Wall clock time and date at job start Mon Mar 30 2020 06:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.46843 * 110.99965 * 66.04431 * 12 11 10 14 14 C 1.53034 * 109.53104 * 174.13396 * 13 12 11 15 15 C 1.53140 * 109.28245 * 59.19196 * 14 13 12 16 16 C 1.53036 * 109.14870 * 302.43500 * 15 14 13 17 17 C 1.53106 * 109.47887 * 297.54572 * 16 15 14 18 18 C 1.53197 * 109.01561 * 183.11436 * 17 16 15 19 19 C 1.53085 * 109.15936 * 56.91238 * 18 17 16 20 20 O 1.42898 * 109.43019 * 302.35607 * 19 18 17 21 21 C 1.42924 * 114.10376 * 61.16874 * 20 19 18 22 22 C 1.46863 * 110.99493 * 301.83516 * 12 11 10 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 27 27 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 28 28 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 29 29 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 30 30 H 1.09003 * 109.46244 * 294.15709 * 13 12 11 31 31 H 1.09003 * 109.45806 * 54.11516 * 13 12 11 32 32 H 1.09000 * 109.50051 * 179.13278 * 14 13 12 33 33 H 1.08995 * 109.49975 * 299.21289 * 14 13 12 34 34 H 1.08995 * 109.52442 * 62.33551 * 15 14 13 35 35 H 1.09001 * 109.52073 * 182.47106 * 15 14 13 36 36 H 1.08996 * 109.54809 * 302.97239 * 17 16 15 37 37 H 1.09001 * 109.54681 * 63.16465 * 17 16 15 38 38 H 1.08997 * 109.52077 * 176.82234 * 18 17 16 39 39 H 1.09005 * 109.52021 * 296.94826 * 18 17 16 40 40 H 1.09000 * 109.47710 * 62.34751 * 19 18 17 41 41 H 1.09001 * 109.47837 * 182.36862 * 19 18 17 42 42 H 1.08997 * 109.47980 * 178.97639 * 21 20 19 43 43 H 1.09000 * 109.48164 * 58.93759 * 21 20 19 44 44 H 1.08994 * 109.46704 * 305.77749 * 22 12 11 45 45 H 1.09000 * 109.47050 * 65.76680 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 3.2000 -6.1413 1.2547 14 6 4.0759 -7.3959 1.2818 15 6 5.0272 -7.3745 0.0820 16 6 4.2074 -7.2842 -1.2071 17 6 3.3241 -8.5278 -1.3386 18 6 2.5670 -8.4640 -2.6688 19 6 3.5744 -8.3412 -3.8149 20 8 4.3831 -7.1802 -3.6146 21 6 5.1508 -7.2045 -2.4092 22 6 3.3267 -6.0342 -1.1631 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8906 28 1 0.8540 -5.0446 0.8914 29 1 0.8534 -5.0451 -0.8886 30 1 3.8319 -5.2556 1.3211 31 1 2.5119 -6.1603 2.0998 32 1 4.6550 -7.4154 2.2051 33 1 3.4436 -8.2822 1.2299 34 1 5.6869 -6.5100 0.1555 35 1 5.6227 -8.2875 0.0730 36 1 3.9472 -9.4218 -1.3162 37 1 2.6124 -8.5585 -0.5135 38 1 1.9784 -9.3725 -2.7969 39 1 1.9051 -7.5979 -2.6700 40 1 4.2093 -9.2269 -3.8373 41 1 3.0400 -8.2530 -4.7608 42 1 5.7499 -6.2964 -2.3415 43 1 5.8077 -8.0742 -2.4141 44 1 2.7307 -5.9775 -2.0739 45 1 3.9571 -5.1484 -1.0858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336689678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:58 Heat of formation + Delta-G solvation = -94.059353 kcal Electronic energy + Delta-G solvation = -21776.008322 eV Core-core repulsion = 18791.059017 eV Total energy + Delta-G solvation = -2984.949305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57786 -39.08666 -36.69997 -35.26391 -33.65695 -32.52442 -32.00347 -28.17126 -27.41054 -26.06095 -25.78825 -24.06251 -23.38465 -22.34893 -21.46597 -19.11800 -18.95520 -17.44866 -16.98349 -16.54530 -16.15797 -15.93204 -15.70191 -15.61953 -15.44697 -15.29114 -14.84273 -14.64683 -14.04052 -13.58433 -13.44861 -13.36682 -13.22587 -13.13488 -12.91994 -12.61863 -12.39136 -12.13894 -12.00679 -11.90452 -11.82228 -11.76999 -11.47109 -11.36121 -11.17018 -10.91554 -10.81532 -10.58818 -10.26636 -9.22420 -8.72438 -6.44697 1.48112 1.56927 1.76832 2.52748 2.85826 3.06593 3.10827 3.65452 3.75108 3.77801 3.98747 4.07910 4.12385 4.16844 4.23594 4.29447 4.33203 4.44067 4.49656 4.59574 4.62127 4.67214 4.68287 4.71999 4.79712 4.83315 4.91810 4.94078 4.96294 4.97815 5.03004 5.12772 5.19975 5.20714 5.30928 5.35803 5.42511 5.48124 5.55465 5.93172 6.06077 6.12881 6.15390 6.31150 6.52927 7.37392 8.66645 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.004324 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.779765 B = 6473.990531 C = 6777.892867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.118 2.882 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.622 4.622 8 H 0.044 0.956 9 C 0.013 3.987 10 C -0.118 4.118 11 C 0.064 3.936 12 N -0.524 5.524 13 C 0.046 3.954 14 C -0.107 4.107 15 C -0.107 4.107 16 C -0.083 4.083 17 C -0.098 4.098 18 C -0.154 4.154 19 C 0.056 3.944 20 O -0.406 6.406 21 C 0.070 3.930 22 C 0.073 3.927 23 H 0.255 0.745 24 H -0.010 1.010 25 H -0.013 1.013 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.856 -21.768 -2.060 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.236 4.236 3 Si 0.938 3.062 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.660 4.660 8 H 0.062 0.938 9 C -0.025 4.025 10 C -0.157 4.157 11 C -0.064 4.064 12 N -0.246 5.246 13 C -0.082 4.082 14 C -0.145 4.145 15 C -0.145 4.145 16 C -0.084 4.084 17 C -0.135 4.135 18 C -0.192 4.192 19 C -0.020 4.020 20 O -0.325 6.325 21 C -0.007 4.007 22 C -0.055 4.055 23 H 0.064 0.936 24 H 0.009 0.991 25 H 0.005 0.995 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 10.398 -20.454 -2.217 23.053 hybrid contribution 0.090 -0.587 0.196 0.626 sum 10.488 -21.042 -2.021 23.597 Atomic orbital electron populations 1.70920 1.07868 1.29822 1.48629 1.27489 0.96640 1.06886 0.92559 0.82943 0.74185 0.71050 0.78017 1.20457 1.19316 1.19537 1.22482 0.94385 0.93711 1.55400 0.93754 1.19089 0.94957 0.94398 0.94028 1.21870 0.98522 0.95540 0.99779 1.22114 0.94855 0.87505 1.01948 1.62280 1.17849 1.41712 1.02799 1.22210 0.96257 0.97883 0.91880 1.21568 0.97262 0.97123 0.98521 1.21570 0.97267 1.02698 0.92954 1.21153 0.95784 0.95349 0.96094 1.21522 0.98499 0.95790 0.97669 1.22175 0.98755 1.02578 0.95667 1.22735 0.92544 0.88033 0.98676 1.87926 1.60377 1.43029 1.41216 1.22681 0.92379 1.02731 0.82953 1.21984 0.94320 0.96096 0.93131 0.93561 0.99134 0.99464 0.93967 0.93606 0.91033 0.91797 0.96326 0.90957 0.90015 0.90275 0.92680 0.89273 0.90627 0.90724 0.89538 0.93093 0.91552 0.88688 0.89768 0.90757 0.92011 0.96818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.65 21.45 0.29 -59.60 16 2 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 3 Si 1.12 51.89 29.90 68.60 2.05 53.94 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.62 -37.43 9.11 25.60 0.23 -37.20 16 8 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 9 C 0.01 0.71 4.28 29.85 0.13 0.84 16 10 C -0.12 -5.21 4.45 30.59 0.14 -5.07 16 11 C 0.06 2.32 5.36 86.30 0.46 2.78 16 12 N -0.52 -15.61 4.09 -896.45 -3.67 -19.28 16 13 C 0.05 1.22 5.05 86.33 0.44 1.65 16 14 C -0.11 -2.05 5.74 30.65 0.18 -1.88 16 15 C -0.11 -1.95 4.79 30.65 0.15 -1.81 16 16 C -0.08 -1.77 0.51 -52.14 -0.03 -1.79 16 17 C -0.10 -1.81 4.31 30.70 0.13 -1.68 16 18 C -0.15 -2.94 5.77 30.69 0.18 -2.77 16 19 C 0.06 1.04 6.84 72.01 0.49 1.53 16 20 O -0.41 -10.02 10.21 -148.98 -1.52 -11.54 16 21 C 0.07 1.44 5.54 71.99 0.40 1.84 16 22 C 0.07 2.13 3.17 86.30 0.27 2.40 16 23 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 24 H -0.01 -0.55 8.01 -2.39 -0.02 -0.57 16 25 H -0.01 -0.75 8.01 -2.38 -0.02 -0.77 16 26 H 0.04 1.91 6.51 -2.39 -0.02 1.90 16 27 H 0.05 2.02 6.68 -2.39 -0.02 2.00 16 28 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.02 0.57 6.76 -2.39 -0.02 0.55 16 31 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.42 6.66 -2.39 -0.02 1.41 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.55 6.10 -2.39 -0.01 1.54 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.25 6.61 -2.38 -0.02 1.23 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 2.02 6.12 -2.39 -0.01 2.01 16 45 H 0.01 0.46 6.60 -2.39 -0.02 0.45 16 Total: -1.00 -68.81 330.15 1.81 -67.00 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.03 Total: 12.47 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 3.63 Total: -42.99 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -3.38 Total: -78.88 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.52 Total: -11.54 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal Total: -68.81 1.81 -67.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336689678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.060 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds