Wall clock time and date at job start Mon Mar 30 2020 07:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99704 * 2 1 4 4 H 1.48498 * 109.46886 * 270.00231 * 3 2 1 5 5 H 1.48502 * 109.47094 * 30.00266 * 3 2 1 6 6 H 1.48498 * 109.47166 * 149.99887 * 3 2 1 7 7 C 1.37880 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99561 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47319 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47494 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.46826 * 180.02562 * 11 10 9 13 13 C 1.47012 * 111.00164 * 70.23399 * 12 11 10 14 14 C 1.53096 * 109.25984 * 182.39039 * 13 12 11 15 15 O 1.43019 * 109.25553 * 303.15086 * 14 13 12 16 16 C 1.43016 * 113.74070 * 58.67003 * 15 14 13 17 17 C 1.47017 * 110.99533 * 193.86455 * 12 11 10 18 18 H 1.08997 * 109.54326 * 297.56405 * 17 12 11 19 19 C 1.52998 * 109.50426 * 57.67810 * 17 12 11 20 20 C 1.53009 * 109.46998 * 182.82470 * 19 17 12 21 21 C 1.53781 * 113.61449 * 271.68404 * 20 19 17 22 22 C 1.53951 * 87.01918 * 220.04927 * 21 20 19 23 23 C 1.53781 * 87.11373 * 25.36185 * 22 21 20 24 24 H 0.96994 * 120.00434 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47540 * 59.99476 * 9 7 2 26 26 H 1.09004 * 109.47471 * 299.99854 * 9 7 2 27 27 H 1.09005 * 109.46389 * 59.99547 * 10 9 7 28 28 H 1.08999 * 109.46615 * 300.00592 * 10 9 7 29 29 H 1.09004 * 109.46794 * 60.00166 * 11 10 9 30 30 H 1.08997 * 109.47193 * 300.00395 * 11 10 9 31 31 H 1.09000 * 109.50819 * 62.45328 * 13 12 11 32 32 H 1.09002 * 109.50280 * 302.32518 * 13 12 11 33 33 H 1.08996 * 109.51134 * 63.08341 * 14 13 12 34 34 H 1.08996 * 109.50730 * 183.17297 * 14 13 12 35 35 H 1.09008 * 109.50335 * 61.26449 * 16 15 14 36 36 H 1.08998 * 109.50540 * 181.39539 * 16 15 14 37 37 H 1.08997 * 109.47075 * 302.82005 * 19 17 12 38 38 H 1.09000 * 109.47842 * 62.82686 * 19 17 12 39 39 H 1.08993 * 112.84802 * 42.88042 * 20 19 17 40 40 H 1.09003 * 113.61222 * 334.56658 * 21 20 19 41 41 H 1.09001 * 113.61160 * 105.46524 * 21 20 19 42 42 H 1.09007 * 113.53633 * 270.80889 * 22 21 20 43 43 H 1.08993 * 113.74405 * 139.94508 * 22 21 20 44 44 H 1.09001 * 113.61668 * 220.09016 * 23 22 21 45 45 H 1.09003 * 113.68945 * 89.19772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0022 12 7 6.0414 -4.0212 -0.0027 13 6 5.7784 -4.6726 -1.2942 14 6 6.2493 -6.1279 -1.2309 15 8 7.6356 -6.1603 -0.8806 16 6 7.9276 -5.5351 0.3721 17 6 7.4736 -4.0737 0.3250 18 1 8.0418 -3.5404 -0.4371 19 6 7.7098 -3.4212 1.6886 20 6 9.2084 -3.4130 1.9973 21 6 9.6979 -4.6858 2.7081 22 6 10.5837 -3.7673 3.5694 23 6 9.5685 -2.6486 3.2821 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6801 0.8888 26 1 3.8745 -0.6798 -0.8912 27 1 3.6580 -3.1504 -0.8908 28 1 3.6587 -3.1500 0.8892 29 1 5.9157 -2.1221 0.8873 30 1 5.9143 -2.1227 -0.8926 31 1 6.3190 -4.1491 -2.0827 32 1 4.7092 -4.6448 -1.5047 33 1 5.6713 -6.6653 -0.4791 34 1 6.1080 -6.5988 -2.2037 35 1 7.3983 -6.0552 1.1706 36 1 9.0007 -5.5770 0.5584 37 1 7.3370 -2.3971 1.6708 38 1 7.1835 -3.9862 2.4579 39 1 9.8161 -3.1321 1.1372 40 1 8.9189 -5.1969 3.2739 41 1 10.2625 -5.3573 2.0613 42 1 11.5686 -3.5843 3.1395 43 1 10.6275 -4.0582 4.6189 44 1 10.0289 -1.6778 3.0982 45 1 8.7536 -2.6005 4.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339774368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:07 Heat of formation + Delta-G solvation = -57.318028 kcal Electronic energy + Delta-G solvation = -21110.832261 eV Core-core repulsion = 18127.476180 eV Total energy + Delta-G solvation = -2983.356081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10108 -39.43079 -37.51989 -35.56893 -33.97082 -33.10129 -30.07382 -28.97827 -27.22744 -26.19077 -25.22014 -23.85005 -22.80684 -21.73207 -21.04437 -20.11896 -18.91657 -17.51033 -17.35826 -16.59835 -16.38146 -16.25458 -16.01619 -15.62504 -15.44986 -14.93859 -14.76872 -14.61926 -14.22434 -13.79672 -13.49898 -13.28564 -13.26427 -12.98201 -12.79169 -12.63912 -12.29695 -12.19482 -12.04539 -11.81268 -11.64731 -11.43954 -11.40326 -11.34021 -11.23638 -10.94917 -10.90260 -10.76968 -10.50204 -9.35757 -8.30118 -6.34426 1.34719 1.36742 1.48892 2.35443 2.72609 2.93338 3.05096 3.61774 3.73260 3.86185 3.88775 3.99809 4.01201 4.08878 4.18502 4.20015 4.31338 4.40674 4.50747 4.58956 4.64692 4.69715 4.69801 4.75589 4.81497 4.88427 4.91437 4.94138 4.95252 5.01086 5.06396 5.11841 5.13445 5.19541 5.28746 5.44982 5.50911 5.57559 5.65322 5.68906 6.00472 6.06122 6.19396 6.29134 6.73708 7.30190 8.86947 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.004455 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.295901 B = 6283.204251 C = 7521.754819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.533 4.533 8 H 0.029 0.971 9 C -0.009 4.009 10 C -0.085 4.085 11 C 0.060 3.940 12 N -0.540 5.540 13 C 0.014 3.986 14 C 0.067 3.933 15 O -0.402 6.402 16 C 0.072 3.928 17 C 0.053 3.947 18 H 0.039 0.961 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.141 4.141 24 H 0.266 0.734 25 H 0.021 0.979 26 H 0.016 0.984 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.634 -9.642 3.437 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.123 4.123 11 C -0.067 4.067 12 N -0.265 5.265 13 C -0.114 4.114 14 C -0.010 4.010 15 O -0.321 6.321 16 C -0.005 4.005 17 C -0.056 4.056 18 H 0.057 0.943 19 C -0.138 4.138 20 C -0.128 4.128 21 C -0.174 4.174 22 C -0.176 4.176 23 C -0.178 4.178 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.380 -9.897 3.683 25.654 hybrid contribution -0.455 1.447 -0.627 1.641 sum 22.925 -8.450 3.056 24.623 Atomic orbital electron populations 1.70070 1.08353 1.28191 1.52718 1.26047 0.95630 1.03604 0.94073 0.85629 0.79536 0.78097 0.79211 1.19182 1.20857 1.16900 1.21491 0.92183 0.93045 1.50354 0.95232 1.19484 0.93852 0.94978 0.96371 1.21248 0.93618 0.96764 1.00643 1.22190 0.95209 0.88415 1.00911 1.62233 1.16227 1.17251 1.30834 1.22854 1.02101 0.96364 0.90057 1.22730 0.81755 0.94330 1.02181 1.87937 1.25851 1.78804 1.39459 1.22916 1.01922 0.90141 0.85521 1.22353 0.87588 0.97890 0.97741 0.94326 1.21625 0.96434 1.00527 0.95180 1.22555 0.94517 0.98118 0.97625 1.23108 0.99571 0.95970 0.98733 1.22826 0.97909 0.96426 1.00414 1.22949 0.99427 0.98138 0.97291 0.92477 0.96104 0.96595 0.93667 0.93265 0.89774 0.95283 0.94598 0.89843 0.92216 0.86683 0.92378 0.86609 0.91962 0.91176 0.89150 0.90019 0.90652 0.89631 0.91122 0.91554 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.00 0.18 5.47 84.66 0.46 0.64 16 3 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.08 -3.40 5.17 30.60 0.16 -3.24 16 11 C 0.06 1.93 4.79 86.30 0.41 2.34 16 12 N -0.54 -15.24 4.51 -870.01 -3.92 -19.17 16 13 C 0.01 0.38 5.46 86.31 0.47 0.85 16 14 C 0.07 1.51 7.01 72.01 0.50 2.01 16 15 O -0.40 -9.74 10.83 -148.98 -1.61 -11.35 16 16 C 0.07 1.49 5.52 72.02 0.40 1.89 16 17 C 0.05 1.22 2.06 44.93 0.09 1.32 16 18 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 19 C -0.10 -2.06 4.44 30.60 0.14 -1.93 16 20 C -0.11 -1.75 3.21 -10.26 -0.03 -1.78 16 21 C -0.14 -1.83 6.10 31.18 0.19 -1.64 16 22 C -0.14 -1.75 8.09 31.18 0.25 -1.50 16 23 C -0.14 -2.14 7.65 31.12 0.24 -1.90 16 24 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 25 H 0.02 0.96 7.20 -2.38 -0.02 0.95 16 26 H 0.02 0.73 7.57 -2.38 -0.02 0.71 16 27 H 0.04 1.84 6.65 -2.38 -0.02 1.83 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 2.58 5.55 -2.38 -0.01 2.57 16 30 H 0.03 0.93 8.07 -2.39 -0.02 0.91 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 2.36 6.54 -2.39 -0.02 2.34 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.12 1.95 5.72 -2.39 -0.01 1.93 16 37 H 0.06 1.44 5.95 -2.39 -0.01 1.42 16 38 H 0.07 1.52 7.83 -2.39 -0.02 1.50 16 39 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 40 H 0.08 1.14 7.89 -2.39 -0.02 1.12 16 41 H 0.07 0.89 7.20 -2.39 -0.02 0.87 16 42 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -66.64 338.16 1.18 -65.46 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.88 Total: 13.36 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 3.65 Total: -34.48 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -3.62 Total: -79.60 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.61 Total: -11.35 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -66.64 1.18 -65.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339774368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.146 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds