Wall clock time and date at job start Mon Mar 30 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.58124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47156 * 145.04254 * 5 4 3 7 7 C 1.53002 * 109.47090 * 265.04331 * 5 4 3 8 8 N 1.46901 * 109.47198 * 25.04647 * 5 4 3 9 9 C 1.46893 * 111.00424 * 154.99875 * 8 5 4 10 10 C 1.52999 * 109.47447 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.46480 * 65.00205 * 10 9 8 12 12 C 1.42903 * 113.99822 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47347 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00077 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99817 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99748 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00381 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47163 * 89.99965 * 17 15 13 19 19 H 1.48504 * 109.47366 * 210.00118 * 17 15 13 20 20 H 1.48501 * 109.46770 * 330.00047 * 17 15 13 21 21 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 22 22 C 1.50695 * 125.79226 * 179.97438 * 21 4 3 23 23 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 26 26 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 27 27 H 1.08007 * 126.58064 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46694 * 180.02562 * 7 5 4 29 29 H 1.08996 * 109.46984 * 299.99464 * 7 5 4 30 30 H 1.08996 * 109.46760 * 60.00070 * 7 5 4 31 31 H 1.00904 * 110.99630 * 278.95423 * 8 5 4 32 32 H 1.09004 * 109.47191 * 300.00430 * 9 8 5 33 33 H 1.09001 * 109.47012 * 59.99651 * 9 8 5 34 34 H 1.08994 * 109.47368 * 184.99799 * 10 9 8 35 35 H 1.08998 * 109.47243 * 305.00115 * 10 9 8 36 36 H 1.09002 * 109.47114 * 300.00394 * 12 11 10 37 37 H 1.09006 * 109.46789 * 59.99683 * 12 11 10 38 38 H 0.97000 * 119.99923 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47797 * 179.97438 * 22 21 4 40 40 H 1.09006 * 109.47078 * 299.99936 * 22 21 4 41 41 H 1.09005 * 109.47246 * 59.99506 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0014 6 1 5.6498 0.9964 0.5871 7 6 5.3635 1.6707 -1.4388 8 7 4.5670 2.7967 0.5849 9 6 5.7748 3.4183 1.1440 10 6 5.4169 4.7798 1.7435 11 8 4.5379 4.5945 2.8549 12 6 4.1408 5.8110 3.4909 13 6 3.2199 5.4986 4.6422 14 1 2.9638 4.4736 4.8660 15 6 2.7043 6.5214 5.4096 16 7 1.9010 6.2488 6.4146 17 14 3.1466 8.2944 5.0219 18 1 2.1608 8.8519 4.0614 19 1 3.1259 9.0947 6.2727 20 1 4.5047 8.3462 4.4235 21 6 3.5814 -0.7122 -0.0015 22 6 4.7705 -1.6379 -0.0030 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5135 -0.8901 27 1 1.9665 2.1205 -0.0004 28 1 6.2623 2.2872 -1.4392 29 1 5.5907 0.6974 -1.8737 30 1 4.5869 2.1593 -2.0272 31 1 4.1292 3.4024 -0.0930 32 1 6.1875 2.7756 1.9217 33 1 6.5134 3.5525 0.3538 34 1 6.3257 5.2795 2.0784 35 1 4.9234 5.3911 0.9879 36 1 5.0234 6.3319 3.8621 37 1 3.6210 6.4441 2.7717 38 1 1.5385 6.9683 6.9547 39 1 4.4260 -2.6720 -0.0030 40 1 5.3723 -1.4549 -0.8933 41 1 5.3735 -1.4561 0.8867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339085238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:36 Heat of formation + Delta-G solvation = -65.726812 kcal Electronic energy + Delta-G solvation = -20179.722031 eV Core-core repulsion = 17060.168223 eV Total energy + Delta-G solvation = -3119.553808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.50000 -39.06334 -37.81886 -34.95796 -34.18334 -33.81129 -31.63687 -30.26957 -29.98069 -28.06940 -25.70468 -24.04138 -23.85423 -23.00853 -21.72993 -20.11229 -19.03552 -17.51389 -17.42046 -17.18923 -16.78823 -16.53337 -15.85739 -15.57646 -15.24085 -14.68756 -14.57696 -14.28524 -14.22641 -14.01768 -13.93662 -13.59519 -13.50351 -13.44695 -13.16366 -13.09232 -12.78622 -12.75791 -12.57484 -12.34032 -12.02234 -11.88827 -11.78574 -11.30743 -10.91575 -10.43418 -10.28941 -9.24296 -8.97456 -8.36403 -6.44209 0.82200 1.32729 1.36600 1.47506 1.71311 2.09220 2.30020 2.96028 3.12520 3.22889 3.81845 3.91359 4.10123 4.18831 4.28015 4.35438 4.38769 4.43928 4.49937 4.55158 4.57575 4.64615 4.68814 4.70632 4.77017 4.84359 4.89261 4.95722 5.02134 5.05082 5.10466 5.19446 5.28070 5.44497 5.45725 5.71246 5.96128 6.19704 6.32405 6.51941 6.60493 6.83538 7.20764 8.81303 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.004118 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.049603 B = 6798.269074 C = 7709.448144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.204 4.204 4 C -0.170 4.170 5 C 0.158 3.842 6 H 0.085 0.915 7 C -0.166 4.166 8 N -0.693 5.693 9 C 0.074 3.926 10 C 0.050 3.950 11 O -0.396 6.396 12 C 0.179 3.821 13 C -0.544 4.544 14 H 0.024 0.976 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.959 3.041 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.245 1.245 21 C -0.037 4.037 22 C -0.068 4.068 23 O -0.191 6.191 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.138 0.862 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.342 0.658 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.273 0.727 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 -10.983 -19.860 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.223 4.223 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.103 0.897 7 C -0.225 4.225 8 N -0.324 5.324 9 C -0.055 4.055 10 C -0.027 4.027 11 O -0.315 6.315 12 C 0.103 3.897 13 C -0.582 4.582 14 H 0.043 0.957 15 C -0.186 4.186 16 N -0.584 5.584 17 Si 0.780 3.220 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.168 1.168 21 C -0.087 4.087 22 C -0.124 4.124 23 O -0.089 6.089 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.156 0.844 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.026 0.974 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.653 -11.645 -19.043 23.292 hybrid contribution 0.136 1.347 -0.323 1.392 sum 6.789 -10.298 -19.365 22.960 Atomic orbital electron populations 1.20380 0.83199 1.04607 1.04366 1.22911 0.95262 0.83851 1.06885 1.21480 0.93001 0.99429 1.08438 1.20317 0.95852 0.93186 1.07841 1.19804 0.92044 0.88587 0.94786 0.89668 1.22367 1.01343 1.03138 0.95617 1.60216 1.27427 1.04581 1.40224 1.21932 0.91371 0.93878 0.98306 1.22713 0.93389 0.97723 0.88845 1.87991 1.66284 1.31413 1.45851 1.20283 0.93607 0.84394 0.91379 1.21176 1.28910 0.94258 1.13850 0.95729 1.25880 0.93947 1.04820 0.93950 1.70048 1.33399 1.34994 1.19982 0.85563 0.80446 0.77274 0.78737 1.18387 1.19762 1.16804 1.22726 0.83816 0.94644 1.07510 1.20417 0.90208 0.97265 1.04510 1.83922 1.16900 1.35451 1.72617 0.89666 0.89788 0.88215 0.84369 0.91093 0.90849 0.92826 0.83889 0.91441 0.90675 0.92324 0.93322 0.97149 0.97414 0.91824 0.89842 0.87960 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.42 71.23 0.74 -0.66 16 2 C -0.04 -1.12 7.32 24.83 0.18 -0.94 16 3 C -0.20 -6.26 10.26 22.19 0.23 -6.03 16 4 C -0.17 -4.78 5.26 -19.94 -0.10 -4.88 16 5 C 0.16 3.78 2.79 44.17 0.12 3.90 16 6 H 0.09 1.96 7.68 -2.39 -0.02 1.94 16 7 C -0.17 -2.88 9.14 71.98 0.66 -2.23 16 8 N -0.69 -20.12 5.78 -495.45 -2.86 -22.98 16 9 C 0.07 2.01 5.87 86.30 0.51 2.51 16 10 C 0.05 1.69 6.22 71.98 0.45 2.14 16 11 O -0.40 -19.17 10.27 -148.98 -1.53 -20.70 16 12 C 0.18 9.30 4.76 71.24 0.34 9.63 16 13 C -0.54 -34.43 9.99 25.60 0.26 -34.17 16 14 H 0.02 1.77 8.06 -2.91 -0.02 1.74 16 15 C 0.01 0.70 5.47 84.65 0.46 1.17 16 16 N -0.94 -60.97 13.96 21.45 0.30 -60.67 16 17 Si 0.96 44.19 27.47 68.60 1.88 46.08 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.24 -10.34 6.54 99.48 0.65 -9.68 16 21 C -0.04 -0.96 7.32 24.83 0.18 -0.78 16 22 C -0.07 -1.11 10.03 71.23 0.71 -0.39 16 23 O -0.19 -5.50 10.65 -2.47 -0.03 -5.53 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.07 1.03 7.45 -2.39 -0.02 1.02 16 29 H 0.07 1.08 8.05 -2.39 -0.02 1.06 16 30 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.34 9.31 8.47 -89.69 -0.76 8.55 16 32 H 0.07 1.99 8.06 -2.38 -0.02 1.97 16 33 H 0.08 1.46 7.44 -2.39 -0.02 1.44 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 37 H 0.01 0.40 7.57 -2.38 -0.02 0.38 16 38 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.19 8.05 -2.38 -0.02 1.17 16 41 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -77.98 343.24 2.69 -75.29 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.19 Total: 19.23 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 4.74 Total: -30.74 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.56 Total: -83.64 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.56 Total: -26.22 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Total: -77.98 2.69 -75.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339085238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.565 kcal (2) G-P(sol) polarization free energy of solvation -77.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds