Wall clock time and date at job start Mon Mar 30 2020 07:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99831 * 2 1 4 4 H 1.48501 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47227 * 300.00328 * 3 2 1 6 6 H 1.48501 * 109.46881 * 60.00754 * 3 2 1 7 7 C 1.37876 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47188 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46910 * 185.39834 * 11 10 9 13 13 C 1.47008 * 110.99976 * 70.36814 * 12 11 10 14 14 C 1.53096 * 109.25733 * 177.60673 * 13 12 11 15 15 O 1.43010 * 109.25904 * 56.84975 * 14 13 12 16 16 C 1.43021 * 113.73822 * 301.32506 * 15 14 13 17 17 C 1.47014 * 110.99937 * 306.73102 * 12 11 10 18 18 H 1.09000 * 109.50813 * 62.46045 * 17 12 11 19 19 C 1.53003 * 109.50793 * 302.32602 * 17 12 11 20 20 C 1.52993 * 109.47368 * 174.51848 * 19 17 12 21 21 C 1.53782 * 113.61487 * 272.60419 * 20 19 17 22 22 C 1.53777 * 87.08364 * 220.01424 * 21 20 19 23 23 C 1.53776 * 113.61952 * 175.10660 * 20 19 17 24 24 H 0.97009 * 120.00086 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46928 * 60.00713 * 9 7 2 26 26 H 1.08995 * 109.47117 * 300.00472 * 9 7 2 27 27 H 1.08996 * 109.47224 * 59.99753 * 10 9 7 28 28 H 1.09009 * 109.46797 * 300.00180 * 10 9 7 29 29 H 1.08995 * 109.47127 * 65.39623 * 11 10 9 30 30 H 1.08997 * 109.46804 * 305.39884 * 11 10 9 31 31 H 1.09004 * 109.50603 * 57.66770 * 13 12 11 32 32 H 1.08999 * 109.50807 * 297.53960 * 13 12 11 33 33 H 1.09006 * 109.50583 * 176.78151 * 14 13 12 34 34 H 1.09001 * 109.50669 * 296.90632 * 14 13 12 35 35 H 1.08995 * 109.50645 * 178.60326 * 16 15 14 36 36 H 1.08997 * 109.50710 * 298.70219 * 16 15 14 37 37 H 1.09000 * 109.47367 * 294.52349 * 19 17 12 38 38 H 1.09007 * 109.46838 * 54.52086 * 19 17 12 39 39 H 1.08998 * 112.84710 * 43.90864 * 20 19 17 40 40 H 1.08999 * 113.61496 * 334.56551 * 21 20 19 41 41 H 1.09010 * 113.61292 * 105.46951 * 21 20 19 42 42 H 1.09000 * 113.61939 * 270.88875 * 22 21 20 43 43 H 1.08998 * 113.69146 * 139.98976 * 22 21 20 44 44 H 1.09003 * 113.61351 * 254.53230 * 23 20 19 45 45 H 1.09007 * 113.60827 * 25.43155 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4295 -6.1006 0.1291 13 6 3.0141 -6.1395 1.4774 14 6 3.9492 -7.3467 1.5877 15 8 4.9475 -7.2648 0.5670 16 6 4.4132 -7.2258 -0.7591 17 6 3.4828 -6.0173 -0.8931 18 1 4.0548 -5.1002 -0.7525 19 6 2.8457 -6.0150 -2.2842 20 6 3.9290 -5.7912 -3.3410 21 6 4.2126 -4.3072 -3.6279 22 6 4.3234 -4.6962 -5.1115 23 6 3.4106 -5.8901 -4.7854 24 1 -0.4851 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8906 29 1 0.9284 -5.0875 -0.9357 30 1 0.7828 -5.0043 0.8363 31 1 2.2180 -6.2269 2.2169 32 1 3.5786 -5.2243 1.6560 33 1 4.4288 -7.3473 2.5666 34 1 3.3749 -8.2646 1.4625 35 1 5.2283 -7.1390 -1.4775 36 1 3.8530 -8.1405 -0.9528 37 1 2.3572 -6.9731 -2.4618 38 1 2.1082 -5.2145 -2.3447 39 1 4.8270 -6.3812 -3.1581 40 1 3.3695 -3.6516 -3.4102 41 1 5.1491 -3.9507 -3.1989 42 1 5.3300 -4.9859 -5.4130 43 1 3.8703 -3.9726 -5.7891 44 1 3.6996 -6.8116 -5.2908 45 1 2.3481 -5.6672 -4.8841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339774373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:10 Heat of formation + Delta-G solvation = -42.537455 kcal Electronic energy + Delta-G solvation = -21627.450587 eV Core-core repulsion = 18644.735439 eV Total energy + Delta-G solvation = -2982.715148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06944 -38.47552 -36.33570 -33.51651 -32.54651 -31.21156 -28.60820 -27.35860 -25.53660 -25.14046 -24.22966 -22.62399 -21.72736 -20.95002 -19.30723 -18.87247 -16.55177 -16.34547 -15.94999 -15.62300 -15.26537 -14.77664 -14.61527 -14.26452 -14.01558 -13.82815 -13.45336 -12.89505 -12.52788 -12.32032 -12.28171 -11.97818 -11.86114 -11.53994 -11.35133 -11.07245 -10.91471 -10.85851 -10.71135 -10.62189 -10.48029 -10.31180 -10.03416 -9.95279 -9.65071 -9.42657 -9.40786 -9.17210 -8.36387 -7.90137 -6.01111 -4.03485 3.29317 3.36974 3.41265 3.88964 4.05326 4.44868 4.63954 4.72477 4.82621 4.92245 5.00460 5.12184 5.16294 5.29983 5.34575 5.38214 5.45810 5.52700 5.66740 5.72693 5.76718 5.77813 5.82906 5.89262 5.91914 5.95712 5.98574 6.04543 6.11292 6.18805 6.30226 6.34376 6.43565 6.58433 6.63002 6.79826 7.04793 7.16311 7.31810 7.36655 7.65573 7.79661 7.98477 8.42072 9.03677 9.60842 11.09951 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.005808 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.017152 B = 4819.818065 C = 6090.833278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.026 3.974 10 C -0.143 4.143 11 C 0.051 3.949 12 N -0.534 5.534 13 C 0.014 3.986 14 C 0.065 3.935 15 O -0.389 6.389 16 C 0.069 3.931 17 C 0.048 3.952 18 H 0.060 0.940 19 C -0.102 4.102 20 C -0.111 4.111 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.237 -15.259 -4.512 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.182 4.182 11 C -0.076 4.076 12 N -0.258 5.258 13 C -0.114 4.114 14 C -0.012 4.012 15 O -0.307 6.307 16 C -0.008 4.008 17 C -0.061 4.061 18 H 0.078 0.922 19 C -0.140 4.140 20 C -0.130 4.130 21 C -0.175 4.175 22 C -0.182 4.182 23 C -0.173 4.173 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.024 -15.595 -4.537 17.695 hybrid contribution 0.505 1.870 0.149 1.943 sum 7.529 -13.724 -4.387 16.257 Atomic orbital electron populations 1.69973 1.06023 1.26441 1.51054 1.25014 0.94819 0.99189 0.95370 0.86586 0.80162 0.83959 0.77621 1.19786 1.20974 1.20989 1.21279 0.92944 0.91131 1.50290 0.92880 1.19013 0.93818 0.91289 0.97066 1.22217 0.99941 0.95684 1.00377 1.22362 0.94596 0.88439 1.02248 1.62558 1.16076 1.44938 1.02241 1.22771 0.98322 0.98409 0.91941 1.22656 0.89928 0.97210 0.91410 1.87952 1.32863 1.94812 1.15105 1.22770 0.96945 0.97089 0.83977 1.22259 0.92890 0.98362 0.92552 0.92249 1.21611 0.97755 1.02812 0.91823 1.22591 0.98608 0.97468 0.94353 1.23014 1.02553 0.96257 0.95695 1.22804 0.99700 0.98368 0.97306 1.22916 0.99905 0.98251 0.96182 0.93079 0.96655 0.96778 0.93598 0.92917 0.90766 0.91205 0.89878 0.93319 0.88888 0.92698 0.88900 0.92753 0.91463 0.90415 0.89547 0.89317 0.91760 0.90656 0.91620 0.91945 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.14 -2.94 4.21 -26.73 -0.11 -3.05 16 11 C 0.05 0.87 4.79 -3.82 -0.02 0.85 16 12 N -0.53 -8.02 4.75 -226.34 -1.07 -9.10 16 13 C 0.01 0.20 5.40 -3.72 -0.02 0.18 16 14 C 0.07 0.80 7.01 37.21 0.26 1.06 16 15 O -0.39 -5.51 10.83 -35.23 -0.38 -5.89 16 16 C 0.07 0.87 6.04 37.21 0.22 1.10 16 17 C 0.05 0.68 1.46 -67.60 -0.10 0.58 16 18 H 0.06 0.98 6.49 -51.93 -0.34 0.64 16 19 C -0.10 -1.32 4.19 -26.73 -0.11 -1.43 16 20 C -0.11 -1.28 3.54 -89.81 -0.32 -1.59 16 21 C -0.14 -1.77 7.63 -25.92 -0.20 -1.97 16 22 C -0.14 -1.57 8.08 -25.92 -0.21 -1.78 16 23 C -0.14 -1.42 7.64 -25.92 -0.20 -1.62 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.97 6.55 -51.93 -0.34 0.63 16 28 H 0.05 1.08 6.29 -51.92 -0.33 0.75 16 29 H 0.07 1.26 6.54 -51.93 -0.34 0.92 16 30 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 31 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.05 0.77 6.64 -51.93 -0.34 0.43 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.04 6.54 -51.93 -0.34 0.70 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.15 5.61 -51.92 -0.29 0.86 16 39 H 0.09 0.91 6.37 -51.93 -0.33 0.58 16 40 H 0.09 1.32 7.90 -51.93 -0.41 0.91 16 41 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -30.16 339.84 -10.05 -40.21 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.09 Total: -0.22 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -1.35 Total: -20.67 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.34 Total: -35.37 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.38 Total: -5.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.16 -10.05 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339774373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.326 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds