 16 35 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.39 3.85 9.08 -74.05 -0.67 3.18 16 38 H 0.05 1.39 6.38 -2.39 -0.02 1.37 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.33 4.91 -2.39 -0.01 1.32 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.03 0.86 6.51 -2.39 -0.02 0.85 16 45 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 Total: -1.00 -68.80 327.10 -0.62 -69.42 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.29 Total: 12.62 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 3.07 Total: -33.22 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -4.02 Total: -82.58 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.98 Total: -13.38 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.80 -0.62 -69.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336259726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.390 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds