Wall clock time and date at job start Mon Mar 30 2020 07:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99759 * 2 1 4 4 H 1.48497 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47217 * 299.99988 * 3 2 1 6 6 H 1.48504 * 109.47008 * 59.99935 * 3 2 1 7 7 C 1.37870 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99918 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00001 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46926 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47131 * 64.25540 * 12 11 10 14 14 C 1.47956 * 111.00092 * 175.78339 * 13 12 11 15 15 C 1.54125 * 107.20852 * 214.38370 * 14 13 12 16 16 C 1.53965 * 104.98434 * 1.51135 * 15 14 13 17 17 C 1.48930 * 111.19207 * 58.32706 * 13 12 11 18 18 C 1.52223 * 110.51142 * 263.10068 * 16 15 14 19 19 C 1.53128 * 109.56395 * 295.12939 * 18 16 15 20 20 C 1.53000 * 109.39865 * 301.17497 * 19 18 16 21 21 C 1.53015 * 109.59123 * 60.53093 * 20 19 18 22 22 C 1.52229 * 110.50221 * 139.57706 * 16 15 14 23 23 H 0.97002 * 120.00491 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47387 * 59.99926 * 9 7 2 25 25 H 1.08995 * 109.47145 * 299.99963 * 9 7 2 26 26 H 1.08998 * 109.47482 * 59.99803 * 11 10 9 27 27 H 1.08996 * 109.46628 * 299.99692 * 11 10 9 28 28 H 1.08999 * 109.47504 * 304.25283 * 12 11 10 29 29 H 1.09000 * 109.47036 * 184.25159 * 12 11 10 30 30 H 1.08995 * 109.92548 * 94.93132 * 14 13 12 31 31 H 1.09010 * 109.91695 * 333.82498 * 14 13 12 32 32 H 1.09000 * 110.34427 * 120.39412 * 15 14 13 33 33 H 1.09000 * 110.33859 * 242.53467 * 15 14 13 34 34 H 1.09004 * 110.52313 * 40.42241 * 17 13 12 35 35 H 1.08997 * 110.84970 * 277.43117 * 17 13 12 36 36 H 1.08993 * 109.46224 * 55.16247 * 18 16 15 37 37 H 1.09008 * 109.45448 * 175.10741 * 18 16 15 38 38 H 1.09002 * 109.48829 * 181.19148 * 19 18 16 39 39 H 1.09001 * 109.47898 * 61.14691 * 19 18 16 40 40 H 1.08998 * 109.45025 * 300.49603 * 20 19 18 41 41 H 1.09001 * 109.43447 * 180.55687 * 20 19 18 42 42 H 1.09004 * 109.47984 * 179.48290 * 21 20 19 43 43 H 1.09000 * 109.48393 * 59.43412 * 21 20 19 44 44 H 1.08998 * 109.45852 * 184.88563 * 22 16 15 45 45 H 1.09003 * 109.46188 * 304.85550 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6482 -5.9561 -0.0006 13 7 3.4198 -5.8767 1.2469 14 6 4.4122 -6.9712 1.3271 15 6 4.5267 -7.3751 2.8101 16 6 3.5180 -6.4750 3.5469 17 6 2.5388 -6.0412 2.4363 18 6 4.2196 -5.2607 4.1386 19 6 5.2057 -5.7141 5.2189 20 6 4.4502 -6.4776 6.3084 21 6 3.7772 -7.7093 5.6991 22 6 2.7841 -7.2650 4.6214 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5566 0.8902 26 1 0.9453 -4.9822 -0.8902 27 1 0.9448 -4.9826 0.8897 28 1 3.3139 -5.8029 -0.8500 29 1 2.1815 -6.9381 -0.0773 30 1 5.3784 -6.6242 0.9610 31 1 4.0749 -7.8224 0.7354 32 1 4.2623 -8.4247 2.9385 33 1 5.5372 -7.1923 3.1756 34 1 1.7938 -6.8162 2.2558 35 1 2.0565 -5.0987 2.6952 36 1 4.7598 -4.7341 3.3519 37 1 3.4795 -4.5930 4.5799 38 1 5.6919 -4.8422 5.6564 39 1 5.9582 -6.3652 4.7739 40 1 3.6916 -5.8290 6.7466 41 1 5.1501 -6.7921 7.0826 42 1 3.2472 -8.2568 6.4785 43 1 4.5344 -8.3537 5.2525 44 1 2.0156 -6.6373 5.0725 45 1 2.3189 -8.1428 4.1729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339004769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:03 Heat of formation + Delta-G solvation = -68.884231 kcal Electronic energy + Delta-G solvation = -21336.967875 eV Core-core repulsion = 18353.110246 eV Total energy + Delta-G solvation = -2983.857630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25640 -37.26872 -35.97866 -32.81976 -32.03422 -30.87309 -29.85571 -28.08560 -26.61473 -25.14731 -22.72337 -22.27818 -22.01531 -21.39256 -20.10824 -18.31137 -16.35447 -16.12578 -15.75843 -15.43927 -14.91925 -14.56219 -14.27150 -14.06751 -13.89761 -13.65372 -13.37133 -13.03912 -12.72407 -12.45236 -12.21485 -11.98426 -11.65533 -11.57379 -11.40062 -11.18627 -11.02250 -10.95956 -10.81642 -10.73659 -10.63574 -10.34719 -10.17621 -9.97007 -9.93492 -9.90395 -9.01213 -8.74425 -8.10069 -8.03728 -6.05167 -4.05781 3.33106 3.39389 3.46787 4.17234 4.40550 4.47736 4.63632 4.70891 4.87403 4.99231 5.07170 5.11423 5.23136 5.31494 5.33036 5.42608 5.47715 5.52890 5.56786 5.61767 5.67818 5.75697 5.81412 5.85034 5.90895 5.96598 5.99550 6.02677 6.11481 6.14433 6.16467 6.18511 6.27598 6.35005 6.39308 6.52728 6.60058 7.15373 7.17059 7.33769 7.49928 7.87351 8.23395 8.68566 9.09645 9.59054 11.06640 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004373 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.967288 B = 6401.126658 C = 7104.449561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.066 3.934 12 C 0.053 3.947 13 N -0.498 5.498 14 C 0.034 3.966 15 C -0.120 4.120 16 C -0.056 4.056 17 C 0.045 3.955 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.106 4.106 23 H 0.262 0.738 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.226 -17.526 9.404 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.298 6.298 11 C -0.013 4.013 12 C -0.075 4.075 13 N -0.222 5.222 14 C -0.094 4.094 15 C -0.158 4.158 16 C -0.057 4.057 17 C -0.083 4.083 18 C -0.138 4.138 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.144 4.144 23 H 0.072 0.928 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.530 -16.857 9.374 20.705 hybrid contribution -0.531 0.047 -0.146 0.553 sum 6.998 -16.810 9.227 20.413 Atomic orbital electron populations 1.69976 1.06103 1.26901 1.51078 1.24940 0.94938 0.99376 0.95303 0.86311 0.80125 0.82715 0.77538 1.19436 1.20928 1.20897 1.21107 0.94138 0.89320 1.50076 0.91453 1.20178 0.88874 0.83989 0.95047 1.87960 1.34572 1.12281 1.95005 1.22252 0.93849 0.86341 0.98819 1.22315 0.95969 0.95904 0.93292 1.64799 1.13530 1.42411 1.01481 1.22905 0.97666 0.92614 0.96180 1.22488 1.00085 0.98682 0.94552 1.20898 0.95039 0.95490 0.94243 1.23287 0.94351 1.00665 0.89989 1.21347 0.98282 0.96252 0.97906 1.21609 0.98137 0.99680 0.96336 1.21534 0.99400 0.97050 0.97709 1.21535 0.98500 0.97545 0.97821 1.21451 0.97752 0.99262 0.95909 0.92831 0.98074 0.97981 0.94429 0.94686 0.90097 0.94515 0.90656 0.94496 0.91923 0.90841 0.94386 0.89520 0.90460 0.91925 0.92162 0.92107 0.92066 0.92571 0.92433 0.92100 0.91761 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 8 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 9 C 0.19 5.47 5.69 36.00 0.20 5.67 16 10 O -0.38 -9.49 10.26 -35.23 -0.36 -9.85 16 11 C 0.07 1.27 5.89 37.16 0.22 1.49 16 12 C 0.05 0.85 5.23 -3.82 -0.02 0.83 16 13 N -0.50 -7.83 5.25 -230.39 -1.21 -9.04 16 14 C 0.03 0.43 6.70 -2.65 -0.02 0.41 16 15 C -0.12 -1.30 4.99 -25.64 -0.13 -1.43 16 16 C -0.06 -0.66 0.57 -154.12 -0.09 -0.75 16 17 C 0.04 0.64 4.21 -2.03 -0.01 0.63 16 18 C -0.10 -1.27 4.65 -27.06 -0.13 -1.40 16 19 C -0.12 -1.24 5.74 -26.66 -0.15 -1.39 16 20 C -0.12 -1.10 5.90 -26.72 -0.16 -1.26 16 21 C -0.12 -1.03 5.75 -26.66 -0.15 -1.18 16 22 C -0.11 -1.07 4.56 -27.06 -0.12 -1.19 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.66 6.71 -51.93 -0.35 0.31 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.04 0.50 7.98 -51.93 -0.41 0.08 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.43 7.67 -51.92 -0.40 0.03 16 32 H 0.06 0.60 7.68 -51.93 -0.40 0.21 16 33 H 0.07 0.75 6.12 -51.93 -0.32 0.44 16 34 H 0.04 0.51 7.89 -51.93 -0.41 0.10 16 35 H 0.09 1.46 7.51 -51.93 -0.39 1.07 16 36 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.60 6.44 -51.93 -0.33 0.26 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -31.46 341.72 -10.11 -41.57 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -8.43 Total: -4.68 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.97 Total: -13.71 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.47 Total: -35.74 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.36 Total: -9.85 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.46 -10.11 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339004769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.309 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds