Wall clock time and date at job start Mon Mar 30 2020 07:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99704 * 2 1 4 4 H 1.48498 * 109.46886 * 270.00231 * 3 2 1 5 5 H 1.48502 * 109.47094 * 30.00266 * 3 2 1 6 6 H 1.48498 * 109.47166 * 149.99887 * 3 2 1 7 7 C 1.37880 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99561 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47319 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47494 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.46826 * 180.02562 * 11 10 9 13 13 C 1.47012 * 111.00164 * 70.23399 * 12 11 10 14 14 C 1.53096 * 109.25984 * 182.39039 * 13 12 11 15 15 O 1.43019 * 109.25553 * 303.15086 * 14 13 12 16 16 C 1.43016 * 113.74070 * 58.67003 * 15 14 13 17 17 C 1.47017 * 110.99533 * 193.86455 * 12 11 10 18 18 H 1.08997 * 109.54326 * 297.56405 * 17 12 11 19 19 C 1.52998 * 109.50426 * 57.67810 * 17 12 11 20 20 C 1.53009 * 109.46998 * 182.82470 * 19 17 12 21 21 C 1.53781 * 113.61449 * 271.68404 * 20 19 17 22 22 C 1.53951 * 87.01918 * 220.04927 * 21 20 19 23 23 C 1.53781 * 87.11373 * 25.36185 * 22 21 20 24 24 H 0.96994 * 120.00434 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47540 * 59.99476 * 9 7 2 26 26 H 1.09004 * 109.47471 * 299.99854 * 9 7 2 27 27 H 1.09005 * 109.46389 * 59.99547 * 10 9 7 28 28 H 1.08999 * 109.46615 * 300.00592 * 10 9 7 29 29 H 1.09004 * 109.46794 * 60.00166 * 11 10 9 30 30 H 1.08997 * 109.47193 * 300.00395 * 11 10 9 31 31 H 1.09000 * 109.50819 * 62.45328 * 13 12 11 32 32 H 1.09002 * 109.50280 * 302.32518 * 13 12 11 33 33 H 1.08996 * 109.51134 * 63.08341 * 14 13 12 34 34 H 1.08996 * 109.50730 * 183.17297 * 14 13 12 35 35 H 1.09008 * 109.50335 * 61.26449 * 16 15 14 36 36 H 1.08998 * 109.50540 * 181.39539 * 16 15 14 37 37 H 1.08997 * 109.47075 * 302.82005 * 19 17 12 38 38 H 1.09000 * 109.47842 * 62.82686 * 19 17 12 39 39 H 1.08993 * 112.84802 * 42.88042 * 20 19 17 40 40 H 1.09003 * 113.61222 * 334.56658 * 21 20 19 41 41 H 1.09001 * 113.61160 * 105.46524 * 21 20 19 42 42 H 1.09007 * 113.53633 * 270.80889 * 22 21 20 43 43 H 1.08993 * 113.74405 * 139.94508 * 22 21 20 44 44 H 1.09001 * 113.61668 * 220.09016 * 23 22 21 45 45 H 1.09003 * 113.68945 * 89.19772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0022 12 7 6.0414 -4.0212 -0.0027 13 6 5.7784 -4.6726 -1.2942 14 6 6.2493 -6.1279 -1.2309 15 8 7.6356 -6.1603 -0.8806 16 6 7.9276 -5.5351 0.3721 17 6 7.4736 -4.0737 0.3250 18 1 8.0418 -3.5404 -0.4371 19 6 7.7098 -3.4212 1.6886 20 6 9.2084 -3.4130 1.9973 21 6 9.6979 -4.6858 2.7081 22 6 10.5837 -3.7673 3.5694 23 6 9.5685 -2.6486 3.2821 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6801 0.8888 26 1 3.8745 -0.6798 -0.8912 27 1 3.6580 -3.1504 -0.8908 28 1 3.6587 -3.1500 0.8892 29 1 5.9157 -2.1221 0.8873 30 1 5.9143 -2.1227 -0.8926 31 1 6.3190 -4.1491 -2.0827 32 1 4.7092 -4.6448 -1.5047 33 1 5.6713 -6.6653 -0.4791 34 1 6.1080 -6.5988 -2.2037 35 1 7.3983 -6.0552 1.1706 36 1 9.0007 -5.5770 0.5584 37 1 7.3370 -2.3971 1.6708 38 1 7.1835 -3.9862 2.4579 39 1 9.8161 -3.1321 1.1372 40 1 8.9189 -5.1969 3.2739 41 1 10.2625 -5.3573 2.0613 42 1 11.5686 -3.5843 3.1395 43 1 10.6275 -4.0582 4.6189 44 1 10.0289 -1.6778 3.0982 45 1 8.7536 -2.6005 4.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339774368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:07 Heat of formation + Delta-G solvation = -38.340652 kcal Electronic energy + Delta-G solvation = -21110.009340 eV Core-core repulsion = 18127.476180 eV Total energy + Delta-G solvation = -2982.533161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.14340 -38.66397 -36.29510 -33.79064 -32.62568 -31.45136 -28.83068 -27.79349 -26.03087 -25.23016 -24.35322 -22.21608 -21.89865 -20.09629 -19.95902 -19.39971 -16.81671 -16.44342 -16.29947 -15.70749 -15.48726 -14.95431 -14.52916 -14.35851 -14.18562 -13.84574 -13.57119 -13.17033 -12.76483 -12.61920 -12.54473 -12.18259 -11.94332 -11.74753 -11.50510 -11.45210 -11.08496 -10.95253 -10.74523 -10.64737 -10.54715 -10.23845 -10.18416 -9.92327 -9.79931 -9.58496 -9.39933 -9.15170 -8.52707 -8.19160 -6.03050 -4.00724 3.30688 3.38074 3.41695 3.79700 3.89245 4.38169 4.44421 4.45965 4.58867 4.65557 4.80995 5.01992 5.04166 5.11566 5.26494 5.30712 5.34034 5.37691 5.48192 5.49298 5.57184 5.63859 5.64657 5.70810 5.71815 5.75336 5.79812 5.87857 5.91510 5.98768 6.07856 6.14829 6.24183 6.37506 6.53260 6.58387 6.91192 7.07576 7.20974 7.22735 7.36642 7.46883 7.81551 8.56304 9.02553 9.59675 11.10571 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.004455 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.295901 B = 6283.204251 C = 7521.754819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.095 4.095 11 C 0.048 3.952 12 N -0.532 5.532 13 C 0.016 3.984 14 C 0.064 3.936 15 O -0.391 6.391 16 C 0.069 3.931 17 C 0.050 3.950 18 H 0.044 0.956 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.008 0.992 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.877 -9.947 3.221 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.133 4.133 11 C -0.079 4.079 12 N -0.257 5.257 13 C -0.112 4.112 14 C -0.013 4.013 15 O -0.309 6.309 16 C -0.007 4.007 17 C -0.058 4.058 18 H 0.062 0.938 19 C -0.144 4.144 20 C -0.129 4.129 21 C -0.177 4.177 22 C -0.181 4.181 23 C -0.175 4.175 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.603 -10.178 3.465 23.240 hybrid contribution 0.482 1.628 -0.560 1.788 sum 21.085 -8.550 2.906 22.937 Atomic orbital electron populations 1.69913 1.06293 1.26829 1.51353 1.25037 0.94718 0.99137 0.94645 0.86779 0.80359 0.83695 0.78443 1.20375 1.21391 1.19066 1.21141 0.89500 0.94437 1.50519 0.91040 1.19550 0.97170 0.92340 0.96021 1.21445 0.90872 0.99441 1.01542 1.22449 0.98071 0.86902 1.00489 1.62281 1.14520 1.18631 1.30260 1.22815 1.02653 0.95181 0.90523 1.22679 0.82128 0.95571 1.00963 1.87946 1.25493 1.78700 1.38786 1.22822 1.00738 0.91167 0.86013 1.22284 0.89306 0.96952 0.97304 0.93810 1.21683 0.94899 1.01637 0.96144 1.22568 0.96111 0.97005 0.97251 1.23121 0.99510 0.96280 0.98750 1.22834 0.97882 0.97322 1.00059 1.22930 0.99157 0.97680 0.97694 0.92777 0.96703 0.97370 0.93012 0.92007 0.90536 0.95344 0.94345 0.88844 0.92291 0.88722 0.92490 0.88570 0.90739 0.90687 0.89435 0.89876 0.91556 0.90465 0.91623 0.91676 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.90 5.17 -26.73 -0.14 -2.04 16 11 C 0.05 0.79 4.79 -3.83 -0.02 0.77 16 12 N -0.53 -7.76 4.51 -226.34 -1.02 -8.78 16 13 C 0.02 0.23 5.46 -3.71 -0.02 0.21 16 14 C 0.06 0.76 7.01 37.21 0.26 1.03 16 15 O -0.39 -5.14 10.83 -35.23 -0.38 -5.52 16 16 C 0.07 0.80 5.52 37.21 0.21 1.00 16 17 C 0.05 0.63 2.06 -67.60 -0.14 0.49 16 18 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 19 C -0.11 -1.17 4.44 -26.73 -0.12 -1.29 16 20 C -0.11 -1.00 3.21 -89.80 -0.29 -1.29 16 21 C -0.14 -1.10 6.10 -25.83 -0.16 -1.26 16 22 C -0.14 -1.08 8.09 -25.83 -0.21 -1.29 16 23 C -0.14 -1.17 7.65 -25.92 -0.20 -1.37 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 27 H 0.05 1.04 6.65 -51.93 -0.35 0.69 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.23 5.55 -51.93 -0.29 0.94 16 30 H 0.03 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.32 6.54 -51.93 -0.34 0.98 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.10 0.94 5.72 -51.93 -0.30 0.65 16 37 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16 38 H 0.07 0.86 7.83 -51.93 -0.41 0.45 16 39 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 40 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 41 H 0.07 0.49 7.20 -51.93 -0.37 0.12 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -30.88 338.16 -9.75 -40.63 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.19 Total: -2.33 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.37 Total: -18.93 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.25 Total: -36.21 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.38 Total: -5.52 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.88 -9.75 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339774368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.290 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds