Wall clock time and date at job start Mon Mar 30 2020 06:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36050 * 116.99855 * 2 1 4 4 N 1.31078 * 125.86699 * 0.02562 * 3 2 1 5 5 N 1.40071 * 108.33865 * 179.97438 * 4 3 2 6 6 C 1.46492 * 126.02987 * 180.02562 * 5 4 3 7 7 C 1.36041 * 107.93110 * 359.73331 * 5 4 3 8 8 C 1.35599 * 107.62543 * 0.42930 * 7 5 4 9 9 N 1.40949 * 126.08268 * 179.83861 * 8 7 5 10 10 C 1.46506 * 120.00292 * 359.68881 * 9 8 7 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46817 * 299.99814 * 11 10 9 13 13 C 1.52997 * 109.47232 * 60.00053 * 11 10 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 11 10 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99910 * 19 17 15 21 21 H 1.48506 * 109.46940 * 210.00033 * 19 17 15 22 22 H 1.48501 * 109.47006 * 329.99902 * 19 17 15 23 23 H 1.08997 * 109.46821 * 300.00485 * 1 2 3 24 24 H 1.09005 * 109.46695 * 60.00271 * 1 2 3 25 25 H 1.08992 * 109.47138 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47571 * 89.97098 * 6 5 4 27 27 H 1.09003 * 109.47163 * 209.97283 * 6 5 4 28 28 H 1.09004 * 109.47566 * 329.96978 * 6 5 4 29 29 H 1.08002 * 126.18643 * 180.26618 * 7 5 4 30 30 H 0.97001 * 120.00457 * 179.68610 * 9 8 7 31 31 H 1.09001 * 109.47060 * 300.00388 * 10 9 8 32 32 H 1.09004 * 109.47073 * 59.99877 * 10 9 8 33 33 H 1.09002 * 109.47070 * 60.00180 * 12 11 10 34 34 H 1.09000 * 109.46986 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.47407 * 299.99780 * 12 11 10 36 36 H 1.08998 * 109.47624 * 59.99682 * 13 11 10 37 37 H 1.09000 * 109.47140 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.46777 * 299.99578 * 13 11 10 39 39 H 1.09001 * 109.46997 * 299.99574 * 14 11 10 40 40 H 1.09004 * 109.47298 * 59.99717 * 14 11 10 41 41 H 0.96997 * 120.00125 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 7 1.4488 2.3787 0.0005 5 7 2.4311 3.3773 0.0009 6 6 2.1907 4.8224 0.0020 7 6 3.6475 2.7683 0.0067 8 6 3.4361 1.4289 0.0001 9 7 4.4319 0.4313 -0.0003 10 6 5.8474 0.8092 -0.0001 11 6 6.7122 -0.4529 -0.0012 12 6 6.4055 -1.2824 1.2474 13 6 6.4054 -1.2802 -1.2511 14 6 8.1904 -0.0583 -0.0003 15 6 9.0422 -1.3015 -0.0009 16 1 8.5759 -2.2756 -0.0021 17 6 10.4169 -1.1952 -0.0007 18 7 11.1603 -2.2801 -0.0007 19 14 11.2235 0.4896 0.0008 20 1 11.4372 0.9349 1.4012 21 1 12.5309 0.4132 -0.6994 22 1 10.3436 1.4603 -0.6984 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 2.1309 5.1801 1.0299 27 1 3.0091 5.3273 -0.5113 28 1 1.2533 5.0353 -0.5119 29 1 4.6079 3.2623 0.0125 30 1 4.1801 -0.5054 -0.0007 31 1 6.0659 1.3998 -0.8898 32 1 6.0659 1.3990 0.8902 33 1 5.3524 -1.5635 1.2472 34 1 7.0219 -2.1813 1.2468 35 1 6.6241 -0.6930 2.1378 36 1 6.6238 -0.6894 -2.1407 37 1 7.0212 -2.1796 -1.2517 38 1 5.3523 -1.5614 -1.2512 39 1 8.4092 0.5328 -0.8896 40 1 8.4087 0.5309 0.8904 41 1 12.1274 -2.2054 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353211413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:10 Heat of formation + Delta-G solvation = 17.593400 kcal Electronic energy + Delta-G solvation = -20572.434636 eV Core-core repulsion = 17488.786614 eV Total energy + Delta-G solvation = -3083.648021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11883 -39.17616 -39.01000 -35.58025 -34.20545 -33.00799 -30.27713 -29.22708 -28.74625 -27.94125 -27.28619 -25.90072 -24.08982 -21.96834 -21.46165 -19.64455 -18.85518 -18.61848 -17.36807 -17.11757 -16.38211 -16.08431 -15.85026 -15.73855 -15.49622 -15.38209 -14.94796 -14.26589 -14.20224 -14.09629 -13.57211 -13.48829 -13.31332 -12.91493 -12.78079 -12.73734 -12.61456 -12.24317 -12.07035 -12.00072 -11.80683 -11.65908 -11.49000 -11.05520 -10.82522 -10.80793 -10.66296 -9.75695 -8.18051 -7.82309 -6.18788 0.92141 1.40714 1.42397 1.51435 1.53328 1.99127 2.37523 2.43731 2.90793 3.17467 3.76894 4.07396 4.14462 4.17409 4.27648 4.37838 4.39730 4.56761 4.60805 4.66811 4.73999 4.79306 4.81340 4.84005 4.85146 4.95294 5.04911 5.09775 5.14426 5.36695 5.44985 5.45985 5.59655 5.74785 5.81341 6.05613 6.34795 6.42414 6.58537 6.82511 6.89208 7.09398 7.43749 8.98191 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.004216 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.580387 B = 6639.990149 C = 7462.597481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.206 3.794 4 N -0.346 5.346 5 N -0.370 5.370 6 C 0.107 3.893 7 C -0.005 4.005 8 C 0.047 3.953 9 N -0.737 5.737 10 C 0.158 3.842 11 C -0.058 4.058 12 C -0.120 4.120 13 C -0.120 4.120 14 C 0.000 4.000 15 C -0.505 4.505 16 H 0.043 0.957 17 C 0.000 4.000 18 N -0.957 5.957 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.243 1.243 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.199 0.801 30 H 0.399 0.601 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.142 14.172 -0.105 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.216 6.216 3 C 0.000 4.000 4 N -0.186 5.186 5 N -0.164 5.164 6 C -0.032 4.032 7 C -0.153 4.153 8 C -0.061 4.061 9 N -0.376 5.376 10 C 0.033 3.967 11 C -0.058 4.058 12 C -0.177 4.177 13 C -0.177 4.177 14 C -0.038 4.038 15 C -0.543 4.543 16 H 0.061 0.939 17 C -0.196 4.196 18 N -0.599 5.599 19 Si 0.766 3.234 20 H -0.196 1.196 21 H -0.218 1.218 22 H -0.166 1.166 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.140 0.860 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.216 0.784 30 H 0.234 0.766 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.882 14.641 -0.112 25.504 hybrid contribution 1.335 -0.620 0.048 1.473 sum -19.548 14.021 -0.064 24.056 Atomic orbital electron populations 1.23085 0.76304 1.04862 1.01764 1.86244 1.23585 1.21596 1.90136 1.20441 0.90433 0.85794 1.03362 1.77068 1.15356 0.94977 1.31220 1.47801 1.01871 1.06206 1.60485 1.22095 1.05109 0.71755 1.04286 1.22032 0.91849 0.90614 1.10758 1.17365 0.86040 0.90048 1.12686 1.43897 1.01833 1.05388 1.86482 1.21140 0.79564 0.95805 1.00157 1.20509 0.94775 0.94753 0.95755 1.21647 0.99761 0.99575 0.96756 1.21641 0.99766 0.99568 0.96738 1.19548 0.92303 0.95491 0.96431 1.21431 0.91029 0.93594 1.48250 0.93871 1.25940 0.98401 1.00239 0.94971 1.70071 1.05387 1.30525 1.53869 0.85786 0.77806 0.80921 0.78897 1.19593 1.21814 1.16633 0.92774 0.92742 0.86008 0.89965 0.86998 0.89113 0.78445 0.76574 0.92846 0.92802 0.92555 0.94377 0.93447 0.93454 0.94372 0.92552 0.96151 0.96326 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.69 113.37 1.21 1.88 16 2 O -0.31 -8.57 10.58 -94.12 -1.00 -9.57 16 3 C 0.21 6.04 7.90 85.39 0.67 6.71 16 4 N -0.35 -9.45 11.96 -170.22 -2.04 -11.49 16 5 N -0.37 -8.16 4.04 -368.43 -1.49 -9.65 16 6 C 0.11 1.21 11.48 127.77 1.47 2.68 16 7 C 0.00 -0.12 10.85 83.43 0.90 0.79 16 8 C 0.05 1.33 7.02 37.65 0.26 1.59 16 9 N -0.74 -21.45 5.21 -339.51 -1.77 -23.22 16 10 C 0.16 4.74 4.47 86.38 0.39 5.12 16 11 C -0.06 -2.10 0.54 -52.18 -0.03 -2.13 16 12 C -0.12 -4.39 8.05 71.98 0.58 -3.81 16 13 C -0.12 -4.38 8.05 71.98 0.58 -3.81 16 14 C 0.00 0.00 3.11 29.85 0.09 0.10 16 15 C -0.50 -27.82 8.20 25.60 0.21 -27.61 16 16 H 0.04 2.62 5.92 -2.91 -0.02 2.60 16 17 C 0.00 0.00 5.47 84.66 0.46 0.46 16 18 N -0.96 -59.76 13.96 21.45 0.30 -59.46 16 19 Si 0.94 43.58 27.47 68.60 1.88 45.46 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.24 -10.26 6.54 99.48 0.65 -9.60 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.20 3.52 7.85 -2.91 -0.02 3.50 16 30 H 0.40 11.92 6.29 -92.71 -0.58 11.34 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.06 1.79 6.86 -2.39 -0.02 1.78 16 34 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 38 H 0.06 1.79 6.86 -2.39 -0.02 1.78 16 39 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 40 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -70.13 331.33 3.08 -67.06 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.38 Total: 18.89 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 6.81 Total: -18.02 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -5.00 Total: -103.82 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.00 Total: -9.57 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -70.13 3.08 -67.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353211413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.649 kcal (2) G-P(sol) polarization free energy of solvation -70.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds