Wall clock time and date at job start Mon Mar 30 2020 07:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99831 * 2 1 4 4 H 1.48501 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47227 * 300.00328 * 3 2 1 6 6 H 1.48501 * 109.46881 * 60.00754 * 3 2 1 7 7 C 1.37876 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47188 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46910 * 185.39834 * 11 10 9 13 13 C 1.47008 * 110.99976 * 70.36814 * 12 11 10 14 14 C 1.53096 * 109.25733 * 177.60673 * 13 12 11 15 15 O 1.43010 * 109.25904 * 56.84975 * 14 13 12 16 16 C 1.43021 * 113.73822 * 301.32506 * 15 14 13 17 17 C 1.47014 * 110.99937 * 306.73102 * 12 11 10 18 18 H 1.09000 * 109.50813 * 62.46045 * 17 12 11 19 19 C 1.53003 * 109.50793 * 302.32602 * 17 12 11 20 20 C 1.52993 * 109.47368 * 174.51848 * 19 17 12 21 21 C 1.53782 * 113.61487 * 272.60419 * 20 19 17 22 22 C 1.53777 * 87.08364 * 220.01424 * 21 20 19 23 23 C 1.53776 * 113.61952 * 175.10660 * 20 19 17 24 24 H 0.97009 * 120.00086 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46928 * 60.00713 * 9 7 2 26 26 H 1.08995 * 109.47117 * 300.00472 * 9 7 2 27 27 H 1.08996 * 109.47224 * 59.99753 * 10 9 7 28 28 H 1.09009 * 109.46797 * 300.00180 * 10 9 7 29 29 H 1.08995 * 109.47127 * 65.39623 * 11 10 9 30 30 H 1.08997 * 109.46804 * 305.39884 * 11 10 9 31 31 H 1.09004 * 109.50603 * 57.66770 * 13 12 11 32 32 H 1.08999 * 109.50807 * 297.53960 * 13 12 11 33 33 H 1.09006 * 109.50583 * 176.78151 * 14 13 12 34 34 H 1.09001 * 109.50669 * 296.90632 * 14 13 12 35 35 H 1.08995 * 109.50645 * 178.60326 * 16 15 14 36 36 H 1.08997 * 109.50710 * 298.70219 * 16 15 14 37 37 H 1.09000 * 109.47367 * 294.52349 * 19 17 12 38 38 H 1.09007 * 109.46838 * 54.52086 * 19 17 12 39 39 H 1.08998 * 112.84710 * 43.90864 * 20 19 17 40 40 H 1.08999 * 113.61496 * 334.56551 * 21 20 19 41 41 H 1.09010 * 113.61292 * 105.46951 * 21 20 19 42 42 H 1.09000 * 113.61939 * 270.88875 * 22 21 20 43 43 H 1.08998 * 113.69146 * 139.98976 * 22 21 20 44 44 H 1.09003 * 113.61351 * 254.53230 * 23 20 19 45 45 H 1.09007 * 113.60827 * 25.43155 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4295 -6.1006 0.1291 13 6 3.0141 -6.1395 1.4774 14 6 3.9492 -7.3467 1.5877 15 8 4.9475 -7.2648 0.5670 16 6 4.4132 -7.2258 -0.7591 17 6 3.4828 -6.0173 -0.8931 18 1 4.0548 -5.1002 -0.7525 19 6 2.8457 -6.0150 -2.2842 20 6 3.9290 -5.7912 -3.3410 21 6 4.2126 -4.3072 -3.6279 22 6 4.3234 -4.6962 -5.1115 23 6 3.4106 -5.8901 -4.7854 24 1 -0.4851 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8896 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8906 29 1 0.9284 -5.0875 -0.9357 30 1 0.7828 -5.0043 0.8363 31 1 2.2180 -6.2269 2.2169 32 1 3.5786 -5.2243 1.6560 33 1 4.4288 -7.3473 2.5666 34 1 3.3749 -8.2646 1.4625 35 1 5.2283 -7.1390 -1.4775 36 1 3.8530 -8.1405 -0.9528 37 1 2.3572 -6.9731 -2.4618 38 1 2.1082 -5.2145 -2.3447 39 1 4.8270 -6.3812 -3.1581 40 1 3.3695 -3.6516 -3.4102 41 1 5.1491 -3.9507 -3.1989 42 1 5.3300 -4.9859 -5.4130 43 1 3.8703 -3.9726 -5.7891 44 1 3.6996 -6.8116 -5.2908 45 1 2.3481 -5.6672 -4.8841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339774373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:09 Heat of formation + Delta-G solvation = -60.630655 kcal Electronic energy + Delta-G solvation = -21628.235167 eV Core-core repulsion = 18644.735439 eV Total energy + Delta-G solvation = -2983.499728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19324 -39.44551 -37.63473 -35.49706 -33.72745 -32.99783 -29.90001 -28.71591 -26.85679 -26.44976 -25.25039 -24.21751 -22.76103 -22.68150 -20.25614 -20.18535 -18.56372 -17.46063 -17.29226 -16.69560 -16.56774 -16.26196 -15.79653 -15.65641 -15.47349 -14.92908 -14.80805 -14.21328 -14.13638 -13.73847 -13.42732 -13.31729 -13.26073 -12.86386 -12.69380 -12.59514 -12.51279 -12.38599 -12.23827 -11.95456 -11.71771 -11.46281 -11.37407 -11.30099 -11.16832 -10.97574 -10.89881 -10.60316 -10.52446 -9.26449 -8.24198 -6.35921 1.34715 1.34915 1.48126 2.36101 2.80209 2.95782 3.07999 3.66426 3.75575 3.85763 3.90451 4.02252 4.04220 4.07266 4.21907 4.28364 4.31287 4.41723 4.45938 4.53016 4.61790 4.71635 4.76246 4.82135 4.86103 4.89074 4.90801 4.92761 4.98302 5.07324 5.10112 5.13383 5.17394 5.22696 5.31267 5.44603 5.46466 5.65715 5.68909 5.79895 5.98941 6.05808 6.21012 6.21329 6.79996 7.33387 8.86973 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.005808 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.017152 B = 4819.818065 C = 6090.833278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.122 4.122 11 C 0.062 3.938 12 N -0.527 5.527 13 C 0.010 3.990 14 C 0.068 3.932 15 O -0.405 6.405 16 C 0.072 3.928 17 C 0.049 3.951 18 H 0.031 0.969 19 C -0.096 4.096 20 C -0.105 4.105 21 C -0.151 4.151 22 C -0.138 4.138 23 C -0.129 4.129 24 H 0.264 0.736 25 H -0.007 1.007 26 H -0.009 1.009 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.025 0.975 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 -16.586 -5.007 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.069 0.931 9 C -0.006 4.006 10 C -0.161 4.161 11 C -0.065 4.065 12 N -0.250 5.250 13 C -0.119 4.119 14 C -0.009 4.009 15 O -0.324 6.324 16 C -0.004 4.004 17 C -0.060 4.060 18 H 0.049 0.951 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.189 4.189 22 C -0.175 4.175 23 C -0.166 4.166 24 H 0.073 0.927 25 H 0.011 0.989 26 H 0.009 0.991 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.426 -16.938 -5.030 19.575 hybrid contribution 0.048 2.296 0.327 2.320 sum 8.474 -14.642 -4.702 17.559 Atomic orbital electron populations 1.70089 1.07648 1.27737 1.51592 1.25926 0.95758 1.03145 0.94663 0.85471 0.78937 0.79044 0.78066 1.19032 1.20046 1.20068 1.21653 0.93108 0.92623 1.50636 0.93081 1.18890 0.94146 0.92803 0.94751 1.21954 0.98682 0.95734 0.99741 1.22152 0.94720 0.87384 1.02279 1.62619 1.16307 1.42879 1.03215 1.22893 0.98865 0.98562 0.91544 1.22766 0.89525 0.96507 0.92055 1.87938 1.33800 1.94778 1.15851 1.22850 0.97191 0.96471 0.83938 1.22311 0.92659 0.98193 0.92841 0.95103 1.21540 0.97696 1.02462 0.91668 1.22603 0.98823 0.96320 0.94579 1.23011 1.01019 0.96962 0.97907 1.22816 1.00853 0.98388 0.95469 1.22879 0.99406 0.98994 0.95314 0.92668 0.98856 0.99087 0.94379 0.93253 0.90633 0.91362 0.88859 0.95636 0.86856 0.91195 0.87215 0.91288 0.90095 0.92987 0.87701 0.92410 0.92343 0.88829 0.91899 0.89710 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.72 4.97 29.85 0.15 1.86 16 10 C -0.12 -5.23 4.21 30.59 0.13 -5.10 16 11 C 0.06 2.19 4.79 86.30 0.41 2.60 16 12 N -0.53 -15.54 4.75 -870.01 -4.13 -19.67 16 13 C 0.01 0.26 5.40 86.31 0.47 0.73 16 14 C 0.07 1.53 7.01 72.01 0.50 2.03 16 15 O -0.40 -10.59 10.83 -148.98 -1.61 -12.20 16 16 C 0.07 1.65 6.04 72.02 0.43 2.09 16 17 C 0.05 1.34 1.46 44.93 0.07 1.41 16 18 H 0.03 1.04 6.49 -2.39 -0.02 1.02 16 19 C -0.10 -2.40 4.19 30.59 0.13 -2.28 16 20 C -0.10 -2.26 3.54 -10.27 -0.04 -2.29 16 21 C -0.15 -3.93 7.63 31.12 0.24 -3.70 16 22 C -0.14 -2.82 8.08 31.12 0.25 -2.57 16 23 C -0.13 -2.46 7.64 31.12 0.24 -2.22 16 24 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.04 1.67 6.55 -2.39 -0.02 1.65 16 28 H 0.05 2.13 6.29 -2.38 -0.01 2.11 16 29 H 0.08 2.64 6.54 -2.39 -0.02 2.62 16 30 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 31 H 0.09 2.34 8.08 -2.39 -0.02 2.32 16 32 H 0.03 0.82 6.64 -2.39 -0.02 0.80 16 33 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.11 2.13 6.54 -2.39 -0.02 2.11 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.58 5.61 -2.38 -0.01 1.56 16 39 H 0.10 1.91 6.37 -2.39 -0.02 1.90 16 40 H 0.06 1.84 7.90 -2.39 -0.02 1.82 16 41 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.53 8.10 -2.38 -0.02 1.51 16 Total: -1.00 -65.78 339.84 1.18 -64.60 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.94 Total: 15.43 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.68 Total: -38.38 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -3.84 Total: -76.67 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.61 Total: -12.20 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.78 1.18 -64.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339774373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.965 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds