Wall clock time and date at job start Mon Mar 30 2020 07:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47064 * 239.99984 * 3 2 1 5 5 H 1.48497 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46991 * 119.99788 * 3 2 1 7 7 C 1.37877 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99951 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00217 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47539 * 180.02562 * 9 7 2 11 11 C 1.46843 * 111.00625 * 169.99757 * 10 9 7 12 12 C 1.53036 * 109.52730 * 185.84022 * 11 10 9 13 13 C 1.53122 * 109.27453 * 300.82188 * 12 11 10 14 14 O 1.42902 * 109.52107 * 177.55912 * 13 12 11 15 15 C 1.42898 * 114.00186 * 149.99829 * 14 13 12 16 16 C 1.52997 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.54267 * 110.03373 * 292.91285 * 16 15 14 18 18 C 1.54968 * 104.16137 * 217.13581 * 17 16 15 19 19 C 1.54884 * 102.77441 * 37.88396 * 18 17 16 20 20 C 1.53874 * 110.03593 * 175.69205 * 16 15 14 21 21 C 1.53111 * 109.16321 * 57.65644 * 13 12 11 22 22 C 1.46852 * 111.00038 * 294.21132 * 10 9 7 23 23 H 0.97003 * 119.99857 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47303 * 59.99744 * 9 7 2 25 25 H 1.09005 * 109.47316 * 300.00151 * 9 7 2 26 26 H 1.09006 * 109.45861 * 65.82373 * 11 10 9 27 27 H 1.08993 * 109.45507 * 305.85563 * 11 10 9 28 28 H 1.08998 * 109.50262 * 180.88020 * 12 11 10 29 29 H 1.08998 * 109.50257 * 60.76257 * 12 11 10 30 30 H 1.09000 * 109.52169 * 297.68160 * 13 12 11 31 31 H 1.09002 * 109.47259 * 300.00293 * 15 14 13 32 32 H 1.09001 * 109.47074 * 60.00315 * 15 14 13 33 33 H 1.09004 * 110.01939 * 54.29674 * 16 15 14 34 34 H 1.09001 * 110.48609 * 335.77840 * 17 16 15 35 35 H 1.08999 * 110.49311 * 98.42344 * 17 16 15 36 36 H 1.08997 * 110.72048 * 279.57487 * 18 17 16 37 37 H 1.08993 * 110.92252 * 156.29196 * 18 17 16 38 38 H 1.09009 * 110.48779 * 203.40596 * 19 18 17 39 39 H 1.09001 * 110.59973 * 80.82109 * 19 18 17 40 40 H 1.09003 * 110.03243 * 238.56963 * 20 16 15 41 41 H 1.08996 * 110.02723 * 359.95243 * 20 16 15 42 42 H 1.09007 * 109.50480 * 62.28430 * 21 13 12 43 43 H 1.09001 * 109.50620 * 182.40322 * 21 13 12 44 44 H 1.09001 * 109.46027 * 294.17876 * 22 10 9 45 45 H 1.09000 * 109.45723 * 54.15124 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0015 11 6 1.5212 -4.8932 0.2355 12 6 2.5576 -6.0107 0.3740 13 6 3.3923 -6.0875 -0.9074 14 8 4.3989 -7.0914 -0.7621 15 6 4.7693 -7.7249 -1.9883 16 6 5.8467 -8.7759 -1.7142 17 6 7.1515 -8.0893 -1.2602 18 6 8.2728 -8.9371 -1.9124 19 6 7.6732 -9.2920 -3.2957 20 6 6.1783 -9.5408 -3.0076 21 6 4.0556 -4.7303 -1.1572 22 6 2.9759 -3.6499 -1.2513 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 0.8606 -5.1124 -0.6034 27 1 0.9347 -4.8263 1.1517 28 1 2.0486 -6.9611 0.5343 29 1 3.2099 -5.7991 1.2212 30 1 2.7462 -6.3386 -1.7485 31 1 3.8953 -8.2067 -2.4267 32 1 5.1577 -6.9778 -2.6804 33 1 5.5040 -9.4705 -0.9471 34 1 7.1889 -7.0626 -1.6244 35 1 7.2371 -8.1130 -0.1738 36 1 8.4622 -9.8391 -1.3306 37 1 9.1862 -8.3533 -2.0256 38 1 8.1400 -10.1930 -3.6940 39 1 7.7947 -8.4614 -3.9909 40 1 5.9971 -10.6065 -2.8680 41 1 5.5709 -9.1637 -3.8303 42 1 4.7316 -4.4985 -0.3341 43 1 4.6170 -4.7659 -2.0909 44 1 2.3084 -3.8748 -2.0832 45 1 3.4458 -2.6801 -1.4147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365911556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:03 Heat of formation + Delta-G solvation = -73.631184 kcal Electronic energy + Delta-G solvation = -20747.491651 eV Core-core repulsion = 17763.428179 eV Total energy + Delta-G solvation = -2984.063473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.27063 -38.23216 -36.45504 -33.12854 -31.54431 -30.36370 -29.99523 -28.85431 -26.68916 -24.57777 -23.35066 -22.48584 -21.13839 -20.83449 -19.88856 -19.20726 -16.87166 -16.28572 -15.90292 -15.56685 -15.18398 -14.84188 -14.28398 -14.20152 -13.82174 -13.53289 -13.48250 -12.93432 -12.60930 -12.41740 -11.98042 -11.77533 -11.44560 -11.35198 -11.30071 -11.22696 -11.14851 -10.88285 -10.84137 -10.74759 -10.66629 -10.54936 -10.36811 -10.29184 -10.16709 -9.73038 -9.28483 -9.08017 -8.42427 -7.21876 -6.01876 -4.03274 3.34265 3.38136 3.41346 3.69200 4.41299 4.43156 4.43169 4.60308 4.90096 5.04612 5.13390 5.21761 5.23683 5.29122 5.33565 5.34062 5.41952 5.43607 5.45660 5.58238 5.60101 5.68296 5.72248 5.83999 5.87647 5.89444 5.95683 6.04106 6.08355 6.12975 6.22602 6.24908 6.27393 6.41654 6.53761 6.69849 6.73313 7.31689 7.35947 7.42898 7.81358 8.10897 8.22295 8.56873 9.04284 9.60925 11.09021 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032737 B = 0.003341 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.093689 B = 8379.513241 C = 8906.118183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.058 3.942 12 C -0.108 4.108 13 C 0.092 3.908 14 O -0.381 6.381 15 C 0.069 3.931 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.135 4.135 22 C 0.068 3.932 23 H 0.262 0.738 24 H -0.010 1.010 25 H 0.031 0.969 26 H 0.020 0.980 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.017 0.983 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.578 -18.615 -5.601 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.071 4.071 12 C -0.146 4.146 13 C 0.035 3.965 14 O -0.301 6.301 15 C -0.008 4.008 16 C -0.109 4.109 17 C -0.151 4.151 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.173 4.173 22 C -0.061 4.061 23 H 0.071 0.929 24 H 0.008 0.992 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.811 -18.455 -5.039 22.483 hybrid contribution -0.406 0.900 -0.975 1.388 sum 11.405 -17.555 -6.014 21.781 Atomic orbital electron populations 1.69951 1.06073 1.26876 1.51010 1.24993 0.94867 0.99314 0.95450 0.86557 0.79434 0.82730 0.78671 1.20286 1.21372 1.20123 1.21137 0.93483 0.89961 1.50082 0.91880 1.19702 0.90043 0.87333 0.96083 1.62046 1.27827 1.02676 1.33669 1.21978 0.94568 0.90215 1.00335 1.21638 0.97521 0.98047 0.97420 1.22201 0.88696 0.87501 0.98128 1.87900 1.58408 1.53481 1.30302 1.22627 0.96511 0.94379 0.87257 1.21759 0.95041 0.96413 0.97722 1.22368 0.93022 0.99050 1.00627 1.22543 0.98128 0.99817 0.96038 1.22356 0.95226 1.01177 0.97481 1.22138 0.96547 1.00005 0.96968 1.22110 0.99079 0.94491 1.01627 1.21889 0.94687 0.98864 0.90659 0.92877 0.99207 0.95126 0.96141 0.90813 0.91957 0.90459 0.93091 0.93918 0.93496 0.90383 0.91357 0.91377 0.91684 0.91681 0.91855 0.91639 0.91591 0.91683 0.90532 0.92584 0.96440 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.38 8.43 -34.44 -0.29 -14.67 16 8 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 9 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 10 N -0.54 -11.82 4.65 -236.12 -1.10 -12.92 16 11 C 0.06 1.07 5.46 -3.84 -0.02 1.05 16 12 C -0.11 -1.71 5.75 -26.65 -0.15 -1.86 16 13 C 0.09 1.40 2.68 -26.61 -0.07 1.33 16 14 O -0.38 -5.48 9.83 -35.23 -0.35 -5.82 16 15 C 0.07 0.80 4.80 37.16 0.18 0.97 16 16 C -0.09 -0.89 3.19 -89.50 -0.29 -1.18 16 17 C -0.11 -1.12 6.22 -25.03 -0.16 -1.27 16 18 C -0.13 -1.03 6.91 -24.70 -0.17 -1.20 16 19 C -0.12 -0.94 6.83 -25.08 -0.17 -1.11 16 20 C -0.12 -0.96 6.46 -25.61 -0.17 -1.12 16 21 C -0.13 -2.21 5.72 -26.66 -0.15 -2.36 16 22 C 0.07 1.34 5.30 -3.83 -0.02 1.32 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 24 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 25 H 0.03 0.86 7.99 -51.93 -0.41 0.44 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 1.34 8.01 -51.93 -0.42 0.93 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 31 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.05 0.53 7.84 -51.93 -0.41 0.13 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 1.86 6.70 -51.93 -0.35 1.51 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -29.67 347.60 -10.72 -40.39 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -8.63 Total: -3.89 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.60 Total: -13.56 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.36 Total: -39.09 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.35 Total: -5.82 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.67 -10.72 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365911556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.245 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds