Wall clock time and date at job start Mon Mar 30 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00147 * 2 1 4 4 H 1.48502 * 109.46857 * 270.00039 * 3 2 1 5 5 H 1.48502 * 109.47402 * 29.99547 * 3 2 1 6 6 H 1.48494 * 109.47407 * 150.00117 * 3 2 1 7 7 C 1.37875 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00065 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00139 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00197 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47191 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47014 * 65.00223 * 12 11 10 14 14 C 1.47904 * 111.00312 * 49.26868 * 13 12 11 15 15 C 1.54924 * 104.80950 * 146.24533 * 14 13 12 16 16 C 1.55184 * 101.67514 * 323.04866 * 15 14 13 17 17 C 1.47216 * 110.99800 * 170.00164 * 13 12 11 18 18 C 1.52774 * 110.03261 * 117.59396 * 17 13 12 19 19 C 1.53052 * 109.46241 * 179.13052 * 18 17 13 20 20 C 1.52996 * 109.44901 * 59.54047 * 19 18 17 21 21 C 1.53000 * 109.54339 * 299.76641 * 20 19 18 22 22 C 1.52762 * 110.05994 * 355.99808 * 17 13 12 23 23 H 0.96996 * 119.99759 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47192 * 59.99800 * 9 7 2 25 25 H 1.09000 * 109.46741 * 299.99956 * 9 7 2 26 26 H 1.09000 * 109.47027 * 59.99820 * 11 10 9 27 27 H 1.09001 * 109.47271 * 299.99977 * 11 10 9 28 28 H 1.08998 * 109.47151 * 305.00090 * 12 11 10 29 29 H 1.08998 * 109.47131 * 185.00365 * 12 11 10 30 30 H 1.09004 * 110.36786 * 265.07550 * 14 13 12 31 31 H 1.08995 * 110.37418 * 27.41244 * 14 13 12 32 32 H 1.09000 * 110.98519 * 81.14677 * 15 14 13 33 33 H 1.09002 * 110.98714 * 204.91664 * 15 14 13 34 34 H 1.09000 * 110.71752 * 277.13144 * 16 15 14 35 35 H 1.09002 * 110.71405 * 153.86036 * 16 15 14 36 36 H 1.09004 * 109.46908 * 299.11809 * 18 17 13 37 37 H 1.08990 * 109.47990 * 59.12998 * 18 17 13 38 38 H 1.09007 * 109.47319 * 299.55426 * 19 18 17 39 39 H 1.08996 * 109.48135 * 179.53944 * 19 18 17 40 40 H 1.09002 * 109.45740 * 179.74244 * 20 19 18 41 41 H 1.09005 * 109.45572 * 59.78775 * 20 19 18 42 42 H 1.09001 * 109.47349 * 300.24749 * 21 20 19 43 43 H 1.08991 * 109.48029 * 180.22929 * 21 20 19 44 44 H 1.09003 * 109.47435 * 300.84745 * 22 17 13 45 45 H 1.08996 * 109.47399 * 60.86024 * 22 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4123 -2.6543 0.0009 12 6 5.8068 -4.1326 0.0015 13 7 5.3675 -4.7570 -1.2535 14 6 5.7835 -3.9501 -2.4211 15 6 6.0761 -4.9866 -3.5347 16 6 6.7124 -6.1471 -2.7244 17 6 5.9319 -6.1092 -1.3957 18 6 4.8085 -7.1439 -1.4337 19 6 5.4082 -8.5417 -1.6035 20 6 6.3486 -8.8382 -0.4336 21 6 7.4766 -7.8047 -0.4092 22 6 6.8817 -6.4051 -0.2365 23 1 -0.4849 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6805 -0.8889 26 1 5.8151 -2.1708 0.8909 27 1 5.8151 -2.1707 -0.8890 28 1 5.3310 -4.6353 0.8435 29 1 6.8896 -4.2197 0.0911 30 1 4.9783 -3.2819 -2.7268 31 1 6.6827 -3.3802 -2.1875 32 1 5.1548 -5.3087 -4.0201 33 1 6.7804 -4.5873 -4.2645 34 1 7.7730 -5.9621 -2.5539 35 1 6.5627 -7.0997 -3.2326 36 1 4.2439 -7.1015 -0.5022 37 1 4.1447 -6.9292 -2.2710 38 1 5.9664 -8.5865 -2.5387 39 1 4.6075 -9.2810 -1.6224 40 1 6.7723 -9.8355 -0.5520 41 1 5.7911 -8.7894 0.5018 42 1 8.0318 -7.8505 -1.3461 43 1 8.1481 -8.0193 0.4221 44 1 7.6845 -5.6678 -0.2272 45 1 6.3332 -6.3570 0.7041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339059413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:59 Heat of formation + Delta-G solvation = -72.692084 kcal Electronic energy + Delta-G solvation = -21616.805371 eV Core-core repulsion = 18632.782621 eV Total energy + Delta-G solvation = -2984.022750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57434 -38.72291 -37.03759 -34.93229 -33.71294 -31.63930 -31.16956 -30.27187 -28.44580 -25.97785 -24.30205 -23.90377 -23.19879 -22.40859 -20.92244 -19.10764 -18.86379 -17.69404 -17.30305 -16.77301 -16.47471 -16.25230 -15.78042 -15.37528 -15.06168 -14.74765 -14.65536 -14.41345 -13.95366 -13.59711 -13.46820 -13.35621 -13.14685 -13.03650 -12.80487 -12.63561 -12.30140 -12.13272 -11.97916 -11.86248 -11.82580 -11.70579 -11.55185 -11.35676 -11.22590 -11.01557 -10.93987 -10.87429 -10.31038 -9.02132 -8.38023 -6.45866 1.31015 1.34746 1.45685 2.28336 2.92628 2.94278 3.14970 3.59958 3.76566 3.87934 3.99810 4.12731 4.17931 4.23529 4.26163 4.35673 4.42421 4.43071 4.49530 4.53374 4.59780 4.60231 4.65793 4.73688 4.82381 4.90023 4.94309 4.97807 5.02287 5.02957 5.10672 5.18648 5.25161 5.30359 5.30577 5.34120 5.39222 5.43394 5.55772 5.60442 5.93775 6.23083 6.31922 6.58464 6.79327 7.18883 8.79600 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.004110 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.714918 B = 6810.957680 C = 6913.049580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.544 4.544 8 H 0.026 0.974 9 C 0.180 3.820 10 O -0.393 6.393 11 C 0.047 3.953 12 C 0.061 3.939 13 N -0.538 5.538 14 C 0.042 3.958 15 C -0.126 4.126 16 C -0.124 4.124 17 C 0.101 3.899 18 C -0.095 4.095 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.128 4.128 23 H 0.273 0.727 24 H 0.010 0.990 25 H 0.006 0.994 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.240 -14.661 -4.459 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.582 4.582 8 H 0.044 0.956 9 C 0.104 3.896 10 O -0.313 6.313 11 C -0.030 4.030 12 C -0.066 4.066 13 N -0.262 5.262 14 C -0.086 4.086 15 C -0.164 4.164 16 C -0.162 4.162 17 C 0.012 3.988 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.166 4.166 23 H 0.082 0.918 24 H 0.027 0.973 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.402 -14.728 -4.419 25.547 hybrid contribution 0.224 1.192 0.198 1.229 sum 20.625 -13.536 -4.222 25.029 Atomic orbital electron populations 1.70042 1.08295 1.28779 1.51162 1.25859 0.95810 1.03417 0.93408 0.85583 0.79391 0.77395 0.79799 1.18361 1.19614 1.16982 1.21154 0.91030 0.93724 1.52265 0.95568 1.20274 0.93271 0.81406 0.94631 1.87987 1.20728 1.27472 1.95084 1.22857 0.82529 0.97512 1.00120 1.22339 0.98808 0.92213 0.93279 1.63452 1.58721 1.02379 1.01697 1.23003 0.98356 0.96375 0.90821 1.22700 1.01084 0.95577 0.97024 1.22925 0.99274 0.99535 0.94480 1.21608 0.93189 0.88284 0.95749 1.21394 0.96934 0.94379 1.00670 1.21617 0.99105 0.95139 0.99407 1.21533 0.96703 0.99254 0.98110 1.21519 0.97592 0.93092 1.02694 1.22055 0.98382 0.98383 0.97799 0.91779 0.97270 0.97606 0.92708 0.93319 0.91360 0.90252 0.93235 0.92876 0.91840 0.89135 0.90137 0.89180 0.94160 0.93398 0.90553 0.91793 0.90567 0.93057 0.90768 0.91093 0.91198 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.97 13.96 21.45 0.30 -60.67 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.96 44.51 27.47 68.60 1.88 46.40 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.54 -34.58 9.99 25.60 0.26 -34.32 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 9 C 0.18 9.47 4.76 71.23 0.34 9.81 16 10 O -0.39 -19.45 10.27 -148.98 -1.53 -20.98 16 11 C 0.05 1.67 5.74 71.98 0.41 2.08 16 12 C 0.06 1.82 4.29 86.31 0.37 2.19 16 13 N -0.54 -16.48 4.89 -838.06 -4.10 -20.58 16 14 C 0.04 1.18 5.22 86.77 0.45 1.64 16 15 C -0.13 -2.71 7.08 32.00 0.23 -2.49 16 16 C -0.12 -2.27 4.72 31.73 0.15 -2.12 16 17 C 0.10 2.33 0.86 3.70 0.00 2.33 16 18 C -0.10 -2.35 5.06 30.54 0.15 -2.19 16 19 C -0.11 -2.00 5.70 30.61 0.17 -1.83 16 20 C -0.12 -1.82 5.91 30.59 0.18 -1.64 16 21 C -0.11 -1.61 5.71 30.61 0.17 -1.44 16 22 C -0.13 -2.47 3.30 30.53 0.10 -2.36 16 23 H 0.27 16.13 8.31 -92.71 -0.77 15.35 16 24 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 25 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.63 6.30 -2.39 -0.02 1.61 16 28 H 0.07 2.20 7.35 -2.39 -0.02 2.18 16 29 H 0.08 1.84 5.84 -2.39 -0.01 1.82 16 30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.05 1.33 7.06 -2.39 -0.02 1.31 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.24 7.60 -2.39 -0.02 1.22 16 35 H 0.09 1.42 5.81 -2.39 -0.01 1.41 16 36 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.13 6.16 -2.38 -0.01 1.11 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.07 0.92 7.11 -2.39 -0.02 0.91 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 1.24 6.52 -2.39 -0.02 1.22 16 45 H 0.06 1.25 6.93 -2.39 -0.02 1.23 16 Total: -1.00 -73.12 330.39 0.89 -72.23 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.88 Total: 12.70 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 3.46 Total: -29.09 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -3.80 Total: -81.26 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.53 Total: -20.98 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -73.12 0.89 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339059413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.467 kcal (2) G-P(sol) polarization free energy of solvation -73.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds