Wall clock time and date at job start Mon Mar 30 2020 07:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48495 * 109.47123 * 239.99840 * 3 2 1 5 5 H 1.48494 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46850 * 119.99856 * 3 2 1 7 7 C 1.37871 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00180 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46976 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47327 * 180.02562 * 10 9 7 12 12 C 1.47015 * 111.00294 * 66.36105 * 11 10 9 13 13 C 1.53093 * 109.26056 * 182.39421 * 12 11 10 14 14 O 1.43015 * 109.25957 * 303.15203 * 13 12 11 15 15 C 1.43017 * 113.73701 * 58.67103 * 14 13 12 16 16 H 1.09004 * 109.50547 * 61.26158 * 15 14 13 17 17 C 1.52995 * 109.50342 * 181.39241 * 15 14 13 18 18 C 1.52996 * 109.47175 * 60.00400 * 17 15 14 19 19 C 1.53005 * 109.47329 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.46789 * 59.99681 * 19 18 17 21 21 C 1.53000 * 109.47015 * 299.99961 * 20 19 18 22 22 C 1.52995 * 109.47008 * 60.00530 * 21 20 19 23 23 C 1.47015 * 111.00452 * 189.99801 * 11 10 9 24 24 H 0.97003 * 119.99797 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47011 * 60.00199 * 9 7 2 26 26 H 1.09002 * 109.47669 * 300.00355 * 9 7 2 27 27 H 1.08996 * 109.47419 * 60.00566 * 10 9 7 28 28 H 1.09008 * 109.47491 * 299.99766 * 10 9 7 29 29 H 1.09004 * 109.50485 * 62.46217 * 12 11 10 30 30 H 1.08999 * 109.50870 * 302.33706 * 12 11 10 31 31 H 1.09007 * 109.50521 * 183.21558 * 13 12 11 32 32 H 1.09004 * 109.50557 * 63.08975 * 13 12 11 33 33 H 1.09009 * 109.46972 * 179.97438 * 17 15 14 34 34 H 1.09000 * 109.47277 * 299.99469 * 18 17 15 35 35 H 1.09001 * 109.47302 * 59.99532 * 18 17 15 36 36 H 1.09000 * 109.46806 * 300.00124 * 19 18 17 37 37 H 1.08995 * 109.47196 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.46730 * 180.02562 * 20 19 18 39 39 H 1.08992 * 109.47227 * 60.00295 * 20 19 18 40 40 H 1.08996 * 109.47171 * 299.99778 * 21 20 19 41 41 H 1.09001 * 109.46872 * 180.02562 * 21 20 19 42 42 H 1.09006 * 109.47286 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47674 * 60.00090 * 22 21 20 44 44 H 1.09003 * 109.50470 * 57.66784 * 23 11 10 45 45 H 1.09000 * 109.50644 * 297.54111 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7712 -5.1150 -1.2588 13 6 -0.0251 -6.4209 -1.1930 14 8 0.8687 -7.5058 -0.9298 15 6 1.6050 -7.3627 0.2879 16 1 0.9130 -7.3257 1.1294 17 6 2.5514 -8.5531 0.4555 18 6 3.5235 -8.6019 -0.7249 19 6 4.4704 -9.7919 -0.5569 20 6 3.6579 -11.0876 -0.5114 21 6 2.6858 -11.0387 0.6691 22 6 1.7390 -9.8487 0.5011 23 6 2.4179 -6.0664 0.2371 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 1.4737 -5.1587 -2.0911 30 1 0.0874 -4.2785 -1.4024 31 1 -0.5298 -6.5877 -2.1447 32 1 -0.7645 -6.3565 -0.3946 33 1 3.1126 -8.4432 1.3836 34 1 2.9628 -8.7115 -1.6531 35 1 4.1026 -7.6790 -0.7571 36 1 5.0311 -9.6819 0.3713 37 1 5.1627 -9.8269 -1.3981 38 1 4.3325 -11.9353 -0.3913 39 1 3.0972 -11.1976 -1.4395 40 1 3.2466 -10.9288 1.5972 41 1 2.1073 -11.9620 0.7018 42 1 1.0461 -9.8141 1.3419 43 1 1.1781 -9.9588 -0.4270 44 1 2.9361 -5.9243 1.1855 45 1 3.1467 -6.1253 -0.5713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375244445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:30 Heat of formation + Delta-G solvation = -76.007515 kcal Electronic energy + Delta-G solvation = -21248.637540 eV Core-core repulsion = 18264.471022 eV Total energy + Delta-G solvation = -2984.166518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92020 -37.95343 -35.63691 -33.00634 -32.65982 -30.85767 -29.93002 -29.10626 -26.41214 -24.16429 -23.66082 -22.69249 -21.73973 -20.28450 -19.80536 -19.49112 -16.59708 -16.08377 -15.85143 -15.27838 -14.81071 -14.67323 -14.52015 -14.27187 -14.08589 -13.96795 -13.48694 -13.23065 -12.68136 -12.42242 -12.19201 -12.17231 -11.76847 -11.45364 -11.21925 -11.18415 -11.14612 -11.06531 -10.90323 -10.62504 -10.54816 -10.41428 -10.06130 -9.97590 -9.87458 -9.56476 -9.16896 -9.07956 -8.34170 -7.76851 -6.00786 -4.03432 3.32662 3.37046 3.39344 3.92863 4.25844 4.48093 4.60676 4.64341 4.71565 5.03429 5.11902 5.26217 5.29010 5.34321 5.35008 5.38225 5.45898 5.47679 5.51564 5.57579 5.63520 5.66036 5.81571 5.84366 5.91290 6.02991 6.06470 6.08211 6.16298 6.17876 6.19331 6.23114 6.32370 6.37260 6.46597 6.49367 6.93508 7.37374 7.43142 7.51999 7.76110 7.86848 8.05695 8.41722 9.03388 9.60246 11.10543 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039936 B = 0.003534 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.961372 B = 7921.384032 C = 8301.575393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.019 3.981 13 C 0.065 3.935 14 O -0.382 6.382 15 C 0.100 3.900 16 H 0.063 0.937 17 C -0.076 4.076 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.110 4.110 23 C 0.022 3.978 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.020 0.980 29 H 0.034 0.966 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -20.946 -0.569 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.063 4.063 11 N -0.262 5.262 12 C -0.110 4.110 13 C -0.012 4.012 14 O -0.301 6.301 15 C 0.042 3.958 16 H 0.081 0.919 17 C -0.095 4.095 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.147 4.147 23 C -0.107 4.107 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.084 -20.962 -0.306 21.358 hybrid contribution 1.027 1.336 -0.484 1.753 sum 5.112 -19.626 -0.790 20.296 Atomic orbital electron populations 1.69963 1.06020 1.26717 1.50539 1.24991 0.94844 0.99178 0.95260 0.86647 0.79577 0.83108 0.78604 1.20287 1.21245 1.20216 1.21151 0.92951 0.91069 1.51061 0.92858 1.19081 0.93948 0.90065 0.97738 1.22352 0.96759 0.88216 0.98982 1.62315 1.27798 1.02557 1.33568 1.22775 0.98429 0.98820 0.90956 1.22660 0.91671 0.85713 1.01125 1.87899 1.56853 1.44076 1.41239 1.22142 0.92850 0.93381 0.87474 0.91888 1.21176 0.95557 0.93627 0.99094 1.21585 0.96911 0.97745 0.98859 1.21549 0.97781 0.94898 1.01477 1.21530 0.97979 0.97327 0.98811 1.21537 0.97593 0.98180 0.98334 1.21496 0.97463 0.93353 1.02436 1.22818 0.94982 0.91493 1.01385 0.92919 0.96531 0.95739 0.92053 0.96187 0.94771 0.88715 0.88968 0.92546 0.90268 0.91133 0.91926 0.92245 0.92292 0.92521 0.92034 0.92251 0.92289 0.92263 0.91068 0.90438 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.76 4.91 -27.88 -0.14 0.62 16 10 C 0.06 1.37 4.90 -3.82 -0.02 1.35 16 11 N -0.54 -10.02 4.73 -234.31 -1.11 -11.13 16 12 C 0.02 0.32 5.44 -3.71 -0.02 0.30 16 13 C 0.07 0.94 7.01 37.21 0.26 1.20 16 14 O -0.38 -5.53 9.13 -35.23 -0.32 -5.85 16 15 C 0.10 1.35 2.54 -26.68 -0.07 1.28 16 16 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.08 -0.83 2.08 -90.63 -0.19 -1.02 16 18 C -0.11 -1.24 4.71 -26.73 -0.13 -1.37 16 19 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 20 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 22 C -0.11 -1.11 5.06 -26.74 -0.14 -1.24 16 23 C 0.02 0.34 4.66 -3.71 -0.02 0.32 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.45 6.52 -51.93 -0.34 0.11 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 28 H 0.02 0.43 8.12 -51.92 -0.42 0.01 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.79 6.38 -51.93 -0.33 1.46 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 35 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.80 7.69 -51.93 -0.40 0.40 16 44 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 45 H 0.04 0.61 6.27 -51.93 -0.33 0.29 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -29.83 338.67 -10.37 -40.20 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -8.42 Total: -3.03 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -1.34 Total: -15.80 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.37 Total: -37.32 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.32 Total: -5.85 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.83 -10.37 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375244445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.809 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds