Wall clock time and date at job start Mon Mar 30 2020 07:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47055 * 299.99769 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99692 * 3 2 1 7 7 C 1.37875 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99882 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99703 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47073 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.46992 * 63.56346 * 12 11 10 14 14 C 1.47444 * 110.99915 * 55.26862 * 13 12 11 15 15 C 1.54365 * 107.25194 * 123.29488 * 14 13 12 16 16 C 1.55140 * 102.99563 * 22.22580 * 15 14 13 17 17 C 1.47847 * 111.00396 * 176.11111 * 13 12 11 18 18 H 1.09001 * 110.46317 * 332.51833 * 17 13 12 19 19 C 1.52997 * 110.37389 * 94.80690 * 17 13 12 20 20 C 1.54275 * 110.03268 * 294.73895 * 19 17 13 21 21 C 1.54961 * 104.15611 * 217.13554 * 20 19 17 22 22 C 1.54893 * 102.78035 * 37.89089 * 21 20 19 23 23 C 1.53875 * 110.03587 * 177.51970 * 19 17 13 24 24 H 0.97000 * 120.00627 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47227 * 59.99876 * 9 7 2 26 26 H 1.08995 * 109.47077 * 299.99611 * 9 7 2 27 27 H 1.09003 * 109.47034 * 60.00086 * 11 10 9 28 28 H 1.08991 * 109.47561 * 300.00168 * 11 10 9 29 29 H 1.09006 * 109.47393 * 303.56460 * 12 11 10 30 30 H 1.09000 * 109.47283 * 183.56106 * 12 11 10 31 31 H 1.09002 * 109.88920 * 242.66544 * 14 13 12 32 32 H 1.09003 * 109.89012 * 3.69112 * 14 13 12 33 33 H 1.09006 * 110.68711 * 263.86523 * 15 14 13 34 34 H 1.08997 * 110.74409 * 140.62162 * 15 14 13 35 35 H 1.09002 * 110.98553 * 206.28422 * 16 15 14 36 36 H 1.09005 * 110.98628 * 82.51487 * 16 15 14 37 37 H 1.09001 * 110.01581 * 56.12481 * 19 17 13 38 38 H 1.08995 * 110.48002 * 335.78093 * 20 19 17 39 39 H 1.08999 * 110.48672 * 98.42514 * 20 19 17 40 40 H 1.08996 * 110.72454 * 279.56648 * 21 20 19 41 41 H 1.09006 * 110.91741 * 156.29413 * 21 20 19 42 42 H 1.09000 * 110.47980 * 203.40411 * 22 21 20 43 43 H 1.08998 * 110.48789 * 80.75908 * 22 21 20 44 44 H 1.08992 * 110.03148 * 238.57192 * 23 19 17 45 45 H 1.09003 * 110.02777 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0017 11 6 1.5651 -4.8754 0.0024 12 6 2.6480 -5.9562 0.0030 13 7 3.4301 -5.8649 1.2432 14 6 2.5547 -5.9440 2.4270 15 6 3.0544 -7.1238 3.2879 16 6 4.5275 -7.2901 2.8305 17 6 4.4276 -6.9533 1.3219 18 1 4.0874 -7.8234 0.7604 19 6 5.7809 -6.4748 0.7923 20 6 5.6766 -6.1568 -0.7137 21 6 7.0341 -6.6263 -1.2951 22 6 7.3239 -7.9171 -0.4895 23 6 6.8282 -7.5931 0.9350 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 0.9453 -4.9831 -0.8878 28 1 0.9445 -4.9818 0.8921 29 1 3.3066 -5.8112 -0.8534 30 1 2.1806 -6.9388 -0.0603 31 1 2.6174 -5.0171 2.9971 32 1 1.5248 -6.1186 2.1156 33 1 2.4806 -8.0259 3.0752 34 1 3.0056 -6.8759 4.3482 35 1 4.8694 -8.3142 2.9802 36 1 5.1784 -6.5840 3.3461 37 1 6.1036 -5.5890 1.3394 38 1 4.8555 -6.7136 -1.1651 39 1 5.5438 -5.0862 -0.8693 40 1 7.8081 -5.8792 -1.1193 41 1 6.9465 -6.8465 -2.3591 42 1 8.3929 -8.1301 -0.4821 43 1 6.7690 -8.7585 -0.9045 44 1 7.6595 -7.2498 1.5507 45 1 6.3721 -8.4769 1.3812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338921484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:44 Heat of formation + Delta-G solvation = -82.490802 kcal Electronic energy + Delta-G solvation = -21302.515468 eV Core-core repulsion = 18318.067814 eV Total energy + Delta-G solvation = -2984.447655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80730 -38.66711 -37.79316 -35.01172 -33.59121 -31.53984 -29.95443 -29.35624 -28.25621 -27.32119 -24.52732 -23.93096 -22.25191 -21.30817 -20.96983 -20.22960 -18.60800 -17.73500 -17.52408 -16.73152 -16.48810 -16.22637 -15.82324 -15.57230 -15.16013 -14.56815 -14.28782 -14.10187 -13.95662 -13.67851 -13.51597 -13.22732 -13.21422 -12.82411 -12.72515 -12.39051 -12.17208 -12.12877 -11.98333 -11.79886 -11.74249 -11.63067 -11.49305 -11.35354 -11.23251 -11.16759 -11.12938 -10.85492 -10.18082 -9.09234 -8.32701 -6.44534 1.38361 1.40042 1.55087 2.34471 2.95939 3.00884 3.24752 3.64140 3.70667 3.88862 3.96834 3.99148 4.06838 4.21764 4.27618 4.34009 4.47186 4.51987 4.60200 4.62636 4.67428 4.71790 4.81440 4.82245 4.89404 4.90707 4.97374 4.99685 5.02446 5.08742 5.10397 5.15545 5.17801 5.24080 5.34472 5.38353 5.46952 5.54006 5.55135 5.61576 5.96802 6.18075 6.28092 6.56493 6.85626 7.27801 8.80088 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.004501 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.330259 B = 6219.062751 C = 6940.514946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.210 3.790 10 O -0.392 6.392 11 C 0.053 3.947 12 C 0.062 3.938 13 N -0.535 5.535 14 C 0.038 3.962 15 C -0.133 4.133 16 C -0.117 4.117 17 C 0.080 3.920 18 H 0.060 0.940 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.271 0.729 25 H -0.017 1.017 26 H -0.019 1.019 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.456 -19.655 2.956 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.134 3.866 10 O -0.312 6.312 11 C -0.024 4.024 12 C -0.066 4.066 13 N -0.260 5.260 14 C -0.090 4.090 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.027 4.027 18 H 0.078 0.922 19 C -0.092 4.092 20 C -0.155 4.155 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.001 0.999 26 H -0.002 1.002 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.737 -19.034 2.945 22.555 hybrid contribution -1.060 0.522 -0.128 1.189 sum 10.677 -18.513 2.816 21.556 Atomic orbital electron populations 1.70073 1.07735 1.28546 1.50747 1.25943 0.95946 1.03312 0.93914 0.85151 0.78601 0.77360 0.78382 1.19033 1.19434 1.19543 1.21381 0.93919 0.90893 1.51926 0.92395 1.19786 0.88673 0.85090 0.93017 1.87923 1.34520 1.13713 1.95013 1.22716 0.95568 0.84884 0.99216 1.22320 0.94849 0.95295 0.94093 1.63336 1.15003 1.46353 1.01290 1.22819 0.95709 0.98655 0.91839 1.22765 0.96572 0.97587 1.00222 1.22737 0.96288 1.02559 0.93857 1.22760 0.91973 0.91195 0.96820 0.92166 1.21663 0.93918 0.98125 0.95507 1.22424 0.97742 0.99763 0.95602 1.22537 0.96461 0.97805 0.99592 1.22342 1.01321 0.97097 0.94844 1.22176 0.97584 0.97852 0.97489 0.92051 0.99943 1.00150 0.93791 0.94304 0.89994 0.91802 0.93240 0.93032 0.90259 0.90014 0.88545 0.91388 0.92824 0.91928 0.94229 0.92066 0.91338 0.90729 0.91171 0.91477 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 45.85 29.54 68.60 2.03 47.88 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -33.83 9.43 25.60 0.24 -33.59 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.38 5.69 71.24 0.41 12.78 16 10 O -0.39 -20.40 10.25 -148.98 -1.53 -21.93 16 11 C 0.05 2.11 5.81 71.98 0.42 2.53 16 12 C 0.06 1.96 4.84 86.30 0.42 2.38 16 13 N -0.54 -16.67 4.76 -860.56 -4.09 -20.76 16 14 C 0.04 1.10 6.10 86.66 0.53 1.63 16 15 C -0.13 -2.73 6.95 31.79 0.22 -2.51 16 16 C -0.12 -2.25 5.77 31.98 0.18 -2.07 16 17 C 0.08 1.88 1.80 45.38 0.08 1.96 16 18 H 0.06 1.29 7.71 -2.39 -0.02 1.27 16 19 C -0.07 -1.72 2.68 -10.07 -0.03 -1.75 16 20 C -0.12 -3.00 5.02 31.70 0.16 -2.84 16 21 C -0.13 -2.54 6.91 31.91 0.22 -2.32 16 22 C -0.12 -1.89 6.83 31.67 0.22 -1.67 16 23 C -0.11 -1.92 6.08 31.32 0.19 -1.73 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 26 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.52 6.12 -2.39 -0.01 1.50 16 29 H 0.08 2.65 5.49 -2.38 -0.01 2.63 16 30 H 0.06 1.63 8.00 -2.39 -0.02 1.61 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.50 6.02 -2.39 -0.01 1.49 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.36 7.67 -2.39 -0.02 1.34 16 36 H 0.07 1.44 8.06 -2.38 -0.02 1.42 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.56 6.26 -2.39 -0.01 1.54 16 39 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.10 6.91 -2.39 -0.02 1.08 16 Total: -1.00 -69.35 342.72 1.34 -68.02 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.93 Total: 10.30 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.72 Total: -26.32 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -3.81 Total: -77.94 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.53 Total: -21.93 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -69.35 1.34 -68.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338921484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.475 kcal (2) G-P(sol) polarization free energy of solvation -69.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds