Wall clock time and date at job start Mon Mar 30 2020 07:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47064 * 239.99984 * 3 2 1 5 5 H 1.48497 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46991 * 119.99788 * 3 2 1 7 7 C 1.37877 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99951 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00217 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47539 * 180.02562 * 9 7 2 11 11 C 1.46843 * 111.00625 * 169.99757 * 10 9 7 12 12 C 1.53036 * 109.52730 * 185.84022 * 11 10 9 13 13 C 1.53122 * 109.27453 * 300.82188 * 12 11 10 14 14 O 1.42902 * 109.52107 * 177.55912 * 13 12 11 15 15 C 1.42898 * 114.00186 * 149.99829 * 14 13 12 16 16 C 1.52997 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.54267 * 110.03373 * 292.91285 * 16 15 14 18 18 C 1.54968 * 104.16137 * 217.13581 * 17 16 15 19 19 C 1.54884 * 102.77441 * 37.88396 * 18 17 16 20 20 C 1.53874 * 110.03593 * 175.69205 * 16 15 14 21 21 C 1.53111 * 109.16321 * 57.65644 * 13 12 11 22 22 C 1.46852 * 111.00038 * 294.21132 * 10 9 7 23 23 H 0.97003 * 119.99857 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47303 * 59.99744 * 9 7 2 25 25 H 1.09005 * 109.47316 * 300.00151 * 9 7 2 26 26 H 1.09006 * 109.45861 * 65.82373 * 11 10 9 27 27 H 1.08993 * 109.45507 * 305.85563 * 11 10 9 28 28 H 1.08998 * 109.50262 * 180.88020 * 12 11 10 29 29 H 1.08998 * 109.50257 * 60.76257 * 12 11 10 30 30 H 1.09000 * 109.52169 * 297.68160 * 13 12 11 31 31 H 1.09002 * 109.47259 * 300.00293 * 15 14 13 32 32 H 1.09001 * 109.47074 * 60.00315 * 15 14 13 33 33 H 1.09004 * 110.01939 * 54.29674 * 16 15 14 34 34 H 1.09001 * 110.48609 * 335.77840 * 17 16 15 35 35 H 1.08999 * 110.49311 * 98.42344 * 17 16 15 36 36 H 1.08997 * 110.72048 * 279.57487 * 18 17 16 37 37 H 1.08993 * 110.92252 * 156.29196 * 18 17 16 38 38 H 1.09009 * 110.48779 * 203.40596 * 19 18 17 39 39 H 1.09001 * 110.59973 * 80.82109 * 19 18 17 40 40 H 1.09003 * 110.03243 * 238.56963 * 20 16 15 41 41 H 1.08996 * 110.02723 * 359.95243 * 20 16 15 42 42 H 1.09007 * 109.50480 * 62.28430 * 21 13 12 43 43 H 1.09001 * 109.50620 * 182.40322 * 21 13 12 44 44 H 1.09001 * 109.46027 * 294.17876 * 22 10 9 45 45 H 1.09000 * 109.45723 * 54.15124 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2055 -3.6157 -0.0015 11 6 1.5212 -4.8932 0.2355 12 6 2.5576 -6.0107 0.3740 13 6 3.3923 -6.0875 -0.9074 14 8 4.3989 -7.0914 -0.7621 15 6 4.7693 -7.7249 -1.9883 16 6 5.8467 -8.7759 -1.7142 17 6 7.1515 -8.0893 -1.2602 18 6 8.2728 -8.9371 -1.9124 19 6 7.6732 -9.2920 -3.2957 20 6 6.1783 -9.5408 -3.0076 21 6 4.0556 -4.7303 -1.1572 22 6 2.9759 -3.6499 -1.2513 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 0.8606 -5.1124 -0.6034 27 1 0.9347 -4.8263 1.1517 28 1 2.0486 -6.9611 0.5343 29 1 3.2099 -5.7991 1.2212 30 1 2.7462 -6.3386 -1.7485 31 1 3.8953 -8.2067 -2.4267 32 1 5.1577 -6.9778 -2.6804 33 1 5.5040 -9.4705 -0.9471 34 1 7.1889 -7.0626 -1.6244 35 1 7.2371 -8.1130 -0.1738 36 1 8.4622 -9.8391 -1.3306 37 1 9.1862 -8.3533 -2.0256 38 1 8.1400 -10.1930 -3.6940 39 1 7.7947 -8.4614 -3.9909 40 1 5.9971 -10.6065 -2.8680 41 1 5.5709 -9.1637 -3.8303 42 1 4.7316 -4.4985 -0.3341 43 1 4.6170 -4.7659 -2.0909 44 1 2.3084 -3.8748 -2.0832 45 1 3.4458 -2.6801 -1.4147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365911556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:02 Heat of formation + Delta-G solvation = -90.494494 kcal Electronic energy + Delta-G solvation = -20748.222899 eV Core-core repulsion = 17763.428179 eV Total energy + Delta-G solvation = -2984.794721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44893 -39.27383 -37.69970 -35.09799 -33.14398 -31.82775 -30.94214 -29.52922 -28.63077 -25.64774 -24.94749 -23.92678 -22.86393 -21.51126 -20.92414 -20.36339 -18.46851 -17.90406 -17.16721 -16.56610 -16.40490 -16.08130 -15.87453 -15.61540 -15.16546 -14.92358 -14.37073 -14.22977 -14.09612 -13.67027 -13.64433 -13.33107 -12.96612 -12.75060 -12.55202 -12.32537 -12.15263 -12.12320 -12.05033 -11.95278 -11.87033 -11.80262 -11.55193 -11.43964 -11.34808 -11.27028 -11.18254 -10.62131 -10.33371 -9.03432 -8.21431 -6.31828 1.40540 1.44003 1.51915 2.39770 2.64265 3.10624 3.27381 3.71715 3.73894 3.81687 3.88105 3.90849 4.15726 4.27042 4.34563 4.39422 4.45137 4.46899 4.55724 4.59709 4.62728 4.71612 4.77399 4.80378 4.86396 4.90543 4.93909 4.97580 5.06861 5.08830 5.11960 5.12443 5.19170 5.26963 5.29729 5.37309 5.39290 5.48699 5.52081 5.64248 6.04315 6.32303 6.34756 6.63433 6.84047 7.37955 8.89575 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032737 B = 0.003341 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.093689 B = 8379.513241 C = 8906.118183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.547 5.547 11 C 0.056 3.944 12 C -0.100 4.100 13 C 0.098 3.902 14 O -0.390 6.390 15 C 0.063 3.937 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.124 4.124 22 C 0.069 3.931 23 H 0.265 0.735 24 H -0.038 1.038 25 H 0.005 0.995 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.017 0.983 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 -19.703 -6.387 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.272 5.272 11 C -0.072 4.072 12 C -0.137 4.137 13 C 0.040 3.960 14 O -0.310 6.310 15 C -0.013 4.013 16 C -0.108 4.108 17 C -0.154 4.154 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.059 4.059 23 H 0.074 0.926 24 H -0.020 1.020 25 H 0.023 0.977 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.035 0.965 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.346 -19.573 -5.829 24.397 hybrid contribution -0.889 1.177 -0.732 1.647 sum 12.457 -18.396 -6.560 23.165 Atomic orbital electron populations 1.70079 1.07738 1.28023 1.51672 1.25924 0.95763 1.03222 0.94725 0.85431 0.78170 0.77845 0.79155 1.19141 1.20733 1.19361 1.21441 0.93607 0.91120 1.50257 0.91956 1.19354 0.90074 0.88905 0.93473 1.61976 1.27125 1.03092 1.35020 1.22057 0.95454 0.89412 1.00273 1.21541 0.96832 0.97808 0.97555 1.22036 0.88880 0.87070 0.97987 1.87894 1.58032 1.53107 1.31929 1.22846 0.97443 0.94718 0.86292 1.21778 0.94353 0.95977 0.98699 1.22368 0.94080 0.98845 1.00136 1.22536 0.97640 0.99758 0.96314 1.22369 0.94883 1.01808 0.97064 1.22138 0.96927 1.00340 0.95965 1.21994 0.97747 0.94095 1.02335 1.21865 0.95167 0.99212 0.89640 0.92622 1.01993 0.97694 0.95798 0.91107 0.89426 0.91328 0.92041 0.92868 0.93323 0.90739 0.92490 0.92368 0.91055 0.91268 0.90493 0.91715 0.90528 0.91289 0.91603 0.90486 0.96492 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.53 -30.43 8.43 25.60 0.22 -30.21 16 8 H 0.06 3.54 7.12 -2.91 -0.02 3.52 16 9 C 0.21 11.40 4.72 85.56 0.40 11.81 16 10 N -0.55 -24.53 4.65 -900.94 -4.19 -28.72 16 11 C 0.06 2.07 5.46 86.33 0.47 2.54 16 12 C -0.10 -3.00 5.75 30.65 0.18 -2.82 16 13 C 0.10 2.80 2.68 30.67 0.08 2.88 16 14 O -0.39 -10.44 9.83 -148.98 -1.46 -11.91 16 15 C 0.06 1.32 4.80 71.98 0.35 1.67 16 16 C -0.09 -1.59 3.19 -10.07 -0.03 -1.62 16 17 C -0.12 -2.15 6.22 31.70 0.20 -1.96 16 18 C -0.13 -1.77 6.91 31.91 0.22 -1.55 16 19 C -0.12 -1.56 6.83 31.67 0.22 -1.35 16 20 C -0.12 -1.57 6.46 31.32 0.20 -1.37 16 21 C -0.12 -3.92 5.72 30.64 0.18 -3.75 16 22 C 0.07 2.77 5.30 86.32 0.46 3.23 16 23 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 24 H -0.04 -2.22 8.12 -2.39 -0.02 -2.24 16 25 H 0.00 0.29 7.99 -2.38 -0.02 0.27 16 26 H 0.02 0.86 8.14 -2.38 -0.02 0.85 16 27 H 0.07 2.61 8.01 -2.39 -0.02 2.59 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 1.65 7.79 -2.39 -0.02 1.63 16 31 H 0.05 1.01 8.09 -2.39 -0.02 0.99 16 32 H 0.05 1.00 7.84 -2.39 -0.02 0.98 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.06 1.17 7.77 -2.39 -0.02 1.15 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 42 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.08 2.12 7.96 -2.39 -0.02 2.10 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 2.84 6.70 -2.39 -0.02 2.82 16 Total: -1.00 -64.00 347.60 1.16 -62.83 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.91 Total: 9.63 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.59 Total: -21.95 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.90 Total: -85.37 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.46 Total: -11.91 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.00 1.16 -62.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365911556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.660 kcal (2) G-P(sol) polarization free energy of solvation -63.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds