Wall clock time and date at job start Mon Mar 30 2020 07:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99759 * 2 1 4 4 H 1.48497 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47217 * 299.99988 * 3 2 1 6 6 H 1.48504 * 109.47008 * 59.99935 * 3 2 1 7 7 C 1.37870 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99918 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00001 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46926 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47131 * 64.25540 * 12 11 10 14 14 C 1.47956 * 111.00092 * 175.78339 * 13 12 11 15 15 C 1.54125 * 107.20852 * 214.38370 * 14 13 12 16 16 C 1.53965 * 104.98434 * 1.51135 * 15 14 13 17 17 C 1.48930 * 111.19207 * 58.32706 * 13 12 11 18 18 C 1.52223 * 110.51142 * 263.10068 * 16 15 14 19 19 C 1.53128 * 109.56395 * 295.12939 * 18 16 15 20 20 C 1.53000 * 109.39865 * 301.17497 * 19 18 16 21 21 C 1.53015 * 109.59123 * 60.53093 * 20 19 18 22 22 C 1.52229 * 110.50221 * 139.57706 * 16 15 14 23 23 H 0.97002 * 120.00491 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47387 * 59.99926 * 9 7 2 25 25 H 1.08995 * 109.47145 * 299.99963 * 9 7 2 26 26 H 1.08998 * 109.47482 * 59.99803 * 11 10 9 27 27 H 1.08996 * 109.46628 * 299.99692 * 11 10 9 28 28 H 1.08999 * 109.47504 * 304.25283 * 12 11 10 29 29 H 1.09000 * 109.47036 * 184.25159 * 12 11 10 30 30 H 1.08995 * 109.92548 * 94.93132 * 14 13 12 31 31 H 1.09010 * 109.91695 * 333.82498 * 14 13 12 32 32 H 1.09000 * 110.34427 * 120.39412 * 15 14 13 33 33 H 1.09000 * 110.33859 * 242.53467 * 15 14 13 34 34 H 1.09004 * 110.52313 * 40.42241 * 17 13 12 35 35 H 1.08997 * 110.84970 * 277.43117 * 17 13 12 36 36 H 1.08993 * 109.46224 * 55.16247 * 18 16 15 37 37 H 1.09008 * 109.45448 * 175.10741 * 18 16 15 38 38 H 1.09002 * 109.48829 * 181.19148 * 19 18 16 39 39 H 1.09001 * 109.47898 * 61.14691 * 19 18 16 40 40 H 1.08998 * 109.45025 * 300.49603 * 20 19 18 41 41 H 1.09001 * 109.43447 * 180.55687 * 20 19 18 42 42 H 1.09004 * 109.47984 * 179.48290 * 21 20 19 43 43 H 1.09000 * 109.48393 * 59.43412 * 21 20 19 44 44 H 1.08998 * 109.45852 * 184.88563 * 22 16 15 45 45 H 1.09003 * 109.46188 * 304.85550 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6482 -5.9561 -0.0006 13 7 3.4198 -5.8767 1.2469 14 6 4.4122 -6.9712 1.3271 15 6 4.5267 -7.3751 2.8101 16 6 3.5180 -6.4750 3.5469 17 6 2.5388 -6.0412 2.4363 18 6 4.2196 -5.2607 4.1386 19 6 5.2057 -5.7141 5.2189 20 6 4.4502 -6.4776 6.3084 21 6 3.7772 -7.7093 5.6991 22 6 2.7841 -7.2650 4.6214 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5566 0.8902 26 1 0.9453 -4.9822 -0.8902 27 1 0.9448 -4.9826 0.8897 28 1 3.3139 -5.8029 -0.8500 29 1 2.1815 -6.9381 -0.0773 30 1 5.3784 -6.6242 0.9610 31 1 4.0749 -7.8224 0.7354 32 1 4.2623 -8.4247 2.9385 33 1 5.5372 -7.1923 3.1756 34 1 1.7938 -6.8162 2.2558 35 1 2.0565 -5.0987 2.6952 36 1 4.7598 -4.7341 3.3519 37 1 3.4795 -4.5930 4.5799 38 1 5.6919 -4.8422 5.6564 39 1 5.9582 -6.3652 4.7739 40 1 3.6916 -5.8290 6.7466 41 1 5.1501 -6.7921 7.0826 42 1 3.2472 -8.2568 6.4785 43 1 4.5344 -8.3537 5.2525 44 1 2.0156 -6.6373 5.0725 45 1 2.3189 -8.1428 4.1729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339004769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:02 Heat of formation + Delta-G solvation = -88.589594 kcal Electronic energy + Delta-G solvation = -21337.822364 eV Core-core repulsion = 18353.110246 eV Total energy + Delta-G solvation = -2984.712118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24910 -38.80293 -37.39014 -34.96061 -33.28641 -31.72912 -30.94682 -29.73317 -28.41372 -26.26380 -24.50418 -23.60861 -23.20839 -22.32423 -21.28029 -19.23793 -18.62741 -17.51955 -17.24691 -16.60928 -16.42910 -16.14880 -15.70387 -15.26979 -15.08426 -14.70669 -14.66583 -14.34458 -13.89451 -13.83576 -13.39044 -13.31121 -13.10314 -12.90398 -12.81041 -12.68997 -12.38494 -12.27169 -12.12089 -11.99557 -11.84409 -11.78617 -11.57137 -11.25818 -11.06362 -10.87157 -10.83893 -10.83221 -10.20701 -9.20327 -8.32826 -6.44847 1.38531 1.40281 1.55357 2.34487 3.00738 3.01967 3.23994 3.55408 3.69235 3.81353 4.04735 4.13848 4.25007 4.27784 4.29936 4.32744 4.42571 4.49238 4.53335 4.59822 4.65219 4.68003 4.74261 4.80915 4.83273 4.89838 4.92277 4.93876 5.02532 5.10042 5.16756 5.18668 5.27260 5.28997 5.32205 5.39854 5.45520 5.54845 5.60397 5.64762 5.96165 6.04570 6.17507 6.55640 6.84664 7.27480 8.79960 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004373 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.967288 B = 6401.126658 C = 7104.449561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.395 6.395 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.530 5.530 14 C 0.034 3.966 15 C -0.111 4.111 16 C -0.051 4.051 17 C 0.045 3.955 18 C -0.099 4.099 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.103 4.103 23 H 0.271 0.729 24 H -0.016 1.016 25 H -0.020 1.020 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 -18.830 10.101 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.314 6.314 11 C -0.021 4.021 12 C -0.066 4.066 13 N -0.255 5.255 14 C -0.093 4.093 15 C -0.149 4.149 16 C -0.052 4.052 17 C -0.082 4.082 18 C -0.137 4.137 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.141 4.141 23 H 0.080 0.920 24 H 0.001 0.999 25 H -0.002 1.002 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.766 -18.188 10.071 22.563 hybrid contribution -0.972 0.422 -0.381 1.126 sum 7.794 -17.767 9.691 21.687 Atomic orbital electron populations 1.70075 1.07749 1.28559 1.50706 1.25952 0.95953 1.03336 0.93879 0.85146 0.78629 0.77306 0.78382 1.18967 1.19416 1.19553 1.21389 0.93966 0.90879 1.51997 0.92320 1.19789 0.88662 0.85068 0.93036 1.87915 1.34664 1.13825 1.95029 1.22592 0.95537 0.84748 0.99182 1.22229 0.95054 0.95725 0.93596 1.64706 1.14431 1.44814 1.01532 1.22951 0.96488 0.92096 0.97791 1.22467 1.00059 0.99438 0.92926 1.20862 0.94816 0.95470 0.94048 1.23218 0.95079 0.99132 0.90787 1.21288 0.98194 0.96389 0.97833 1.21571 0.97718 1.00040 0.95908 1.21535 0.99449 0.97031 0.97583 1.21524 0.98381 0.97386 0.97641 1.21439 0.97789 0.99138 0.95768 0.92042 0.99859 1.00199 0.93549 0.94698 0.90360 0.91204 0.91023 0.92776 0.89672 0.90040 0.93203 0.93350 0.93406 0.94018 0.92357 0.90982 0.92928 0.90871 0.91025 0.90965 0.92840 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.44 0.28 -57.21 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 45.82 29.54 68.60 2.03 47.84 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -33.95 9.43 25.60 0.24 -33.70 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 12.42 5.69 71.24 0.41 12.83 16 10 O -0.39 -20.64 10.26 -148.98 -1.53 -22.17 16 11 C 0.06 2.25 5.89 71.98 0.42 2.68 16 12 C 0.06 1.94 5.23 86.30 0.45 2.39 16 13 N -0.53 -16.64 5.25 -882.83 -4.64 -21.28 16 14 C 0.03 0.80 6.70 86.48 0.58 1.38 16 15 C -0.11 -2.13 4.99 31.30 0.16 -1.98 16 16 C -0.05 -1.18 0.57 -51.93 -0.03 -1.20 16 17 C 0.05 1.33 4.21 86.34 0.36 1.69 16 18 C -0.10 -2.59 4.65 30.38 0.14 -2.45 16 19 C -0.12 -2.26 5.74 30.64 0.18 -2.08 16 20 C -0.12 -1.95 5.90 30.60 0.18 -1.77 16 21 C -0.11 -1.66 5.75 30.64 0.18 -1.48 16 22 C -0.10 -1.92 4.56 30.38 0.14 -1.78 16 23 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 25 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.38 6.71 -2.39 -0.02 1.36 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 1.73 7.98 -2.39 -0.02 1.71 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.09 7.67 -2.38 -0.02 1.07 16 32 H 0.08 1.30 7.68 -2.39 -0.02 1.28 16 33 H 0.08 1.46 6.12 -2.39 -0.01 1.44 16 34 H 0.05 1.31 7.89 -2.38 -0.02 1.29 16 35 H 0.05 1.75 7.51 -2.39 -0.02 1.73 16 36 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 37 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.26 6.44 -2.39 -0.02 1.25 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.94 7.38 -2.39 -0.02 0.93 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 Total: -1.00 -69.50 341.72 0.93 -68.57 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.92 Total: 8.85 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.87 Total: -24.60 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -4.35 Total: -78.49 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.53 Total: -22.17 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.50 0.93 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339004769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.017 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds