Wall clock time and date at job start Mon Mar 30 2020 07:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47055 * 299.99769 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99692 * 3 2 1 7 7 C 1.37875 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99882 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99703 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47073 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46992 * 63.56346 * 12 11 10 14 14 C 1.47444 * 110.99915 * 55.26862 * 13 12 11 15 15 C 1.54365 * 107.25194 * 123.29488 * 14 13 12 16 16 C 1.55140 * 102.99563 * 22.22580 * 15 14 13 17 17 C 1.47847 * 111.00396 * 176.11111 * 13 12 11 18 18 H 1.09001 * 110.46317 * 332.51833 * 17 13 12 19 19 C 1.52997 * 110.37389 * 94.80690 * 17 13 12 20 20 C 1.54275 * 110.03268 * 294.73895 * 19 17 13 21 21 C 1.54961 * 104.15611 * 217.13554 * 20 19 17 22 22 C 1.54893 * 102.78035 * 37.89089 * 21 20 19 23 23 C 1.53875 * 110.03587 * 177.51970 * 19 17 13 24 24 H 0.97000 * 120.00627 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47227 * 59.99876 * 9 7 2 26 26 H 1.08995 * 109.47077 * 299.99611 * 9 7 2 27 27 H 1.09003 * 109.47034 * 60.00086 * 11 10 9 28 28 H 1.08991 * 109.47561 * 300.00168 * 11 10 9 29 29 H 1.09006 * 109.47393 * 303.56460 * 12 11 10 30 30 H 1.09000 * 109.47283 * 183.56106 * 12 11 10 31 31 H 1.09002 * 109.88920 * 242.66544 * 14 13 12 32 32 H 1.09003 * 109.89012 * 3.69112 * 14 13 12 33 33 H 1.09006 * 110.68711 * 263.86523 * 15 14 13 34 34 H 1.08997 * 110.74409 * 140.62162 * 15 14 13 35 35 H 1.09002 * 110.98553 * 206.28422 * 16 15 14 36 36 H 1.09005 * 110.98628 * 82.51487 * 16 15 14 37 37 H 1.09001 * 110.01581 * 56.12481 * 19 17 13 38 38 H 1.08995 * 110.48002 * 335.78093 * 20 19 17 39 39 H 1.08999 * 110.48672 * 98.42514 * 20 19 17 40 40 H 1.08996 * 110.72454 * 279.56648 * 21 20 19 41 41 H 1.09006 * 110.91741 * 156.29413 * 21 20 19 42 42 H 1.09000 * 110.47980 * 203.40411 * 22 21 20 43 43 H 1.08998 * 110.48789 * 80.75908 * 22 21 20 44 44 H 1.08992 * 110.03148 * 238.57192 * 23 19 17 45 45 H 1.09003 * 110.02777 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5651 -4.8754 0.0024 12 6 2.6480 -5.9562 0.0030 13 7 3.4301 -5.8649 1.2432 14 6 2.5547 -5.9440 2.4270 15 6 3.0544 -7.1238 3.2879 16 6 4.5275 -7.2901 2.8305 17 6 4.4276 -6.9533 1.3219 18 1 4.0874 -7.8234 0.7604 19 6 5.7809 -6.4748 0.7923 20 6 5.6766 -6.1568 -0.7137 21 6 7.0341 -6.6263 -1.2951 22 6 7.3239 -7.9171 -0.4895 23 6 6.8282 -7.5931 0.9350 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 0.9453 -4.9831 -0.8878 28 1 0.9445 -4.9818 0.8921 29 1 3.3066 -5.8112 -0.8534 30 1 2.1806 -6.9388 -0.0603 31 1 2.6174 -5.0171 2.9971 32 1 1.5248 -6.1186 2.1156 33 1 2.4806 -8.0259 3.0752 34 1 3.0056 -6.8759 4.3482 35 1 4.8694 -8.3142 2.9802 36 1 5.1784 -6.5840 3.3461 37 1 6.1036 -5.5890 1.3394 38 1 4.8555 -6.7136 -1.1651 39 1 5.5438 -5.0862 -0.8693 40 1 7.8081 -5.8792 -1.1193 41 1 6.9465 -6.8465 -2.3591 42 1 8.3929 -8.1301 -0.4821 43 1 6.7690 -8.7585 -0.9045 44 1 7.6595 -7.2498 1.5507 45 1 6.3721 -8.4769 1.3812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338921484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:44 Heat of formation + Delta-G solvation = -63.296471 kcal Electronic energy + Delta-G solvation = -21301.683140 eV Core-core repulsion = 18318.067814 eV Total energy + Delta-G solvation = -2983.615326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75047 -37.32627 -36.29378 -32.94665 -32.13703 -30.59208 -28.63825 -27.99119 -26.45865 -26.34838 -22.73201 -22.19506 -21.35930 -20.32064 -19.81138 -19.30092 -16.58403 -16.30340 -15.98701 -15.40825 -15.26349 -14.61704 -14.35746 -14.10414 -13.75652 -13.30791 -13.09316 -12.94210 -12.66914 -12.55326 -12.27628 -11.77618 -11.57646 -11.24861 -11.07551 -10.95997 -10.92626 -10.87210 -10.74191 -10.65821 -10.63985 -10.51801 -10.33053 -10.22507 -10.17742 -9.83338 -9.00902 -8.73013 -8.06699 -7.94281 -6.05042 -4.05574 3.33080 3.39377 3.46709 4.06966 4.40874 4.57821 4.64041 4.77656 4.82228 4.89501 5.00602 5.05779 5.30467 5.31647 5.43571 5.48043 5.54857 5.55085 5.61972 5.67819 5.69583 5.75506 5.80029 5.86350 5.90026 5.91779 5.94466 6.03216 6.10072 6.14400 6.17722 6.26864 6.32081 6.35021 6.40858 6.50880 6.60317 7.17389 7.31515 7.41457 7.50507 7.87536 8.23775 8.69206 9.09969 9.59228 11.06801 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.004501 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.330259 B = 6219.062751 C = 6940.514946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.377 6.377 11 C 0.062 3.938 12 C 0.052 3.948 13 N -0.506 5.506 14 C 0.042 3.958 15 C -0.143 4.143 16 C -0.123 4.123 17 C 0.080 3.920 18 H 0.048 0.952 19 C -0.073 4.073 20 C -0.116 4.116 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.120 4.120 24 H 0.262 0.738 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.144 -18.234 2.630 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.296 6.296 11 C -0.016 4.016 12 C -0.076 4.076 13 N -0.230 5.230 14 C -0.086 4.086 15 C -0.182 4.182 16 C -0.161 4.161 17 C -0.029 4.029 18 H 0.066 0.934 19 C -0.092 4.092 20 C -0.154 4.154 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.158 4.158 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.426 -17.586 2.616 20.611 hybrid contribution -0.597 0.105 -0.013 0.607 sum 9.829 -17.481 2.603 20.223 Atomic orbital electron populations 1.69975 1.06107 1.26896 1.51099 1.24940 0.94936 0.99379 0.95322 0.86312 0.80117 0.82727 0.77531 1.19446 1.20926 1.20918 1.21105 0.94121 0.89319 1.50037 0.91465 1.20175 0.88888 0.84019 0.95014 1.87960 1.34480 1.12213 1.94988 1.22368 0.93936 0.86476 0.98787 1.22438 0.95807 0.95571 0.93797 1.63427 1.14214 1.44041 1.01344 1.22871 0.95727 0.98352 0.91662 1.22814 0.96298 0.98639 1.00426 1.22740 0.96709 1.01161 0.95485 1.22681 0.92981 0.91901 0.95311 0.93373 1.21683 0.93058 0.97992 0.96508 1.22473 0.96275 1.02021 0.94605 1.22543 0.98017 0.96988 0.98955 1.22354 1.00221 0.97906 0.95692 1.22218 0.98269 0.98459 0.96849 0.92837 0.98096 0.98027 0.94515 0.94548 0.89523 0.94845 0.90195 0.92679 0.92030 0.90969 0.91413 0.90566 0.90240 0.91993 0.90650 0.91672 0.92015 0.92204 0.92086 0.92009 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -15.30 9.43 -34.44 -0.32 -15.62 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.45 5.69 36.01 0.20 5.66 16 10 O -0.38 -9.37 10.25 -35.23 -0.36 -9.73 16 11 C 0.06 1.20 5.81 37.16 0.22 1.42 16 12 C 0.05 0.82 4.84 -3.83 -0.02 0.80 16 13 N -0.51 -7.85 4.76 -223.35 -1.06 -8.92 16 14 C 0.04 0.60 6.10 -2.81 -0.02 0.59 16 15 C -0.14 -1.61 6.95 -24.88 -0.17 -1.78 16 16 C -0.12 -1.33 5.77 -24.60 -0.14 -1.48 16 17 C 0.08 0.99 1.80 -66.19 -0.12 0.87 16 18 H 0.05 0.59 7.71 -51.93 -0.40 0.19 16 19 C -0.07 -0.89 2.68 -89.50 -0.24 -1.13 16 20 C -0.12 -1.47 5.02 -25.03 -0.13 -1.60 16 21 C -0.13 -1.35 6.91 -24.70 -0.17 -1.52 16 22 C -0.12 -1.15 6.83 -25.07 -0.17 -1.33 16 23 C -0.12 -1.17 6.08 -25.61 -0.16 -1.32 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 26 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.69 6.12 -51.93 -0.32 0.37 16 29 H 0.09 1.38 5.49 -51.93 -0.29 1.10 16 30 H 0.03 0.46 8.00 -51.93 -0.42 0.04 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.80 6.02 -51.93 -0.31 0.49 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 36 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.78 6.26 -51.93 -0.32 0.46 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.55 6.91 -51.93 -0.36 0.20 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -31.38 342.72 -10.15 -41.53 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -8.27 Total: -3.66 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -1.33 Total: -14.92 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.33 Total: -35.64 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.36 Total: -9.73 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.38 -10.15 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338921484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.770 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds