Wall clock time and date at job start Mon Mar 30 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48504 * 109.47379 * 269.99580 * 3 2 1 5 5 H 1.48492 * 109.47335 * 30.00002 * 3 2 1 6 6 H 1.48499 * 109.46999 * 149.99952 * 3 2 1 7 7 C 1.37873 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00223 * 179.97438 * 7 2 1 10 10 O 1.42894 * 109.47080 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00040 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47328 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46808 * 65.00049 * 12 11 10 14 14 C 1.46836 * 111.00210 * 293.95266 * 13 12 11 15 15 C 1.53039 * 109.60887 * 186.12242 * 14 13 12 16 16 C 1.53190 * 109.22615 * 300.49427 * 15 14 13 17 17 C 1.52772 * 109.15967 * 57.07235 * 16 15 14 18 18 C 1.53957 * 109.80642 * 182.08678 * 17 16 15 19 19 C 1.54956 * 104.13131 * 217.34061 * 18 17 16 20 20 C 1.54927 * 102.78745 * 37.66782 * 19 18 17 21 21 C 1.53587 * 109.97317 * 64.70961 * 17 16 15 22 22 C 1.46916 * 111.00335 * 58.12734 * 13 12 11 23 23 H 0.97001 * 120.00204 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46536 * 60.00217 * 9 7 2 25 25 H 1.08994 * 109.46916 * 300.00322 * 9 7 2 26 26 H 1.08998 * 109.47032 * 59.99766 * 11 10 9 27 27 H 1.09002 * 109.46863 * 300.00029 * 11 10 9 28 28 H 1.08992 * 109.47374 * 305.00071 * 12 11 10 29 29 H 1.09001 * 109.46904 * 185.00002 * 12 11 10 30 30 H 1.08993 * 109.45072 * 66.08216 * 14 13 12 31 31 H 1.08998 * 109.42426 * 306.14882 * 14 13 12 32 32 H 1.09001 * 109.51619 * 180.56540 * 15 14 13 33 33 H 1.09000 * 109.55752 * 60.44480 * 15 14 13 34 34 H 1.08997 * 109.52503 * 297.16728 * 16 15 14 35 35 H 1.09009 * 109.57508 * 177.00551 * 16 15 14 36 36 H 1.09003 * 110.49996 * 336.00664 * 18 17 16 37 37 H 1.09001 * 110.49793 * 98.67924 * 18 17 16 38 38 H 1.08999 * 110.74689 * 279.34421 * 19 18 17 39 39 H 1.09000 * 110.74931 * 155.99058 * 19 18 17 40 40 H 1.09005 * 110.48130 * 203.54225 * 20 19 18 41 41 H 1.08996 * 110.59595 * 80.96050 * 20 19 18 42 42 H 1.09004 * 110.04918 * 238.30332 * 21 17 16 43 43 H 1.08998 * 110.05624 * 359.79045 * 21 17 16 44 44 H 1.09000 * 109.45764 * 54.80966 * 22 13 12 45 45 H 1.08995 * 109.46176 * 294.85881 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5412 -0.0022 11 6 5.4124 -2.6541 -0.0022 12 6 5.8070 -4.1323 -0.0028 13 7 5.3677 -4.7558 -1.2583 14 6 3.9023 -4.7853 -1.3466 15 6 3.4784 -5.5738 -2.5879 16 6 4.0633 -4.9038 -3.8352 17 6 5.5825 -4.8234 -3.6954 18 6 6.1816 -4.1051 -4.9182 19 6 7.5059 -4.8621 -5.1904 20 6 7.1289 -6.3334 -4.8847 21 6 6.1825 -6.2370 -3.6694 22 6 5.9555 -4.0734 -2.4190 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8745 -0.6799 -0.8911 26 1 5.8152 -2.1713 0.8881 27 1 5.8152 -2.1698 -0.8918 28 1 5.3312 -4.6357 0.8387 29 1 6.8898 -4.2194 0.0867 30 1 3.5223 -3.7662 -1.4169 31 1 3.4950 -5.2640 -0.4561 32 1 2.3907 -5.5862 -2.6575 33 1 3.8501 -6.5959 -2.5155 34 1 3.6531 -3.8989 -3.9352 35 1 3.8093 -5.4906 -4.7181 36 1 5.5123 -4.1866 -5.7747 37 1 6.3808 -3.0588 -4.6865 38 1 8.2926 -4.5176 -4.5192 39 1 7.8083 -4.7494 -6.2316 40 1 8.0184 -6.9102 -4.6308 41 1 6.6143 -6.7819 -5.7345 42 1 6.7424 -6.3884 -2.7465 43 1 5.3902 -6.9809 -3.7527 44 1 7.0403 -4.0501 -2.3154 45 1 5.5741 -3.0537 -2.4723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339112911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:41 Heat of formation + Delta-G solvation = -62.932212 kcal Electronic energy + Delta-G solvation = -21906.301407 eV Core-core repulsion = 18922.701876 eV Total energy + Delta-G solvation = -2983.599531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.10361 -37.60171 -35.76657 -33.16011 -32.48823 -30.09044 -28.96372 -28.60878 -27.36544 -24.48134 -24.05099 -22.05271 -21.60884 -20.75517 -20.20186 -18.01156 -16.88712 -16.00935 -15.82675 -15.54413 -15.00318 -14.95197 -14.35048 -14.19178 -13.62050 -13.50166 -13.17935 -13.06959 -12.68327 -12.54599 -12.21511 -11.86959 -11.56022 -11.46787 -11.19267 -11.09800 -11.05587 -10.91849 -10.78722 -10.69028 -10.58031 -10.46367 -10.22638 -9.92791 -9.88046 -9.86932 -9.22879 -8.87667 -8.51655 -7.75520 -6.15384 -4.14634 3.20957 3.28436 3.29597 4.18158 4.31821 4.62192 4.65434 4.68539 4.76070 5.16108 5.18405 5.32344 5.32942 5.43363 5.47324 5.53155 5.57931 5.63972 5.67512 5.70501 5.81813 5.82566 5.89221 5.90317 5.94269 6.02503 6.07358 6.12587 6.20754 6.25888 6.29086 6.32690 6.35903 6.51183 6.54617 6.59449 6.63171 6.89897 6.97638 7.44571 7.48869 7.56482 7.95006 8.60639 8.95295 9.44014 10.97495 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.004804 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.389172 B = 5826.873214 C = 5901.269109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.166 3.834 10 O -0.371 6.371 11 C 0.018 3.982 12 C 0.060 3.940 13 N -0.531 5.531 14 C 0.045 3.955 15 C -0.116 4.116 16 C -0.108 4.108 17 C -0.054 4.054 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.103 4.103 22 C 0.066 3.934 23 H 0.267 0.733 24 H 0.001 0.999 25 H -0.005 1.005 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.812 -10.384 -8.123 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.101 0.899 9 C 0.091 3.909 10 O -0.290 6.290 11 C -0.061 4.061 12 C -0.069 4.069 13 N -0.254 5.254 14 C -0.082 4.082 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.055 4.055 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.141 4.141 22 C -0.062 4.062 23 H 0.077 0.923 24 H 0.019 0.981 25 H 0.013 0.987 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.669 -10.913 -8.110 20.001 hybrid contribution 0.261 2.170 0.061 2.187 sum 14.930 -8.743 -8.049 19.082 Atomic orbital electron populations 1.69869 1.06031 1.27094 1.50256 1.24753 0.94771 0.98691 0.94618 0.86877 0.80355 0.83924 0.78745 1.19978 1.20727 1.19214 1.20862 0.88141 0.95268 1.51286 0.89946 1.20601 0.96231 0.79893 0.94165 1.87990 1.17321 1.29102 1.94622 1.23146 0.85316 0.98215 0.99438 1.22232 0.99866 0.91528 0.93266 1.62173 1.09895 1.52156 1.01145 1.22354 0.86423 1.02126 0.97280 1.21637 0.99816 0.99385 0.94579 1.21635 0.94177 1.00995 0.97776 1.20929 0.95342 0.95350 0.93858 1.22435 0.96474 0.99082 0.97528 1.22486 0.97441 0.95555 1.00591 1.22417 0.99103 0.96426 0.98480 1.22123 0.98229 0.95782 0.97958 1.22104 0.98551 0.95621 0.89972 0.92348 0.98091 0.98737 0.94242 0.94261 0.90099 0.90264 0.90052 0.91409 0.91824 0.91992 0.91997 0.92386 0.91500 0.91790 0.91756 0.92136 0.92256 0.92202 0.90884 0.92006 0.91610 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -15.17 9.99 -34.44 -0.34 -15.52 16 8 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.17 4.18 4.76 36.01 0.17 4.35 16 10 O -0.37 -8.29 7.00 -35.23 -0.25 -8.54 16 11 C 0.02 0.31 5.72 37.16 0.21 0.52 16 12 C 0.06 0.87 5.93 -3.83 -0.02 0.84 16 13 N -0.53 -7.86 4.39 -234.87 -1.03 -8.89 16 14 C 0.05 0.76 4.59 -3.84 -0.02 0.74 16 15 C -0.12 -1.68 5.86 -26.61 -0.16 -1.83 16 16 C -0.11 -1.46 4.45 -26.75 -0.12 -1.58 16 17 C -0.05 -0.67 0.62 -153.99 -0.10 -0.77 16 18 C -0.12 -1.29 5.89 -25.20 -0.15 -1.44 16 19 C -0.12 -1.17 6.91 -24.68 -0.17 -1.34 16 20 C -0.13 -1.21 6.84 -25.01 -0.17 -1.38 16 21 C -0.10 -1.16 5.38 -25.72 -0.14 -1.30 16 22 C 0.07 0.91 3.21 -3.98 -0.01 0.89 16 23 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 25 H -0.01 -0.12 7.57 -51.93 -0.39 -0.52 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.67 6.22 -51.93 -0.32 0.35 16 28 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.68 5.56 -51.93 -0.29 1.39 16 31 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.83 6.83 -51.93 -0.35 0.48 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 37 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.88 7.48 -51.93 -0.39 0.49 16 43 H 0.06 0.71 6.62 -51.93 -0.34 0.36 16 44 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 45 H 0.04 0.60 6.45 -51.93 -0.34 0.27 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -29.93 332.67 -9.54 -39.46 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -8.27 Total: -1.39 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.11 Total: -15.75 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.26 Total: -35.55 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.25 Total: -8.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.93 -9.54 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339112911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.469 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds