Wall clock time and date at job start Mon Mar 30 2020 07:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48495 * 109.47123 * 239.99840 * 3 2 1 5 5 H 1.48494 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46850 * 119.99856 * 3 2 1 7 7 C 1.37871 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00180 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46976 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47327 * 180.02562 * 10 9 7 12 12 C 1.47015 * 111.00294 * 66.36105 * 11 10 9 13 13 C 1.53093 * 109.26056 * 182.39421 * 12 11 10 14 14 O 1.43015 * 109.25957 * 303.15203 * 13 12 11 15 15 C 1.43017 * 113.73701 * 58.67103 * 14 13 12 16 16 H 1.09004 * 109.50547 * 61.26158 * 15 14 13 17 17 C 1.52995 * 109.50342 * 181.39241 * 15 14 13 18 18 C 1.52996 * 109.47175 * 60.00400 * 17 15 14 19 19 C 1.53005 * 109.47329 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.46789 * 59.99681 * 19 18 17 21 21 C 1.53000 * 109.47015 * 299.99961 * 20 19 18 22 22 C 1.52995 * 109.47008 * 60.00530 * 21 20 19 23 23 C 1.47015 * 111.00452 * 189.99801 * 11 10 9 24 24 H 0.97003 * 119.99797 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47011 * 60.00199 * 9 7 2 26 26 H 1.09002 * 109.47669 * 300.00355 * 9 7 2 27 27 H 1.08996 * 109.47419 * 60.00566 * 10 9 7 28 28 H 1.09008 * 109.47491 * 299.99766 * 10 9 7 29 29 H 1.09004 * 109.50485 * 62.46217 * 12 11 10 30 30 H 1.08999 * 109.50870 * 302.33706 * 12 11 10 31 31 H 1.09007 * 109.50521 * 183.21558 * 13 12 11 32 32 H 1.09004 * 109.50557 * 63.08975 * 13 12 11 33 33 H 1.09009 * 109.46972 * 179.97438 * 17 15 14 34 34 H 1.09000 * 109.47277 * 299.99469 * 18 17 15 35 35 H 1.09001 * 109.47302 * 59.99532 * 18 17 15 36 36 H 1.09000 * 109.46806 * 300.00124 * 19 18 17 37 37 H 1.08995 * 109.47196 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.46730 * 180.02562 * 20 19 18 39 39 H 1.08992 * 109.47227 * 60.00295 * 20 19 18 40 40 H 1.08996 * 109.47171 * 299.99778 * 21 20 19 41 41 H 1.09001 * 109.46872 * 180.02562 * 21 20 19 42 42 H 1.09006 * 109.47286 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47674 * 60.00090 * 22 21 20 44 44 H 1.09003 * 109.50470 * 57.66784 * 23 11 10 45 45 H 1.09000 * 109.50644 * 297.54111 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7712 -5.1150 -1.2588 13 6 -0.0251 -6.4209 -1.1930 14 8 0.8687 -7.5058 -0.9298 15 6 1.6050 -7.3627 0.2879 16 1 0.9130 -7.3257 1.1294 17 6 2.5514 -8.5531 0.4555 18 6 3.5235 -8.6019 -0.7249 19 6 4.4704 -9.7919 -0.5569 20 6 3.6579 -11.0876 -0.5114 21 6 2.6858 -11.0387 0.6691 22 6 1.7390 -9.8487 0.5011 23 6 2.4179 -6.0664 0.2371 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 1.4737 -5.1587 -2.0911 30 1 0.0874 -4.2785 -1.4024 31 1 -0.5298 -6.5877 -2.1447 32 1 -0.7645 -6.3565 -0.3946 33 1 3.1126 -8.4432 1.3836 34 1 2.9628 -8.7115 -1.6531 35 1 4.1026 -7.6790 -0.7571 36 1 5.0311 -9.6819 0.3713 37 1 5.1627 -9.8269 -1.3981 38 1 4.3325 -11.9353 -0.3913 39 1 3.0972 -11.1976 -1.4395 40 1 3.2466 -10.9288 1.5972 41 1 2.1073 -11.9620 0.7018 42 1 1.0461 -9.8141 1.3419 43 1 1.1781 -9.9588 -0.4270 44 1 2.9361 -5.9243 1.1855 45 1 3.1467 -6.1253 -0.5713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375244445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:30 Heat of formation + Delta-G solvation = -93.355591 kcal Electronic energy + Delta-G solvation = -21249.389809 eV Core-core repulsion = 18264.471022 eV Total energy + Delta-G solvation = -2984.918787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06499 -38.94561 -37.10588 -35.05312 -33.69246 -31.88607 -31.56372 -30.23795 -27.99327 -25.70560 -25.06600 -23.59423 -22.98696 -21.64171 -21.10665 -20.42820 -18.64121 -17.24418 -17.16419 -16.58334 -16.40360 -16.10240 -15.65952 -15.63524 -15.01955 -14.88574 -14.78158 -14.47534 -14.16565 -14.07648 -13.40451 -13.30829 -13.00027 -12.89092 -12.77505 -12.63861 -12.45088 -12.24020 -12.01855 -11.94194 -11.84267 -11.62698 -11.47791 -11.31090 -11.27395 -10.89027 -10.77591 -10.55822 -10.44422 -9.28360 -8.21879 -6.33655 1.39145 1.42369 1.50356 2.38527 2.78139 2.94053 3.11355 3.68385 3.77328 3.91658 4.01738 4.08053 4.12163 4.23714 4.27214 4.39132 4.43488 4.51578 4.56171 4.61642 4.66315 4.68250 4.70244 4.72301 4.80225 4.85600 4.88711 4.98677 5.04151 5.11141 5.22074 5.32446 5.36291 5.36813 5.40665 5.43131 5.50086 5.60588 5.67417 5.74007 6.01403 6.13356 6.24689 6.27705 6.82651 7.35494 8.90010 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039936 B = 0.003534 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.961372 B = 7921.384032 C = 8301.575393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.080 3.920 11 N -0.549 5.549 12 C 0.020 3.980 13 C 0.072 3.928 14 O -0.383 6.383 15 C 0.102 3.898 16 H 0.059 0.941 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.107 4.107 23 C 0.023 3.977 24 H 0.264 0.736 25 H -0.005 1.005 26 H -0.007 1.007 27 H 0.065 0.935 28 H 0.018 0.982 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 -22.019 -0.272 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.001 3.999 10 C -0.047 4.047 11 N -0.274 5.274 12 C -0.109 4.109 13 C -0.005 4.005 14 O -0.302 6.302 15 C 0.044 3.956 16 H 0.077 0.923 17 C -0.090 4.090 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.105 4.105 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.011 0.989 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.482 -22.061 -0.010 22.731 hybrid contribution 0.559 1.645 -0.581 1.831 sum 6.041 -20.416 -0.590 21.299 Atomic orbital electron populations 1.70101 1.07804 1.27909 1.51220 1.25963 0.95773 1.03322 0.94523 0.85478 0.78268 0.77960 0.79204 1.19198 1.20714 1.19088 1.21586 0.93511 0.92294 1.51245 0.92240 1.18894 0.94130 0.91782 0.95093 1.21992 0.95442 0.88310 0.98995 1.62237 1.28372 1.02447 1.34373 1.22767 0.98097 0.99682 0.90331 1.22656 0.91150 0.84164 1.02493 1.87919 1.56849 1.43698 1.41694 1.22230 0.92927 0.93479 0.86990 0.92259 1.21188 0.95175 0.92946 0.99668 1.21535 0.96961 0.98305 0.98035 1.21534 0.97508 0.94315 1.02068 1.21532 0.98079 0.97423 0.98536 1.21524 0.97390 0.97747 0.98661 1.21457 0.97637 0.93466 1.01875 1.22913 0.94795 0.90992 1.01762 0.92684 0.98689 0.98888 0.91645 0.96412 0.95052 0.91076 0.86517 0.92600 0.89049 0.92681 0.92826 0.91483 0.91863 0.91095 0.92645 0.91469 0.91304 0.91988 0.92379 0.89593 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.09 4.91 29.85 0.15 2.24 16 10 C 0.08 3.50 4.90 86.30 0.42 3.93 16 11 N -0.55 -20.72 4.73 -895.21 -4.23 -24.95 16 12 C 0.02 0.69 5.44 86.31 0.47 1.16 16 13 C 0.07 2.05 7.01 72.01 0.50 2.56 16 14 O -0.38 -10.74 9.13 -148.98 -1.36 -12.10 16 15 C 0.10 2.65 2.54 30.62 0.08 2.73 16 16 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 17 C -0.07 -1.45 2.08 -10.80 -0.02 -1.47 16 18 C -0.11 -2.27 4.71 30.59 0.14 -2.13 16 19 C -0.12 -1.89 5.92 30.60 0.18 -1.70 16 20 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 21 C -0.12 -1.69 5.92 30.59 0.18 -1.50 16 22 C -0.11 -1.96 5.06 30.59 0.15 -1.80 16 23 C 0.02 0.70 4.66 86.31 0.40 1.10 16 24 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.30 6.52 -2.39 -0.02 -0.32 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.07 2.78 8.04 -2.39 -0.02 2.76 16 28 H 0.02 0.78 8.12 -2.38 -0.02 0.76 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 2.83 6.38 -2.39 -0.02 2.81 16 31 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.05 1.30 7.68 -2.39 -0.02 1.28 16 35 H 0.05 1.18 6.36 -2.39 -0.02 1.17 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.06 1.22 7.69 -2.39 -0.02 1.21 16 44 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 45 H 0.04 1.22 6.27 -2.39 -0.01 1.20 16 Total: -1.00 -64.30 338.67 1.18 -63.13 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.92 Total: 11.62 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 3.54 Total: -27.33 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -3.95 Total: -81.85 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.36 Total: -12.10 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.30 1.18 -63.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375244445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.229 kcal (2) G-P(sol) polarization free energy of solvation -64.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds