Wall clock time and date at job start Mon Mar 30 2020 07:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00147 * 2 1 4 4 H 1.48502 * 109.46857 * 270.00039 * 3 2 1 5 5 H 1.48502 * 109.47402 * 29.99547 * 3 2 1 6 6 H 1.48494 * 109.47407 * 150.00117 * 3 2 1 7 7 C 1.37875 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00065 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00139 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00197 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47191 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47014 * 65.00223 * 12 11 10 14 14 C 1.47904 * 111.00312 * 49.26868 * 13 12 11 15 15 C 1.54924 * 104.80950 * 146.24533 * 14 13 12 16 16 C 1.55184 * 101.67514 * 323.04866 * 15 14 13 17 17 C 1.47216 * 110.99800 * 170.00164 * 13 12 11 18 18 C 1.52774 * 110.03261 * 117.59396 * 17 13 12 19 19 C 1.53052 * 109.46241 * 179.13052 * 18 17 13 20 20 C 1.52996 * 109.44901 * 59.54047 * 19 18 17 21 21 C 1.53000 * 109.54339 * 299.76641 * 20 19 18 22 22 C 1.52762 * 110.05994 * 355.99808 * 17 13 12 23 23 H 0.96996 * 119.99759 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47192 * 59.99800 * 9 7 2 25 25 H 1.09000 * 109.46741 * 299.99956 * 9 7 2 26 26 H 1.09000 * 109.47027 * 59.99820 * 11 10 9 27 27 H 1.09001 * 109.47271 * 299.99977 * 11 10 9 28 28 H 1.08998 * 109.47151 * 305.00090 * 12 11 10 29 29 H 1.08998 * 109.47131 * 185.00365 * 12 11 10 30 30 H 1.09004 * 110.36786 * 265.07550 * 14 13 12 31 31 H 1.08995 * 110.37418 * 27.41244 * 14 13 12 32 32 H 1.09000 * 110.98519 * 81.14677 * 15 14 13 33 33 H 1.09002 * 110.98714 * 204.91664 * 15 14 13 34 34 H 1.09000 * 110.71752 * 277.13144 * 16 15 14 35 35 H 1.09002 * 110.71405 * 153.86036 * 16 15 14 36 36 H 1.09004 * 109.46908 * 299.11809 * 18 17 13 37 37 H 1.08990 * 109.47990 * 59.12998 * 18 17 13 38 38 H 1.09007 * 109.47319 * 299.55426 * 19 18 17 39 39 H 1.08996 * 109.48135 * 179.53944 * 19 18 17 40 40 H 1.09002 * 109.45740 * 179.74244 * 20 19 18 41 41 H 1.09005 * 109.45572 * 59.78775 * 20 19 18 42 42 H 1.09001 * 109.47349 * 300.24749 * 21 20 19 43 43 H 1.08991 * 109.48029 * 180.22929 * 21 20 19 44 44 H 1.09003 * 109.47435 * 300.84745 * 22 17 13 45 45 H 1.08996 * 109.47399 * 60.86024 * 22 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4123 -2.6543 0.0009 12 6 5.8068 -4.1326 0.0015 13 7 5.3675 -4.7570 -1.2535 14 6 5.7835 -3.9501 -2.4211 15 6 6.0761 -4.9866 -3.5347 16 6 6.7124 -6.1471 -2.7244 17 6 5.9319 -6.1092 -1.3957 18 6 4.8085 -7.1439 -1.4337 19 6 5.4082 -8.5417 -1.6035 20 6 6.3486 -8.8382 -0.4336 21 6 7.4766 -7.8047 -0.4092 22 6 6.8817 -6.4051 -0.2365 23 1 -0.4849 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6805 -0.8889 26 1 5.8151 -2.1708 0.8909 27 1 5.8151 -2.1707 -0.8890 28 1 5.3310 -4.6353 0.8435 29 1 6.8896 -4.2197 0.0911 30 1 4.9783 -3.2819 -2.7268 31 1 6.6827 -3.3802 -2.1875 32 1 5.1548 -5.3087 -4.0201 33 1 6.7804 -4.5873 -4.2645 34 1 7.7730 -5.9621 -2.5539 35 1 6.5627 -7.0997 -3.2326 36 1 4.2439 -7.1015 -0.5022 37 1 4.1447 -6.9292 -2.2710 38 1 5.9664 -8.5865 -2.5387 39 1 4.6075 -9.2810 -1.6224 40 1 6.7723 -9.8355 -0.5520 41 1 5.7911 -8.7894 0.5018 42 1 8.0318 -7.8505 -1.3461 43 1 8.1481 -8.0193 0.4221 44 1 7.6845 -5.6678 -0.2272 45 1 6.3332 -6.3570 0.7041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339059413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:00 Heat of formation + Delta-G solvation = -51.397337 kcal Electronic energy + Delta-G solvation = -21615.881962 eV Core-core repulsion = 18632.782621 eV Total energy + Delta-G solvation = -2983.099341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60403 -37.13491 -35.92459 -32.94563 -32.29723 -30.75591 -30.21311 -28.45243 -26.89547 -25.02065 -23.20995 -22.23650 -21.76613 -21.54113 -19.83017 -18.02927 -16.77783 -16.51561 -15.89567 -15.49525 -15.03589 -14.81415 -14.42603 -14.24043 -13.93572 -13.65114 -13.15271 -12.89596 -12.68242 -12.59975 -12.34006 -12.11501 -11.94213 -11.71537 -11.34334 -11.22069 -11.05988 -10.93285 -10.86480 -10.73831 -10.67306 -10.45278 -10.30854 -10.12501 -10.01444 -9.81516 -9.11364 -8.77169 -8.39038 -7.93760 -6.06564 -4.04709 3.27090 3.33899 3.35609 3.99314 4.39404 4.50086 4.61518 4.71801 4.79689 4.84737 4.95135 5.03165 5.17856 5.24659 5.28640 5.36168 5.40190 5.47936 5.50214 5.57374 5.59484 5.63265 5.73179 5.78895 5.81877 5.88749 5.93873 5.99198 6.00792 6.08790 6.12164 6.16133 6.23974 6.24931 6.36152 6.41886 6.51163 6.65664 7.05323 7.29979 7.36755 7.65889 8.11292 8.74500 9.07183 9.53362 11.06713 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.004110 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.714918 B = 6810.957680 C = 6913.049580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.364 6.364 11 C 0.055 3.945 12 C 0.053 3.947 13 N -0.504 5.504 14 C 0.044 3.956 15 C -0.131 4.131 16 C -0.134 4.134 17 C 0.104 3.896 18 C -0.095 4.095 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.131 4.131 23 H 0.265 0.735 24 H -0.001 1.001 25 H -0.005 1.005 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.672 -14.914 -3.982 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.282 6.282 11 C -0.023 4.023 12 C -0.075 4.075 13 N -0.228 5.228 14 C -0.084 4.084 15 C -0.169 4.169 16 C -0.172 4.172 17 C 0.014 3.986 18 C -0.133 4.133 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.169 4.169 23 H 0.075 0.925 24 H 0.017 0.983 25 H 0.013 0.987 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.821 -14.949 -3.943 22.847 hybrid contribution 1.442 1.378 0.043 1.995 sum 18.263 -13.571 -3.900 23.085 Atomic orbital electron populations 1.69882 1.06033 1.26953 1.50692 1.24764 0.94777 0.98653 0.94795 0.86865 0.80341 0.83915 0.78700 1.19997 1.20830 1.19201 1.20904 0.88316 0.95293 1.50678 0.89892 1.20578 0.96207 0.80021 0.93989 1.88029 1.16730 1.28614 1.94855 1.22490 0.85826 0.95008 0.98938 1.22406 0.97194 0.94400 0.93481 1.63567 1.56984 1.00723 1.01491 1.23074 0.99302 0.95985 0.90021 1.22725 1.00878 0.95873 0.97416 1.22954 0.98880 0.99427 0.95981 1.21530 0.92907 0.90266 0.93865 1.21401 0.96923 0.92085 1.02902 1.21658 0.98749 0.97221 0.98294 1.21529 0.96893 0.98132 0.99113 1.21534 0.97632 0.94731 1.01509 1.22101 0.98812 0.96707 0.99307 0.92454 0.98295 0.98715 0.94307 0.94400 0.89969 0.93549 0.89624 0.94145 0.90664 0.91336 0.91848 0.90567 0.91514 0.91474 0.91990 0.92040 0.92441 0.91961 0.92064 0.92307 0.91951 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -15.67 9.99 -34.44 -0.34 -16.01 16 8 H 0.08 2.78 8.06 -52.48 -0.42 2.36 16 9 C 0.17 4.38 4.76 36.00 0.17 4.55 16 10 O -0.36 -8.75 10.27 -35.23 -0.36 -9.12 16 11 C 0.06 1.01 5.74 37.16 0.21 1.22 16 12 C 0.05 0.80 4.29 -3.82 -0.02 0.79 16 13 N -0.50 -7.68 4.89 -216.24 -1.06 -8.74 16 14 C 0.04 0.62 5.22 -2.26 -0.01 0.61 16 15 C -0.13 -1.50 7.08 -24.56 -0.17 -1.68 16 16 C -0.13 -1.40 4.72 -24.98 -0.12 -1.52 16 17 C 0.10 1.25 0.86 -131.07 -0.11 1.14 16 18 C -0.09 -1.15 5.06 -26.82 -0.14 -1.28 16 19 C -0.12 -1.14 5.70 -26.71 -0.15 -1.30 16 20 C -0.12 -1.04 5.91 -26.73 -0.16 -1.20 16 21 C -0.12 -1.02 5.71 -26.70 -0.15 -1.17 16 22 C -0.13 -1.39 3.30 -26.82 -0.09 -1.48 16 23 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 24 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 25 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.66 6.30 -51.93 -0.33 0.33 16 28 H 0.08 1.30 7.35 -51.93 -0.38 0.92 16 29 H 0.05 0.59 5.84 -51.93 -0.30 0.29 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.04 0.54 7.06 -51.93 -0.37 0.17 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 35 H 0.08 0.72 5.81 -51.93 -0.30 0.42 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.54 6.16 -51.93 -0.32 0.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.51 7.11 -51.93 -0.37 0.14 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.65 6.52 -51.93 -0.34 0.31 16 45 H 0.07 0.82 6.93 -51.93 -0.36 0.46 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -32.05 330.39 -9.56 -41.61 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -8.05 Total: -3.19 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.18 Total: -15.28 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.28 Total: -36.13 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.36 Total: -9.12 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.05 -9.56 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339059413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.784 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds