Wall clock time and date at job start Mon Mar 30 2020 06:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36050 * 116.99855 * 2 1 4 4 N 1.31078 * 125.86699 * 0.02562 * 3 2 1 5 5 N 1.40071 * 108.33865 * 179.97438 * 4 3 2 6 6 C 1.46492 * 126.02987 * 180.02562 * 5 4 3 7 7 C 1.36041 * 107.93110 * 359.73331 * 5 4 3 8 8 C 1.35599 * 107.62543 * 0.42930 * 7 5 4 9 9 N 1.40949 * 126.08268 * 179.83861 * 8 7 5 10 10 C 1.46506 * 120.00292 * 359.68881 * 9 8 7 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46817 * 299.99814 * 11 10 9 13 13 C 1.52997 * 109.47232 * 60.00053 * 11 10 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 11 10 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99910 * 19 17 15 21 21 H 1.48506 * 109.46940 * 210.00033 * 19 17 15 22 22 H 1.48501 * 109.47006 * 329.99902 * 19 17 15 23 23 H 1.08997 * 109.46821 * 300.00485 * 1 2 3 24 24 H 1.09005 * 109.46695 * 60.00271 * 1 2 3 25 25 H 1.08992 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47571 * 89.97098 * 6 5 4 27 27 H 1.09003 * 109.47163 * 209.97283 * 6 5 4 28 28 H 1.09004 * 109.47566 * 329.96978 * 6 5 4 29 29 H 1.08002 * 126.18643 * 180.26618 * 7 5 4 30 30 H 0.97001 * 120.00457 * 179.68610 * 9 8 7 31 31 H 1.09001 * 109.47060 * 300.00388 * 10 9 8 32 32 H 1.09004 * 109.47073 * 59.99877 * 10 9 8 33 33 H 1.09002 * 109.47070 * 60.00180 * 12 11 10 34 34 H 1.09000 * 109.46986 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.47407 * 299.99780 * 12 11 10 36 36 H 1.08998 * 109.47624 * 59.99682 * 13 11 10 37 37 H 1.09000 * 109.47140 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.46777 * 299.99578 * 13 11 10 39 39 H 1.09001 * 109.46997 * 299.99574 * 14 11 10 40 40 H 1.09004 * 109.47298 * 59.99717 * 14 11 10 41 41 H 0.96997 * 120.00125 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 7 1.4488 2.3787 0.0005 5 7 2.4311 3.3773 0.0009 6 6 2.1907 4.8224 0.0020 7 6 3.6475 2.7683 0.0067 8 6 3.4361 1.4289 0.0001 9 7 4.4319 0.4313 -0.0003 10 6 5.8474 0.8092 -0.0001 11 6 6.7122 -0.4529 -0.0012 12 6 6.4055 -1.2824 1.2474 13 6 6.4054 -1.2802 -1.2511 14 6 8.1904 -0.0583 -0.0003 15 6 9.0422 -1.3015 -0.0009 16 1 8.5759 -2.2756 -0.0021 17 6 10.4169 -1.1952 -0.0007 18 7 11.1603 -2.2801 -0.0007 19 14 11.2235 0.4896 0.0008 20 1 11.4372 0.9349 1.4012 21 1 12.5309 0.4132 -0.6994 22 1 10.3436 1.4603 -0.6984 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 2.1309 5.1801 1.0299 27 1 3.0091 5.3273 -0.5113 28 1 1.2533 5.0353 -0.5119 29 1 4.6079 3.2623 0.0125 30 1 4.1801 -0.5054 -0.0007 31 1 6.0659 1.3998 -0.8898 32 1 6.0659 1.3990 0.8902 33 1 5.3524 -1.5635 1.2472 34 1 7.0219 -2.1813 1.2468 35 1 6.6241 -0.6930 2.1378 36 1 6.6238 -0.6894 -2.1407 37 1 7.0212 -2.1796 -1.2517 38 1 5.3523 -1.5614 -1.2512 39 1 8.4092 0.5328 -0.8896 40 1 8.4087 0.5309 0.8904 41 1 12.1274 -2.2054 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353211413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:11 Heat of formation + Delta-G solvation = 40.729312 kcal Electronic energy + Delta-G solvation = -20571.431387 eV Core-core repulsion = 17488.786614 eV Total energy + Delta-G solvation = -3082.644773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12591 -38.11265 -37.65181 -34.22783 -32.45598 -31.87517 -28.97445 -27.97501 -27.51843 -26.41100 -26.14413 -24.81836 -22.34335 -20.96170 -20.35575 -18.32723 -17.39841 -16.78312 -16.38522 -16.16523 -15.17969 -14.88397 -14.81825 -14.53149 -14.16720 -13.93631 -13.38618 -12.96300 -12.83713 -12.71924 -12.41713 -12.37759 -12.18427 -11.96012 -11.25319 -11.14308 -11.02861 -10.93923 -10.73911 -10.55207 -10.36548 -9.99541 -9.73680 -9.60619 -9.40037 -8.92654 -8.78114 -8.50478 -6.74552 -6.00679 -3.97289 1.91083 2.36146 3.06122 3.28118 3.32071 3.39960 3.42686 4.02586 4.47673 4.59154 4.99670 5.06251 5.10288 5.16985 5.28046 5.32245 5.33869 5.46855 5.53520 5.64216 5.74724 5.81788 5.90969 6.18543 6.26300 6.31716 6.48467 6.67002 6.72094 6.94164 7.03476 7.11579 7.14606 7.26847 7.29472 7.43717 7.63127 7.80870 7.90585 8.26566 8.58276 9.04786 9.62015 11.12375 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.004216 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.580387 B = 6639.990149 C = 7462.597481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.293 6.293 3 C 0.224 3.776 4 N -0.329 5.329 5 N -0.375 5.375 6 C 0.119 3.881 7 C -0.018 4.018 8 C 0.079 3.921 9 N -0.734 5.734 10 C 0.143 3.857 11 C -0.060 4.060 12 C -0.127 4.127 13 C -0.126 4.126 14 C -0.002 4.002 15 C -0.509 4.509 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.876 3.124 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.266 1.266 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.175 0.825 30 H 0.402 0.598 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.942 11.168 -0.095 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.197 6.197 3 C 0.016 3.984 4 N -0.168 5.168 5 N -0.169 5.169 6 C -0.022 4.022 7 C -0.164 4.164 8 C -0.030 4.030 9 N -0.373 5.373 10 C 0.019 3.981 11 C -0.061 4.061 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.039 4.039 15 C -0.547 4.547 16 H 0.096 0.904 17 C -0.135 4.135 18 N -0.544 5.544 19 Si 0.703 3.297 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.191 1.191 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.192 0.808 30 H 0.238 0.762 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.624 11.597 -0.102 22.795 hybrid contribution 1.073 0.321 0.041 1.120 sum -18.552 11.918 -0.061 22.050 Atomic orbital electron populations 1.22876 0.78013 1.03142 1.01745 1.86282 1.21762 1.21562 1.90092 1.20234 0.90085 0.85369 1.02689 1.77099 1.14501 0.94641 1.30591 1.47266 1.02390 1.04891 1.62333 1.21666 1.03496 0.74342 1.02740 1.21592 0.90734 0.90998 1.13063 1.17123 0.86058 0.89341 1.10451 1.44098 1.02239 1.05401 1.85538 1.21407 0.79545 0.97682 0.99479 1.20611 0.96472 0.93260 0.95719 1.21741 0.99030 1.00957 0.96680 1.21733 0.99031 1.00946 0.96664 1.19593 0.90494 0.97635 0.96217 1.21119 0.90496 0.93031 1.50030 0.90408 1.25012 0.97496 0.96161 0.94867 1.69905 1.05127 1.27844 1.51564 0.86847 0.78842 0.85587 0.78393 1.20441 1.21577 1.19064 0.92816 0.92807 0.88523 0.91458 0.89668 0.89899 0.80827 0.76165 0.93517 0.93523 0.94719 0.91247 0.93665 0.93654 0.91253 0.94717 0.96542 0.96990 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.69 101.05 1.08 1.47 16 2 O -0.29 -4.16 10.58 -19.90 -0.21 -4.37 16 3 C 0.22 3.42 7.90 -16.97 -0.13 3.29 16 4 N -0.33 -4.78 11.96 30.64 0.37 -4.41 16 5 N -0.38 -4.66 4.04 -67.80 -0.27 -4.94 16 6 C 0.12 0.88 11.48 59.84 0.69 1.57 16 7 C -0.02 -0.23 10.85 -16.63 -0.18 -0.41 16 8 C 0.08 1.21 7.02 -83.70 -0.59 0.62 16 9 N -0.73 -11.42 5.21 -58.66 -0.31 -11.73 16 10 C 0.14 2.34 4.47 -4.04 -0.02 2.32 16 11 C -0.06 -1.13 0.54 -154.51 -0.08 -1.22 16 12 C -0.13 -2.34 8.05 37.16 0.30 -2.05 16 13 C -0.13 -2.34 8.05 37.16 0.30 -2.04 16 14 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 15 C -0.51 -13.78 8.20 -34.44 -0.28 -14.06 16 16 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 17 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 19 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.17 1.92 7.85 -52.49 -0.41 1.50 16 30 H 0.40 6.31 6.29 -40.82 -0.26 6.06 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.56 6.86 -51.93 -0.36 0.21 16 34 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 38 H 0.03 0.56 6.86 -51.93 -0.36 0.21 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -31.94 331.33 -4.97 -36.91 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.54 Total: 2.40 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 0.90 Total: -8.88 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.56 Total: -47.76 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.21 Total: -4.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.94 -4.97 -36.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353211413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.642 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds