Wall clock time and date at job start Mon Mar 30 2020 06:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.46843 * 110.99965 * 66.04431 * 12 11 10 14 14 C 1.53034 * 109.53104 * 174.13396 * 13 12 11 15 15 C 1.53140 * 109.28245 * 59.19196 * 14 13 12 16 16 C 1.53036 * 109.14870 * 302.43500 * 15 14 13 17 17 C 1.53106 * 109.47887 * 297.54572 * 16 15 14 18 18 C 1.53197 * 109.01561 * 183.11436 * 17 16 15 19 19 C 1.53085 * 109.15936 * 56.91238 * 18 17 16 20 20 O 1.42898 * 109.43019 * 302.35607 * 19 18 17 21 21 C 1.42924 * 114.10376 * 61.16874 * 20 19 18 22 22 C 1.46863 * 110.99493 * 301.83516 * 12 11 10 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 27 27 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 28 28 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 29 29 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 30 30 H 1.09003 * 109.46244 * 294.15709 * 13 12 11 31 31 H 1.09003 * 109.45806 * 54.11516 * 13 12 11 32 32 H 1.09000 * 109.50051 * 179.13278 * 14 13 12 33 33 H 1.08995 * 109.49975 * 299.21289 * 14 13 12 34 34 H 1.08995 * 109.52442 * 62.33551 * 15 14 13 35 35 H 1.09001 * 109.52073 * 182.47106 * 15 14 13 36 36 H 1.08996 * 109.54809 * 302.97239 * 17 16 15 37 37 H 1.09001 * 109.54681 * 63.16465 * 17 16 15 38 38 H 1.08997 * 109.52077 * 176.82234 * 18 17 16 39 39 H 1.09005 * 109.52021 * 296.94826 * 18 17 16 40 40 H 1.09000 * 109.47710 * 62.34751 * 19 18 17 41 41 H 1.09001 * 109.47837 * 182.36862 * 19 18 17 42 42 H 1.08997 * 109.47980 * 178.97639 * 21 20 19 43 43 H 1.09000 * 109.48164 * 58.93759 * 21 20 19 44 44 H 1.08994 * 109.46704 * 305.77749 * 22 12 11 45 45 H 1.09000 * 109.47050 * 65.76680 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 3.2000 -6.1413 1.2547 14 6 4.0759 -7.3959 1.2818 15 6 5.0272 -7.3745 0.0820 16 6 4.2074 -7.2842 -1.2071 17 6 3.3241 -8.5278 -1.3386 18 6 2.5670 -8.4640 -2.6688 19 6 3.5744 -8.3412 -3.8149 20 8 4.3831 -7.1802 -3.6146 21 6 5.1508 -7.2045 -2.4092 22 6 3.3267 -6.0342 -1.1631 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8906 28 1 0.8540 -5.0446 0.8914 29 1 0.8534 -5.0451 -0.8886 30 1 3.8319 -5.2556 1.3211 31 1 2.5119 -6.1603 2.0998 32 1 4.6550 -7.4154 2.2051 33 1 3.4436 -8.2822 1.2299 34 1 5.6869 -6.5100 0.1555 35 1 5.6227 -8.2875 0.0730 36 1 3.9472 -9.4218 -1.3162 37 1 2.6124 -8.5585 -0.5135 38 1 1.9784 -9.3725 -2.7969 39 1 1.9051 -7.5979 -2.6700 40 1 4.2093 -9.2269 -3.8373 41 1 3.0400 -8.2530 -4.7608 42 1 5.7499 -6.2964 -2.3415 43 1 5.8077 -8.0742 -2.4141 44 1 2.7307 -5.9775 -2.0739 45 1 3.9571 -5.1484 -1.0858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336689678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:59 Heat of formation + Delta-G solvation = -74.916909 kcal Electronic energy + Delta-G solvation = -21775.178243 eV Core-core repulsion = 18791.059017 eV Total energy + Delta-G solvation = -2984.119226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59363 -37.97822 -35.19254 -33.46365 -32.65880 -31.35818 -30.44456 -26.58941 -26.30375 -25.19405 -24.08411 -22.84266 -21.85352 -21.13108 -20.19816 -18.04622 -16.84318 -16.39584 -16.10362 -15.42701 -14.89669 -14.81523 -14.54614 -14.17966 -14.11764 -13.70488 -13.42764 -13.10677 -12.81336 -12.57665 -12.42696 -12.17613 -11.85842 -11.50454 -11.28445 -11.22068 -11.08460 -10.91420 -10.87254 -10.64134 -10.48076 -10.31683 -10.11476 -10.00196 -9.71763 -9.69918 -9.38173 -8.63929 -8.29612 -7.82043 -6.32903 -4.01759 3.44925 3.47165 3.65849 3.78148 4.17405 4.56774 4.59152 4.67162 4.68467 4.89616 4.98793 5.07749 5.19234 5.28011 5.31949 5.43641 5.47102 5.47824 5.57074 5.60862 5.65280 5.71881 5.77043 5.79830 5.82329 5.91845 5.99697 6.05503 6.08034 6.12967 6.18091 6.26607 6.37982 6.42449 6.53674 6.69928 6.95017 7.11883 7.36772 7.40653 7.43677 7.57929 8.25782 8.49307 8.92170 9.70466 11.07493 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.004324 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.779765 B = 6473.990531 C = 6777.892867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.601 4.601 8 H 0.045 0.955 9 C 0.012 3.988 10 C -0.137 4.137 11 C 0.053 3.947 12 N -0.535 5.535 13 C 0.050 3.950 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.088 4.088 17 C -0.102 4.102 18 C -0.156 4.156 19 C 0.060 3.940 20 O -0.379 6.379 21 C 0.071 3.929 22 C 0.069 3.931 23 H 0.268 0.732 24 H 0.005 0.995 25 H 0.006 0.994 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.063 -20.073 -2.325 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.190 4.190 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.639 4.639 8 H 0.064 0.936 9 C -0.026 4.026 10 C -0.176 4.176 11 C -0.074 4.074 12 N -0.258 5.258 13 C -0.078 4.078 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.089 4.089 17 C -0.139 4.139 18 C -0.193 4.193 19 C -0.017 4.017 20 O -0.297 6.297 21 C -0.006 4.006 22 C -0.059 4.059 23 H 0.079 0.921 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.598 -18.719 -2.484 20.749 hybrid contribution 0.678 -1.091 0.297 1.318 sum 9.276 -19.810 -2.188 21.983 Atomic orbital electron populations 1.70782 1.06858 1.30552 1.46833 1.25843 0.96576 1.02697 0.93848 0.83564 0.74912 0.75442 0.76469 1.20722 1.21516 1.21476 1.22059 0.94130 0.92188 1.55520 0.93630 1.19145 0.94523 0.93123 0.95796 1.22087 0.99691 0.95360 1.00430 1.22307 0.94574 0.88450 1.02063 1.62217 1.17715 1.44035 1.01825 1.22078 0.96158 0.96806 0.92726 1.21589 0.97487 0.98793 0.97355 1.21553 0.97458 1.01603 0.94071 1.21176 0.95965 0.96714 0.95030 1.21545 0.98637 0.95608 0.98107 1.22202 0.98867 1.02904 0.95375 1.22583 0.92486 0.88083 0.98557 1.87958 1.59770 1.41473 1.40537 1.22611 0.92412 1.01897 0.83686 1.22015 0.94679 0.95018 0.94183 0.92140 0.97626 0.97557 0.93069 0.93359 0.91332 0.91272 0.94415 0.91095 0.91865 0.91183 0.91991 0.92044 0.92984 0.89773 0.91392 0.90394 0.93695 0.89225 0.89040 0.93278 0.90233 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.69 13.65 55.43 0.76 -27.93 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 25.96 29.90 -169.99 -5.08 20.87 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.60 -17.70 9.11 -34.44 -0.31 -18.01 16 8 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 9 C 0.01 0.31 4.28 -27.88 -0.12 0.19 16 10 C -0.14 -2.91 4.45 -26.73 -0.12 -3.03 16 11 C 0.05 0.94 5.36 -3.82 -0.02 0.92 16 12 N -0.54 -7.96 4.09 -234.70 -0.96 -8.92 16 13 C 0.05 0.69 5.05 -3.84 -0.02 0.67 16 14 C -0.11 -1.24 5.74 -26.64 -0.15 -1.40 16 15 C -0.11 -1.14 4.79 -26.64 -0.13 -1.27 16 16 C -0.09 -1.01 0.51 -154.44 -0.08 -1.09 16 17 C -0.10 -1.07 4.31 -26.57 -0.11 -1.19 16 18 C -0.16 -1.61 5.77 -26.59 -0.15 -1.77 16 19 C 0.06 0.61 6.84 37.20 0.25 0.86 16 20 O -0.38 -4.85 10.21 -35.23 -0.36 -5.21 16 21 C 0.07 0.80 5.54 37.16 0.21 1.00 16 22 C 0.07 1.00 3.17 -3.86 -0.01 0.99 16 23 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 24 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 25 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 26 H 0.05 1.11 6.51 -51.93 -0.34 0.78 16 27 H 0.05 1.04 6.68 -51.93 -0.35 0.69 16 28 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.58 6.76 -51.93 -0.35 0.23 16 31 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.74 6.66 -51.93 -0.35 0.40 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.98 6.10 -51.93 -0.32 0.66 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.95 6.61 -51.93 -0.34 0.61 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 1.25 6.12 -51.93 -0.32 0.93 16 45 H 0.04 0.63 6.60 -51.93 -0.34 0.29 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -31.33 330.15 -9.64 -40.97 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.10 Total: -1.96 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -0.87 Total: -22.79 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.20 Total: -36.85 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.36 Total: -5.21 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.33 -9.64 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336689678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.949 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds