Wall clock time and date at job start Mon Mar 30 2020 07:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48504 * 109.47379 * 269.99580 * 3 2 1 5 5 H 1.48492 * 109.47335 * 30.00002 * 3 2 1 6 6 H 1.48499 * 109.46999 * 149.99952 * 3 2 1 7 7 C 1.37873 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00033 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00223 * 179.97438 * 7 2 1 10 10 O 1.42894 * 109.47080 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00040 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47328 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46808 * 65.00049 * 12 11 10 14 14 C 1.46836 * 111.00210 * 293.95266 * 13 12 11 15 15 C 1.53039 * 109.60887 * 186.12242 * 14 13 12 16 16 C 1.53190 * 109.22615 * 300.49427 * 15 14 13 17 17 C 1.52772 * 109.15967 * 57.07235 * 16 15 14 18 18 C 1.53957 * 109.80642 * 182.08678 * 17 16 15 19 19 C 1.54956 * 104.13131 * 217.34061 * 18 17 16 20 20 C 1.54927 * 102.78745 * 37.66782 * 19 18 17 21 21 C 1.53587 * 109.97317 * 64.70961 * 17 16 15 22 22 C 1.46916 * 111.00335 * 58.12734 * 13 12 11 23 23 H 0.97001 * 120.00204 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46536 * 60.00217 * 9 7 2 25 25 H 1.08994 * 109.46916 * 300.00322 * 9 7 2 26 26 H 1.08998 * 109.47032 * 59.99766 * 11 10 9 27 27 H 1.09002 * 109.46863 * 300.00029 * 11 10 9 28 28 H 1.08992 * 109.47374 * 305.00071 * 12 11 10 29 29 H 1.09001 * 109.46904 * 185.00002 * 12 11 10 30 30 H 1.08993 * 109.45072 * 66.08216 * 14 13 12 31 31 H 1.08998 * 109.42426 * 306.14882 * 14 13 12 32 32 H 1.09001 * 109.51619 * 180.56540 * 15 14 13 33 33 H 1.09000 * 109.55752 * 60.44480 * 15 14 13 34 34 H 1.08997 * 109.52503 * 297.16728 * 16 15 14 35 35 H 1.09009 * 109.57508 * 177.00551 * 16 15 14 36 36 H 1.09003 * 110.49996 * 336.00664 * 18 17 16 37 37 H 1.09001 * 110.49793 * 98.67924 * 18 17 16 38 38 H 1.08999 * 110.74689 * 279.34421 * 19 18 17 39 39 H 1.09000 * 110.74931 * 155.99058 * 19 18 17 40 40 H 1.09005 * 110.48130 * 203.54225 * 20 19 18 41 41 H 1.08996 * 110.59595 * 80.96050 * 20 19 18 42 42 H 1.09004 * 110.04918 * 238.30332 * 21 17 16 43 43 H 1.08998 * 110.05624 * 359.79045 * 21 17 16 44 44 H 1.09000 * 109.45764 * 54.80966 * 22 13 12 45 45 H 1.08995 * 109.46176 * 294.85881 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5412 -0.0022 11 6 5.4124 -2.6541 -0.0022 12 6 5.8070 -4.1323 -0.0028 13 7 5.3677 -4.7558 -1.2583 14 6 3.9023 -4.7853 -1.3466 15 6 3.4784 -5.5738 -2.5879 16 6 4.0633 -4.9038 -3.8352 17 6 5.5825 -4.8234 -3.6954 18 6 6.1816 -4.1051 -4.9182 19 6 7.5059 -4.8621 -5.1904 20 6 7.1289 -6.3334 -4.8847 21 6 6.1825 -6.2370 -3.6694 22 6 5.9555 -4.0734 -2.4190 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8745 -0.6799 -0.8911 26 1 5.8152 -2.1713 0.8881 27 1 5.8152 -2.1698 -0.8918 28 1 5.3312 -4.6357 0.8387 29 1 6.8898 -4.2194 0.0867 30 1 3.5223 -3.7662 -1.4169 31 1 3.4950 -5.2640 -0.4561 32 1 2.3907 -5.5862 -2.6575 33 1 3.8501 -6.5959 -2.5155 34 1 3.6531 -3.8989 -3.9352 35 1 3.8093 -5.4906 -4.7181 36 1 5.5123 -4.1866 -5.7747 37 1 6.3808 -3.0588 -4.6865 38 1 8.2926 -4.5176 -4.5192 39 1 7.8083 -4.7494 -6.2316 40 1 8.0184 -6.9102 -4.6308 41 1 6.6143 -6.7819 -5.7345 42 1 6.7424 -6.3884 -2.7465 43 1 5.3902 -6.9809 -3.7527 44 1 7.0403 -4.0501 -2.3154 45 1 5.5741 -3.0537 -2.4723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339112911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:40 Heat of formation + Delta-G solvation = -81.091269 kcal Electronic energy + Delta-G solvation = -21907.088843 eV Core-core repulsion = 18922.701876 eV Total energy + Delta-G solvation = -2984.386966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20668 -39.02738 -37.10794 -34.95186 -34.10600 -31.14538 -30.68076 -29.47478 -29.06987 -25.54198 -25.32561 -24.03473 -22.91459 -21.80676 -21.17251 -19.26578 -18.91631 -17.51056 -17.26137 -16.77604 -16.33170 -16.22950 -15.98771 -15.44802 -14.95538 -14.86387 -14.57954 -14.31017 -14.02113 -13.84207 -13.63045 -13.27125 -13.14077 -12.78615 -12.66100 -12.58639 -12.39020 -12.04681 -11.88357 -11.86584 -11.80519 -11.66861 -11.39649 -11.29758 -11.27203 -11.00839 -10.97756 -10.93171 -10.33899 -9.08517 -8.41039 -6.48659 1.28005 1.30448 1.41211 2.24366 2.88441 2.91439 3.19073 3.70186 3.76842 3.78132 4.12355 4.20418 4.24188 4.27371 4.32809 4.42753 4.44077 4.52305 4.54988 4.63595 4.69072 4.72152 4.74873 4.87717 4.90852 4.93248 4.98430 5.02809 5.03841 5.08215 5.15848 5.19058 5.26715 5.28106 5.34715 5.39725 5.46402 5.53751 5.63360 5.67362 5.88566 6.17838 6.25307 6.54974 6.68195 7.15671 8.75862 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.004804 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.389172 B = 5826.873214 C = 5901.269109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.540 4.540 8 H 0.032 0.968 9 C 0.179 3.821 10 O -0.389 6.389 11 C 0.011 3.989 12 C 0.062 3.938 13 N -0.522 5.522 14 C 0.052 3.948 15 C -0.112 4.112 16 C -0.106 4.106 17 C -0.054 4.054 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.099 4.099 22 C 0.068 3.932 23 H 0.273 0.727 24 H 0.008 0.992 25 H 0.001 0.999 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.905 -10.221 -8.920 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.578 4.578 8 H 0.050 0.950 9 C 0.103 3.897 10 O -0.309 6.309 11 C -0.068 4.068 12 C -0.066 4.066 13 N -0.244 5.244 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.144 4.144 17 C -0.054 4.054 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.137 4.137 22 C -0.060 4.060 23 H 0.082 0.918 24 H 0.025 0.975 25 H 0.019 0.981 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 17.779 -10.774 -8.907 22.617 hybrid contribution -0.758 2.015 0.323 2.177 sum 17.021 -8.758 -8.584 20.979 Atomic orbital electron populations 1.70021 1.08140 1.28725 1.51050 1.25776 0.95737 1.03176 0.93536 0.85670 0.79424 0.77976 0.79656 1.18609 1.19610 1.17265 1.21096 0.90688 0.93796 1.52185 0.94996 1.20268 0.93467 0.81563 0.94408 1.88008 1.20704 1.27380 1.94787 1.23470 0.82488 1.00535 1.00271 1.22369 1.01890 0.89393 0.92968 1.62225 1.08242 1.52105 1.01866 1.22162 0.87859 0.99756 0.97826 1.21596 0.99446 0.99908 0.94045 1.21625 0.95320 0.99632 0.97822 1.20948 0.94296 0.96429 0.93772 1.22430 0.97520 0.98812 0.96809 1.22473 0.96387 0.95104 1.01565 1.22395 0.99151 0.96630 0.97742 1.22061 0.98422 0.94467 0.98714 1.22162 0.99358 0.94304 0.90203 0.91794 0.97458 0.98123 0.92895 0.93711 0.90567 0.86559 0.94310 0.92852 0.92721 0.90365 0.94529 0.90686 0.91315 0.92441 0.91362 0.90802 0.91017 0.91606 0.91349 0.92230 0.89616 0.97004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 2 C 0.02 0.95 5.47 84.65 0.46 1.42 16 3 Si 0.95 43.94 27.47 68.60 1.88 45.82 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.54 -33.03 9.99 25.60 0.26 -32.77 16 8 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 9 C 0.18 9.09 4.76 71.24 0.34 9.42 16 10 O -0.39 -17.86 7.00 -148.98 -1.04 -18.90 16 11 C 0.01 0.36 5.72 71.98 0.41 0.77 16 12 C 0.06 1.72 5.93 86.30 0.51 2.23 16 13 N -0.52 -15.09 4.39 -896.98 -3.94 -19.03 16 14 C 0.05 1.81 4.59 86.33 0.40 2.21 16 15 C -0.11 -3.31 5.86 30.67 0.18 -3.13 16 16 C -0.11 -2.87 4.45 30.58 0.14 -2.74 16 17 C -0.05 -1.26 0.62 -51.85 -0.03 -1.29 16 18 C -0.12 -2.39 5.89 31.59 0.19 -2.20 16 19 C -0.12 -1.88 6.91 31.92 0.22 -1.66 16 20 C -0.12 -1.93 6.84 31.71 0.22 -1.71 16 21 C -0.10 -1.98 5.38 31.25 0.17 -1.81 16 22 C 0.07 1.79 3.21 86.19 0.28 2.07 16 23 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 25 H 0.00 0.05 7.57 -2.39 -0.02 0.04 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.48 6.22 -2.39 -0.01 1.46 16 28 H 0.08 2.20 8.06 -2.39 -0.02 2.18 16 29 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.04 1.71 5.56 -2.39 -0.01 1.70 16 31 H 0.05 1.96 8.06 -2.39 -0.02 1.94 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 2.05 6.83 -2.39 -0.02 2.04 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.07 1.37 7.84 -2.39 -0.02 1.35 16 37 H 0.06 1.23 7.82 -2.39 -0.02 1.22 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.45 7.48 -2.38 -0.02 1.43 16 43 H 0.06 1.22 6.62 -2.39 -0.02 1.21 16 44 H 0.09 1.94 8.13 -2.39 -0.02 1.92 16 45 H 0.01 0.38 6.45 -2.39 -0.02 0.36 16 Total: -1.00 -67.43 332.67 1.80 -65.63 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.87 Total: 14.81 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 3.73 Total: -29.21 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -3.64 Total: -78.15 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.04 Total: -18.90 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -67.43 1.80 -65.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339112911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.461 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds